Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000972.1

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Forward (+)

38101 .. 38361

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000972.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atggatgatactgatgaagcaaaagcttaccaagatgaaattaatgcaatcttgggggagaaattatcaacagaagatgaagaggaaattttagcagaatttgagaacttggaagctcagatcactgttcaagatctgcctgaagcaccttcttcagtgccatcccttcaagaaaatgagaagttggaccttcgaaatgtgccaaccaaagcaccagtttctgctaaaaggagagttatggaggaaccggtgttggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

86

Amino Acids

9.6

Weight (kDa)

4.09

Isoelectric Point (pI)

81.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	87, 98
AcuI	CTGAAG	2 cut(s)	138, 162
AgeI	ACCGGT	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	131, 170
AluBI	AGCT	2 cut(s)	26, 116
AluI	AGCT	2 cut(s)	26, 116
AlwNI	CAGNNNCTG	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	87, 98
AseI	ATTAAT	1 cut(s)	42
AsiGI	ACCGGT	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	187
AsuII	TTCGAA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	187
BccI	CCATC	1 cut(s)	169
BglII	AGATCT	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	215
BseGI	GGATG	2 cut(s)	10, 161
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	215
BshTI	ACCGGT	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	120, 133
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	246
BspT104I	TTCGAA	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	247
BssMI	GATC	2 cut(s)	120, 133
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	10, 161
BstKTI	GATC	2 cut(s)	123, 136
BstMBI	GATC	2 cut(s)	120, 133
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	10, 161
BtsIMutI	CAGTG	2 cut(s)	123, 162
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	187
CspAI	ACCGGT	1 cut(s)	247
CviJI	RGCY	3 cut(s)	26, 116, 257
CviKI_1	RGCY	3 cut(s)	26, 116, 257
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	122, 135
DpnII	GATC	2 cut(s)	120, 133
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	187
Eco57I	CTGAAG	2 cut(s)	138, 162
FaiI	YATR	1 cut(s)	239
FokI	GGATG	2 cut(s)	17, 148
HapII	CCGG	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	24
HpaII	CCGG	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	2 cut(s)	131, 170
HpyAV	CCTTC	3 cut(s)	159, 176, 200
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	120, 133
LpnPI	CCDG	2 cut(s)	153, 228
MalI	GATC	2 cut(s)	122, 135
MboI	GATC	2 cut(s)	120, 133
MboII	GAAGA	3 cut(s)	86, 92, 144
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	4 cut(s)	39, 62, 87, 98
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	76, 235
MseI	TTAA	1 cut(s)	42
MspI	CCGG	1 cut(s)	248
NdeII	GATC	2 cut(s)	120, 133
NlaIV	GGNNCC	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	120, 133
Sau96I	GGNCC	1 cut(s)	187
SetI	ASST	4 cut(s)	28, 118, 151, 192
SfuI	TTCGAA	1 cut(s)	193
SgeI	CNNG	7 cut(s)	44, 64, 121, 143, 152, 182, 227
SinI	GGWCC	1 cut(s)	187
Sse9I	AATT	4 cut(s)	39, 62, 87, 98
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	193
TasI	AATT	4 cut(s)	39, 62, 87, 98
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	130, 162
TspDTI	ATGAA	3 cut(s)	30, 51, 93
TspRI	CASTG	2 cut(s)	130, 162
VpaK11BI	GGWCC	1 cut(s)	187
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	2 cut(s)	87, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.