Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Reverse (-)

14264179 .. 14267770

Gene Structure 3592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGGAATTTGTTCGTGAAGAAACCCAAGATCACCGATGTCGATCGAGCTATTTTGTCTCTCAAGACCCAGAGACGCAAGCTCGCTCAGTACCAACAACAGCTTGAAGCTGTAATTGAAGCAGAAAAGCAGGCTGCAAGAGACTTGATTCGTGATAAGAAAAAGGAAAGAGCTTTGTTAGCATTGAAGAAGAAAAAGGCACAAGAAGAATTATTGAAGCAAGTCGATACCTGGGTTATTAATGTTGAGCAACAATTGCAAGATATTGAACTATCAAGCAAGCAGAAAGCTGTGTTTGAGAGTTTGAAGGCTGGTAATAGTGCAATTAAAGCTATTCAAAGTGAGATCAACCTTGAGGATGTTCAAAAGCTAATGGATGATACTGAGGAAGCTAAAGCTTACCAAGATGAAATTAGTGCAATTTTGGGGGAGAAATTATCAACAGAAGATGAAGAGGAAATCTTAGCAGAATTTGAGAACTTGGAAGCTCAGATAACTATTCAAGACCTTCCCGAAACTCCTGCTTCAGTGCCGGGTCCTCAAGATGAGAAGTTGGACCTTCCTGATGTACCAACCAAAGTGCCAGTTGCACCTGATGTGGTCACAGATGATGCAAAAGATTCTGCTACGATTAAAGTTATGGAGGAACCGGTGCTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

221

Amino Acids

24.64

Weight (kDa)

4.65

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	17 - 193	3e-42	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	7, 470
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	2 cut(s)	92, 570
AgeI	ACCGGT	1 cut(s)	649
AgsI	TTSAA	9 cut(s)	107, 119, 187, 217, 269, 307, 338, 365, 503
AjnI	CCWGG	1 cut(s)	230
Alw26I	GTCTC	3 cut(s)	63, 67, 135
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	7, 470
AseI	ATTAAT	1 cut(s)	240
AsiGI	ACCGGT	1 cut(s)	649
Asp700I	GAANNNNTTC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	536, 556
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	536, 556
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BbvI	GCAGC	1 cut(s)	121
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	3 cut(s)	63, 67, 135
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	232, 534
Bme18I	GGWCC	2 cut(s)	536, 556
BmgT120I	GGNCC	2 cut(s)	536, 556
BmiI	GGNNCC	2 cut(s)	537, 648
BmrFI	CCNGG	2 cut(s)	232, 534
BmsI	GCATC	1 cut(s)	601
BpuEI	CTTGAG	3 cut(s)	47, 374, 525
BpuMI	CCSGG	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	649
Bse118I	RCCGGY	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	584
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	364, 382
BseJI	GATNNNNATC	1 cut(s)	42
BseMII	CTCAG	3 cut(s)	101, 375, 503
BseNI	ACTGG	1 cut(s)	584
BseXI	GCAGC	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	46
BshTI	ACCGGT	1 cut(s)	649
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	533, 650
BsmAI	GTCTC	3 cut(s)	63, 67, 135
BsmBI	CGTCTC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	30, 43, 345
BspCNI	CTCAG	3 cut(s)	100, 376, 502
BspLI	GGNNCC	2 cut(s)	537, 648
BsrFI	RCCGGY	1 cut(s)	649
BsrI	ACTGG	1 cut(s)	584
BssAI	RCCGGY	1 cut(s)	649
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	30, 43, 345
Bst2UI	CCWGG	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	5 cut(s)	80, 84, 132, 281, 657
BstDEI	CTNAG	4 cut(s)	87, 384, 463, 489
BstF5I	GGATG	2 cut(s)	364, 382
BstKTI	GATC	3 cut(s)	33, 46, 348
BstMAI	GTCTC	3 cut(s)	63, 67, 135
BstMBI	GATC	3 cut(s)	30, 43, 345
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	230, 532
BstV1I	GCAGC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	364, 382
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	5 cut(s)	80, 84, 132, 281, 657
Cfr10I	RCCGGY	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	536, 556
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	91, 569
CspAI	ACCGGT	1 cut(s)	649
CviQI	GTAC	2 cut(s)	91, 569
DdeI	CTNAG	4 cut(s)	87, 384, 463, 489
DpnI	GATC	3 cut(s)	32, 45, 347
DpnII	GATC	3 cut(s)	30, 43, 345
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco47I	GGWCC	2 cut(s)	536, 556
Eco57I	CTGAAG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	67
FaiI	YATR	1 cut(s)	641
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	2 cut(s)	371, 389
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
HapII	CCGG	2 cut(s)	533, 650
HgaI	GACGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	2 cut(s)	148, 620
HpaII	CCGG	2 cut(s)	533, 650
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	7 cut(s)	16, 64, 152, 503, 512, 542, 563
HpyAV	CCTTC	3 cut(s)	301, 518, 569
HpyCH4V	TGCA	6 cut(s)	137, 259, 323, 419, 590, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
HpyF3I	CTNAG	4 cut(s)	87, 384, 463, 489
Kzo9I	GATC	3 cut(s)	30, 43, 345
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	601
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	3 cut(s)	32, 45, 347
MboI	GATC	3 cut(s)	30, 43, 345
MboII	GAAGA	6 cut(s)	31, 199, 202, 218, 458, 464
MfeI	CAATTG	1 cut(s)	254
MluCI	AATT	9 cut(s)	7, 114, 209, 254, 324, 411, 420, 434, 470
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	5 cut(s)	349, 379, 448, 549, 637
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	3 cut(s)	240, 327, 633
MspI	CCGG	2 cut(s)	533, 650
MspR9I	CCNGG	2 cut(s)	232, 534
MunI	CAATTG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	3 cut(s)	30, 43, 345
NlaIV	GGNNCC	2 cut(s)	537, 648
NmuCI	GTSAC	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	148, 620
PinAI	ACCGGT	1 cut(s)	649
PkrI	GCNGC	1 cut(s)	136
Ple19I	CGATCG	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	536
PshBI	ATTAAT	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	537, 648
PspPI	GGNCC	2 cut(s)	536, 556
PspPPI	RGGWCCY	1 cut(s)	536
PvuI	CGATCG	1 cut(s)	46
RsaI	GTAC	2 cut(s)	92, 570
RsaNI	GTAC	2 cut(s)	91, 569
SaqAI	TTAA	3 cut(s)	240, 327, 633
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	30, 43, 345
Sau96I	GGNCC	2 cut(s)	536, 556
ScrFI	CCNGG	2 cut(s)	232, 534
SfaNI	GCATC	1 cut(s)	601
SinI	GGWCC	2 cut(s)	536, 556
SmlI	CTYRAG	3 cut(s)	62, 353, 540
SmoI	CTYRAG	3 cut(s)	62, 353, 540
Sse9I	AATT	9 cut(s)	7, 114, 209, 254, 324, 411, 420, 434, 470
StyD4I	CCNGG	2 cut(s)	230, 532
TaqI	TCGA	3 cut(s)	42, 46, 225
TasI	AATT	9 cut(s)	7, 114, 209, 254, 324, 411, 420, 434, 470
TfiI	GAWTC	2 cut(s)	148, 620
Tru1I	TTAA	3 cut(s)	240, 327, 633
Tru9I	TTAA	3 cut(s)	240, 327, 633
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	2 cut(s)	423, 465
TspRI	CASTG	1 cut(s)	534
VpaK11BI	GGWCC	2 cut(s)	536, 556
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	2 cut(s)	7, 470
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.