Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Reverse (-)

53673744 .. 53674640

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030036

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGATGATACTGAAGAAGCAAAAGCTTACCAAGATGAAATTCATGCAATCTTGGGGGAGAAATTATCAACAGAAGATGAAGAGGAAATTTTAGCAGAATTTGAGAACTTGGAAGCTCAGATCACTGTTCAAGATCTGCCTGAAGCACCTTCTTCAGTGCCATCCCTTCAAGAAAATGAGAAGTTGGACCTTCCAAATGTGCCAACCAAAGCACCAGTTTTTGCTAAAAGTACAGTTATGGAGGAACCGGTAGGACCGAAAACAAAGGGAAAGAAGGACAATTGGCTTACAGAGCTCGGAATGTCGTCCCTAGAGCCCCATCCAGACTATGTTCAGGCGTTTAGCCAACGCAATCCAGTGCCAGGTTGGATTCTCGATATATGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

130

Amino Acids

14.38

Weight (kDa)

4.22

Isoelectric Point (pI)

69.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	1 - 71	9.6e-09	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	39, 87, 98
AcuI	CTGAAG	3 cut(s)	33, 138, 162
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	131, 170
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	3 cut(s)	26, 116, 295
AluI	AGCT	3 cut(s)	26, 116, 295
Alw21I	GWGCWC	1 cut(s)	297
ApoI	RAATTY	3 cut(s)	39, 87, 98
AsiGI	ACCGGT	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	187, 254
AvaII	GGWCC	2 cut(s)	187, 254
BanII	GRGCYC	2 cut(s)	297, 318
Bbv12I	GWGCWC	1 cut(s)	297
BccI	CCATC	2 cut(s)	169, 327
BciT130I	CCWGG	1 cut(s)	363
BfaI	CTAG	1 cut(s)	311
BglII	AGATCT	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	2 cut(s)	187, 254
BmgT120I	GGNCC	2 cut(s)	187, 254
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	215, 356
BseBI	CCWGG	1 cut(s)	363
BseGI	GGATG	3 cut(s)	10, 161, 319
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	2 cut(s)	215, 356
BshTI	ACCGGT	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	297, 318
Bsp143I	GATC	2 cut(s)	120, 133
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	215, 356
BssAI	RCCGGY	1 cut(s)	247
BssMI	GATC	2 cut(s)	120, 133
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	127, 235
Bst6I	CTCTTC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	10, 161, 319
BstKTI	GATC	2 cut(s)	123, 136
BstMBI	GATC	2 cut(s)	120, 133
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	10, 161, 319
BtsIMutI	CAGTG	3 cut(s)	123, 162, 363
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	187, 254
Csp6I	GTAC	1 cut(s)	231
CspAI	ACCGGT	1 cut(s)	247
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	6 cut(s)	26, 116, 286, 295, 316, 345
CviKI_1	RGCY	6 cut(s)	26, 116, 286, 295, 316, 345
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	122, 135
DpnII	GATC	2 cut(s)	120, 133
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	2 cut(s)	297, 318
Eco47I	GGWCC	2 cut(s)	187, 254
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	3 cut(s)	33, 138, 162
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	361
EcoT38I	GRGCYC	2 cut(s)	297, 318
FaeI	CATG	1 cut(s)	47
FaiI	YATR	5 cut(s)	45, 239, 330, 380, 382
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	1 cut(s)	43
FokI	GGATG	3 cut(s)	17, 148, 306
FriOI	GRGCYC	2 cut(s)	297, 318
FspBI	CTAG	1 cut(s)	311
HapII	CCGG	1 cut(s)	248
Hin1II	CATG	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	120, 299
Hpy188III	TCNNGA	4 cut(s)	131, 170, 323, 374
HpyAV	CCTTC	4 cut(s)	159, 176, 200, 268
HpyCH4III	ACNGT	2 cut(s)	127, 235
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	120, 133
LpnPI	CCDG	8 cut(s)	153, 228, 261, 320, 336, 348, 369, 375
MaeI	CTAG	1 cut(s)	311
MalI	GATC	2 cut(s)	122, 135
MboI	GATC	2 cut(s)	120, 133
MboII	GAAGA	4 cut(s)	26, 86, 92, 144
MfeI	CAATTG	1 cut(s)	280
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	297, 318
MluCI	AATT	5 cut(s)	39, 62, 87, 98, 280
MmeI	TCCRAC	2 cut(s)	165, 347
MnlI	CCTC	2 cut(s)	76, 235
MseI	TTAA	1 cut(s)	388
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeII	GATC	2 cut(s)	120, 133
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	370
PinAI	ACCGGT	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	187, 254
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	388
Sau3AI	GATC	2 cut(s)	120, 133
Sau96I	GGNCC	2 cut(s)	187, 254
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	2 cut(s)	297, 318
SetI	ASST	6 cut(s)	28, 118, 151, 192, 297, 367
SinI	GGWCC	2 cut(s)	187, 254
Sse9I	AATT	5 cut(s)	39, 62, 87, 98, 280
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	127, 235
TaqI	TCGA	1 cut(s)	375
TaqII	GACCGA	1 cut(s)	271
TasI	AATT	5 cut(s)	39, 62, 87, 98, 280
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TscAI	CASTG	3 cut(s)	130, 162, 363
TspDTI	ATGAA	3 cut(s)	32, 51, 93
TspRI	CASTG	3 cut(s)	130, 162, 363
VpaK11BI	GGWCC	2 cut(s)	187, 254
XapI	RAATTY	3 cut(s)	39, 87, 98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	363
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.