Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007790

Physical Location & Seq

Genomic Coordinates Reverse (-)

25373658 .. 25376945

Gene Structure 3288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00350790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGGAATTTGTTCGTGAAGAAACCCAAGATCACCGATGTCGATCGAGCGATTCTCTCTCTCAAGACCCAGAGACGCAAGCTCGGTCAATACCAACAACAGCTTGAAGCTGTAATTGAAGCAGAAAAGCAGGCTGCAAGGGACTTGATTCGTGATAAGAAAAAGGAAAGAGCCTTATTAGCATTGAAGAAGAAGAAGGCACAAGAAGAATTATTGAAGCAAGTAGATACATGGGTTATTAATGTTGAGCAACAATTGCAAGATATTGAACTATCAAGCAAGCAGAAAGCTGTATTTGAGAGTTTGAAGGCCGGTAATAATGCAATAAAAGCTATACAAAGTGAGATCAACCTTGAGGATGTTCAAAAGCTAATGGATGATACTGAGGAAGCTAAAGTTTACCAAGATTGCAATTTTGGGGAGAAATTATCAACCGAAGATGAAGAGGAAATTTTAGCAGAATTTGACAATTTGGAAGCTCAGATCACTCTTCAAGACCTTCCTGAAGCTCCTGCTTCGGTGCCGGGTCATCAAGATGAGAAGTTGGACCTTCCCGATGTACCAACCAAAGTACCAGTTGCACCTGATGTGGTCACAGATGATGCAAAAGATTCAGCTAAGAGTAAAGTTATGGAGGAACCGGTGTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0005886 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

217

Amino Acids

24.42

Weight (kDa)

4.77

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	17 - 190	3.4e-34	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09260 AT5G63880 AT5G63880
fragaria_vesca	FvH4_4g10490 FvH4_7g03820 FvH4_7g03820
malus_domestica	MD15G1135100.v1.1
prunus_persica	Prupe.4G274300_v2.0.a1
pyrus_communis	pycom01g01040 pycom15g12180
rosa_chinensis	RchiOBHm_Chr4g0406031
rosa_laevigata	RLG00000008800 RLG00000030036
rosa_multiflora	Rmu_sc0000795.1_g000105 Rmu_sc0000972.1_g000011 Rmu_sc0001630.1_g000026
rosa_roxburghii	Rroxscaffold_4G00323080 Rroxscaffold_5G00350790
rosa_rugosa	Rorug01G0064400 Rorug04G0065000.1
rosa_samantha	Rh1BG064700 Rh4AG135500 Rh4DG130600
rosa_wichuraiana	Rw4G011030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	520
AcsI	RAATTY	3 cut(s)	7, 450, 461
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	2 cut(s)	561, 573
AgeI	ACCGGT	1 cut(s)	640
AgsI	TTSAA	8 cut(s)	107, 119, 187, 217, 269, 307, 365, 494
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	3 cut(s)	7, 450, 461
AseI	ATTAAT	1 cut(s)	240
AsiGI	ACCGGT	1 cut(s)	640
Asp700I	GAANNNNTTC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	547
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	547
BaeI	ACNNNNGTAYC	4 cut(s)	219, 252, 555, 588
BanI	GGYRCC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	2 cut(s)	522, 639
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	592
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BpuEI	CTTGAG	2 cut(s)	47, 374
BpuMI	CCSGG	1 cut(s)	525
BsaBI	GATNNNNATC	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	640
Bse118I	RCCGGY	2 cut(s)	311, 640
Bse1I	ACTGG	1 cut(s)	575
Bse8I	GATNNNNATC	1 cut(s)	42
BseGI	GGATG	2 cut(s)	364, 382
BseJI	GATNNNNATC	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	375, 494
BseNI	ACTGG	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	520
BshTI	ACCGGT	1 cut(s)	640
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	312, 524, 641
BslFI	GGGAC	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	67
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	4 cut(s)	30, 43, 345, 483
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	376, 493
BspLI	GGNNCC	2 cut(s)	522, 639
BspT107I	GGYRCC	1 cut(s)	520
BsrFI	RCCGGY	2 cut(s)	311, 640
BsrI	ACTGG	1 cut(s)	575
BssAI	RCCGGY	2 cut(s)	311, 640
BssMI	GATC	4 cut(s)	30, 43, 345, 483
Bst6I	CTCTTC	2 cut(s)	438, 495
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	80, 132, 281
BstDEI	CTNAG	3 cut(s)	384, 480, 618
BstF5I	GGATG	2 cut(s)	364, 382
BstKTI	GATC	4 cut(s)	33, 46, 348, 486
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	4 cut(s)	30, 43, 345, 483
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
BstSCI	CCNGG	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	364, 382
Cac8I	GCNNGC	3 cut(s)	80, 132, 281
Cfr10I	RCCGGY	2 cut(s)	311, 640
Cfr13I	GGNCC	1 cut(s)	547
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	560, 572
CspAI	ACCGGT	1 cut(s)	640
CviAII	CATG	1 cut(s)	231
CviQI	GTAC	2 cut(s)	560, 572
DdeI	CTNAG	3 cut(s)	384, 480, 618
DpnI	GATC	4 cut(s)	32, 45, 347, 485
DpnII	GATC	4 cut(s)	30, 43, 345, 483
Eam1104I	CTCTTC	2 cut(s)	438, 495
EarI	CTCTTC	2 cut(s)	438, 495
Eco47I	GGWCC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	525
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	234
FaiI	YATR	3 cut(s)	232, 335, 632
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	2 cut(s)	371, 389
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	3 cut(s)	312, 524, 641
HgaI	GACGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	234
HinfI	GANTC	3 cut(s)	52, 148, 611
HpaII	CCGG	3 cut(s)	312, 524, 641
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	483
Hpy188III	TCNNGA	7 cut(s)	16, 64, 152, 494, 503, 533, 554
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	4 cut(s)	190, 301, 509, 560
HpyCH4V	TGCA	6 cut(s)	137, 259, 323, 411, 581, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
HpyF3I	CTNAG	3 cut(s)	384, 480, 618
Hsp92II	CATG	1 cut(s)	234
Kzo9I	GATC	4 cut(s)	30, 43, 345, 483
LmnI	GCTCC	1 cut(s)	514
LpnPI	CCDG	8 cut(s)	83, 116, 325, 516, 525, 537, 588, 597
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	592
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	4 cut(s)	32, 45, 347, 485
MboI	GATC	4 cut(s)	30, 43, 345, 483
MboII	GAAGA	8 cut(s)	31, 199, 202, 205, 218, 449, 455, 482
MfeI	CAATTG	1 cut(s)	254
MluCI	AATT	9 cut(s)	7, 114, 209, 254, 412, 425, 450, 461, 469
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	4 cut(s)	349, 379, 439, 628
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	3 cut(s)	312, 524, 641
MspR9I	CCNGG	1 cut(s)	525
MunI	CAATTG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	179, 256, 329
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	4 cut(s)	30, 43, 345, 483
NlaIII	CATG	1 cut(s)	234
NlaIV	GGNNCC	2 cut(s)	522, 639
NmuCI	GTSAC	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	3 cut(s)	52, 148, 611
PinAI	ACCGGT	1 cut(s)	640
PkrI	GCNGC	1 cut(s)	136
Ple19I	CGATCG	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	522, 639
PspPI	GGNCC	1 cut(s)	547
PvuI	CGATCG	1 cut(s)	46
RsaI	GTAC	2 cut(s)	561, 573
RsaNI	GTAC	2 cut(s)	560, 572
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	4 cut(s)	30, 43, 345, 483
Sau96I	GGNCC	1 cut(s)	547
ScrFI	CCNGG	1 cut(s)	525
SfaNI	GCATC	1 cut(s)	592
SinI	GGWCC	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	62, 353
SmoI	CTYRAG	2 cut(s)	62, 353
Sse9I	AATT	9 cut(s)	7, 114, 209, 254, 412, 425, 450, 461, 469
StyD4I	CCNGG	1 cut(s)	523
TaqI	TCGA	2 cut(s)	42, 46
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	9 cut(s)	7, 114, 209, 254, 412, 425, 450, 461, 469
TfiI	GAWTC	3 cut(s)	52, 148, 611
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	547
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	3 cut(s)	7, 450, 461
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.