Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Reverse (-)

8297095 .. 8299372

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGGAATTTGTTCGTGAAGAAGCCCAAGATCACGCAGGTTGATCGAGCGATTCTTTCTCTCAAGACCCAGAGACGCAAGCTTGCTCAGTACCAACAACAGCTCGAAGCTGTAATCGAAGCCGAAAAGCAAGCCGCAAGGGATTTGATTCGTGACAAGAAAAAGGAAAGAGCTTTGTTAGCGTTAAAGAAGAAAAAGGCACAGGAAGAATTGTTGAAGCAAGTTGATACCTGGGTTATTAATGTTGAGCAACAATTGCAAGATATCGAACTGACAAGCAAGCAGAAAGCGGTATTCGAGAGTTTGAAGGCTGGTAATAATGCGATTAAAGCGTTACAAAGTGAGATCAATCTCGAGGACGTGCAAAAGCTAATGGATGATACTGATGAAGCTAAAGCATACCAAGATGAAATTAATGGAATCTTGGGGGAGAAATTATCAGCGGAAGACGAAGAGGATATTTTAGCAGAATTAGAGAACTTGGAAGCTCAGATCACTGTTCAAGATCTGCCTACAGCTCCTGCTTCGGTGCTTCCTCAAGAAAATGAGAAGTTGGACCTTCCTGATGTACCAACCAAAGTACCAGTTGCACCTGATGTGGTTACAACTGATGAAGTTTCCACCAAGACGAAAGTGATGGAGGAACCGTTGGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

220

Amino Acids

24.58

Weight (kDa)

4.76

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AciI	CCGC	3 cut(s)	135, 290, 443
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	3 cut(s)	92, 570, 582
AgsI	TTSAA	3 cut(s)	217, 307, 503
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	8 cut(s)	82, 103, 110, 173, 370, 392, 488, 518
AluI	AGCT	8 cut(s)	82, 103, 110, 173, 370, 392, 488, 518
Alw26I	GTCTC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	7
AseI	ATTAAT	2 cut(s)	240, 414
Asp700I	GAANNNNTTC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	556
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	556
BaeI	ACNNNNGTAYC	4 cut(s)	219, 252, 564, 597
BbsI	GAAGAC	1 cut(s)	453
BccI	CCATC	1 cut(s)	631
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	28
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	556
BmeT110I	CYCGRG	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	47, 522
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	1 cut(s)	632
Bse1I	ACTGG	1 cut(s)	584
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	101, 503
BseNI	ACTGG	1 cut(s)	584
BsiHKCI	CYCGRG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	30, 43, 345, 492, 505
BspACI	CCGC	3 cut(s)	135, 290, 443
BspCNI	CTCAG	2 cut(s)	100, 502
BspLI	GGNNCC	1 cut(s)	645
BspMI	ACCTGC	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	5 cut(s)	30, 43, 345, 492, 505
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	499, 648
Bst6I	CTCTTC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	4 cut(s)	80, 84, 132, 281
BstDEI	CTNAG	2 cut(s)	87, 489
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	5 cut(s)	33, 46, 348, 495, 508
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	5 cut(s)	30, 43, 345, 492, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	513
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	495
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	4 cut(s)	80, 84, 132, 281
CaiI	CAGNNNCTG	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	556
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	3 cut(s)	91, 569, 581
CviQI	GTAC	3 cut(s)	91, 569, 581
DdeI	CTNAG	2 cut(s)	87, 489
DpnI	GATC	5 cut(s)	32, 45, 347, 494, 507
DpnII	GATC	5 cut(s)	30, 43, 345, 492, 505
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	556
Eco88I	CYCGRG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	67
FaiI	YATR	1 cut(s)	400
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
HgaI	GACGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	52, 148, 420
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	8 cut(s)	16, 64, 152, 298, 353, 503, 539, 563
HpyAV	CCTTC	2 cut(s)	301, 569
HpyCH4III	ACNGT	2 cut(s)	499, 648
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	3 cut(s)	259, 364, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
HpyF3I	CTNAG	2 cut(s)	87, 489
HpySE526I	ACGT	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	30, 43, 345, 492, 505
LmnI	GCTCC	1 cut(s)	523
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	3 cut(s)	152, 333, 601
MalI	GATC	5 cut(s)	32, 45, 347, 494, 507
MboI	GATC	5 cut(s)	30, 43, 345, 492, 505
MboII	GAAGA	5 cut(s)	31, 202, 218, 458, 464
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	1 cut(s)	505
MluCI	AATT	6 cut(s)	7, 209, 254, 411, 434, 470
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	4 cut(s)	349, 448, 546, 634
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	4 cut(s)	185, 240, 327, 414
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
NdeII	GATC	5 cut(s)	30, 43, 345, 492, 505
NlaIV	GGNNCC	1 cut(s)	645
NmuCI	GTSAC	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	3 cut(s)	52, 148, 420
PkrI	GCNGC	1 cut(s)	136
PshBI	ATTAAT	2 cut(s)	240, 414
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	3 cut(s)	92, 570, 582
RsaNI	GTAC	3 cut(s)	91, 569, 581
SaqAI	TTAA	4 cut(s)	185, 240, 327, 414
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	5 cut(s)	30, 43, 345, 492, 505
Sau96I	GGNCC	1 cut(s)	556
ScrFI	CCNGG	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	513
Sfr274I	CTCGAG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	556
SlaI	CTCGAG	1 cut(s)	353
SmlI	CTYRAG	3 cut(s)	62, 353, 537
SmoI	CTYRAG	3 cut(s)	62, 353, 537
Sse9I	AATT	6 cut(s)	7, 209, 254, 411, 434, 470
SsiI	CCGC	3 cut(s)	135, 290, 443
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	499, 648
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	6 cut(s)	46, 105, 117, 267, 297, 354
TasI	AATT	6 cut(s)	7, 209, 254, 411, 434, 470
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	3 cut(s)	52, 148, 420
Tru1I	TTAA	4 cut(s)	185, 240, 327, 414
Tru9I	TTAA	4 cut(s)	185, 240, 327, 414
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	402, 423, 627
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	556
VspI	ATTAAT	2 cut(s)	240, 414
XapI	RAATTY	1 cut(s)	7
XhoI	CTCGAG	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.