AT5G09550

guanosine nucleotide diphosphate dissociation inhibitor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2963648 .. 2966811
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G09550.1

Sequence Viewer

Length: 1338 bp
ATGGATGAAGAGTATGATGTGATTGTCCTTGGGACTGGTCTTAAGGAGTGTATCCTTAGTGGCCTCCTCTCTGTCGATGGCCTCAAGGTACTACATATGGATAGAAACGACTACTATGGAGGAGAATCATCCTCTCTTAACCTCACTCAGCTATGGAAGCGTTTTAGGGGAAGTGACACTCCTGAAGAAAATCTTGGAGCAAGCAGAGAATACAATGTCGATATGATCCCAAAGTTTATAATGGCTAATGGACTCCTTGTTCAAACCCTAATCCACACCGATGTTACCAAGTATCTTAACTTTAAGGCCGTTGATGGTAGCTTTGTCTACAAGAAAGGCAAGATCTACAAAGTCCCAGCCACTGATGTGGAAGCCCTGAAATCGCCATTGATGGGTCTTTTCGAGAAGCGACGTGCGAGAAAGTTCTTTATCTATGTGCAAGACTATGATGAGAAGGATCCTAAGTCTCACGAAGGACTTGACCTAAGCAAAGTCACTGCTAGAGAGATCATCTCAAAGTATGGACTTGAAGATGACACAATCGACTTCATAGGGCATGCCTTAGCGCTTCACAACGATGATGACTACTTGGATCAACCCGCCATTGATTTTGTTAAGAGAATCAAGCTCTATGCGGAGTCTCTGGCTCGATTCCAAGGAGGATCCCCTTACATCTATCCGTTGTACGGTCTAGGAGAGCTGCCACAGGCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATGCAAGGTAGAGTTTGATGGTTCTGGAAAAGCTATTGGTGTCACTTCTGCAGGAGAAACTGCTAAATGCAAGAAAGTTGTATGTGATCCTTCTTACCTGTCTGAAAAGGTTAAGAAAGTTGGAAAAGTAACTCGAGCGGTGTGTATAATGAGCCATCCTATTCCAGACACAAATGATGCTCACTCGGTTCAAATCATTCTTCCTCAGAAGCAACTCGGTCGCAAATCAGACATGTACTTGTTCTGTTGCTCATACGCTCACAATGTGGCACCAAAGGGCAAATACATAGCTTTTGTCTCTGCAGAAGCTGAAACTGACAATCCAGAAGAGGAGCTTAAACCCGGAATCGAATTGCTTGGACCTACTGATGAGATCTTCTATCATTCTTATGACACATACGTTCCAACCAATATTCAAGAAGAAGATAACTGTTTCATCTCTGCTACTTACGATGCAACAACACATTTCGAGAGTACAGTTGTAGATGTACTTGACATGTACACCAAGATCACTGGAAAGACTCTTGATTTGTCTGTGGACTTGAGTGCTGCAAGTGCTGCTGCAGAGAATTGA

Protein Analysis

445

Amino Acids

49.55

Weight (kDa)

5.11

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 1 - 433 7.5e-227 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 1033
AccBSI CCGCTC 1 cut(s) 902
AccI GTMKAC 1 cut(s) 327
AciI CCGC 3 cut(s) 600, 635, 902
AclWI GGATC 7 cut(s) 220, 452, 465, 600, 657, 670, 845
AcuI CTGAAG 1 cut(s) 204
AdeI CACNNNGTG 1 cut(s) 1030
AfaI GTAC 7 cut(s) 90, 686, 734, 1001, 1240, 1254, 1265
AfeI AGCGCT 1 cut(s) 567
AfiI CCNNNNNNNGG 2 cut(s) 392, 686
AflII CTTAAG 1 cut(s) 41
AflIII ACRYGT 2 cut(s) 996, 1260
AgsI TTSAA 4 cut(s) 263, 530, 956, 1181
AjiI CACGTC 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AleI CACNNNNGTG 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AluBI AGCT 8 cut(s) 151, 321, 628, 700, 797, 1055, 1073, 1099
AluI AGCT 8 cut(s) 151, 321, 628, 700, 797, 1055, 1073, 1099
Alw26I GTCTC 3 cut(s) 471, 645, 1066
AlwI GGATC 7 cut(s) 220, 452, 465, 600, 657, 670, 845
AlwNI CAGNNNCTG 2 cut(s) 362, 1073
Ama87I CYCGRG 1 cut(s) 897
Aor51HI AGCGCT 1 cut(s) 567
AoxI GGCC 3 cut(s) 61, 79, 306
ApeKI GCWGC 4 cut(s) 700, 1313, 1322, 1325
ArsI GACNNNNNNTTYG 2 cut(s) 1276, 1308
AspLEI GCGC 1 cut(s) 568
AspS9I GGNCC 1 cut(s) 1124
AsuC2I CCSGG 1 cut(s) 1107
AvaI CYCGRG 1 cut(s) 897
AvaII GGWCC 1 cut(s) 1124
BamHI GGATCC 2 cut(s) 457, 662
BanI GGYRCC 1 cut(s) 1033
BbvI GCAGC 4 cut(s) 687, 1300, 1309, 1312
BccI CCATC 5 cut(s) 71, 308, 385, 776, 927
BceAI ACGGC 1 cut(s) 293
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciVI GTATCC 1 cut(s) 62
BcnI CCSGG 1 cut(s) 1107
BcoDI GTCTC 3 cut(s) 471, 645, 1066
BfaI CTAG 2 cut(s) 501, 692
BfmI CTRYAG 3 cut(s) 813, 1065, 1326
BfoI RGCGCY 1 cut(s) 569
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 62
BglII AGATCT 2 cut(s) 342, 1137
BisI GCNGC 4 cut(s) 701, 1314, 1323, 1326
BlsI GCNGC 4 cut(s) 702, 1315, 1324, 1327
Bme1390I CCNGG 1 cut(s) 1107
Bme18I GGWCC 1 cut(s) 1124
BmeT110I CYCGRG 1 cut(s) 897
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 1124
BmiI GGNNCC 3 cut(s) 459, 664, 1035
BmrFI CCNGG 1 cut(s) 1107
BmsI GCATC 2 cut(s) 931, 1207
BplI GAGNNNNNCTC 2 cut(s) 497, 529
Bpu10I CCTNAGC 2 cut(s) 485, 562
BpuEI CTTGAG 2 cut(s) 68, 1327
BpuMI CCSGG 1 cut(s) 1107
BsaJI CCNNGG 2 cut(s) 28, 655
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 686
Bse1I ACTGG 2 cut(s) 40, 1282
BseDI CCNNGG 2 cut(s) 28, 655
BseGI GGATG 3 cut(s) 10, 128, 919
BseLI CCNNNNNNNGG 2 cut(s) 392, 686
BseMII CTCAG 2 cut(s) 161, 983
BseNI ACTGG 2 cut(s) 40, 1282
BseRI GAGGAG 3 cut(s) 56, 135, 1109
BseXI GCAGC 4 cut(s) 687, 1300, 1309, 1312
BseYI CCCAGC 1 cut(s) 355
Bsh1285I CGRYCG 1 cut(s) 985
BshFI GGCC 3 cut(s) 63, 81, 308
BshNI GGYRCC 1 cut(s) 1033
BsiEI CGRYCG 1 cut(s) 985
BsiHKCI CYCGRG 1 cut(s) 897
BsiSI CCGG 1 cut(s) 1107
BslFI GGGAC 3 cut(s) 46, 338, 754
BslI CCNNNNNNNGG 2 cut(s) 392, 686
BsmAI GTCTC 3 cut(s) 471, 645, 1066
BsmFI GGGAC 3 cut(s) 46, 338, 754
BsmI GAATGC 1 cut(s) 770
BsnI GGCC 3 cut(s) 63, 81, 308
BsoBI CYCGRG 1 cut(s) 897
Bsp1407I TGTACA 1 cut(s) 1263
Bsp143I GATC 9 cut(s) 225, 342, 457, 507, 592, 662, 850, 1137, 1272
BspACI CCGC 3 cut(s) 600, 635, 902
BspANI GGCC 3 cut(s) 63, 81, 308
BspCNI CTCAG 2 cut(s) 160, 982
BspLI GGNNCC 3 cut(s) 459, 664, 1035
BspMAI CTGCAG 3 cut(s) 817, 1069, 1330
BspPI GGATC 7 cut(s) 220, 452, 465, 600, 657, 670, 845
BspT107I GGYRCC 1 cut(s) 1033
BspTI CTTAAG 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 902
BsrGI TGTACA 1 cut(s) 1263
BsrI ACTGG 2 cut(s) 40, 1282
BssECI CCNNGG 2 cut(s) 28, 655
BssMI GATC 9 cut(s) 225, 342, 457, 507, 592, 662, 850, 1137, 1272
BssT1I CCWWGG 2 cut(s) 28, 655
Bst4CI ACNGT 4 cut(s) 689, 737, 1196, 1243
Bst6I CTCTTC 2 cut(s) 3, 1086
BstAFI CTTAAG 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 1322
BstAUI TGTACA 1 cut(s) 1263
BstC8I GCNNGC 2 cut(s) 202, 558
BstDEI CTNAG 6 cut(s) 56, 147, 462, 485, 562, 969
BstF5I GGATG 3 cut(s) 10, 128, 919
BstH2I RGCGCY 1 cut(s) 569
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 9 cut(s) 228, 345, 460, 510, 595, 665, 853, 1140, 1275
BstMAI GTCTC 3 cut(s) 471, 645, 1066
BstMBI GATC 9 cut(s) 225, 342, 457, 507, 592, 662, 850, 1137, 1272
BstMCI CGRYCG 1 cut(s) 985
BstMWI GCNNNNNNNGC 4 cut(s) 157, 757, 1319, 1322
BstNSI RCATGY 4 cut(s) 560, 751, 1000, 1264
BstSCI CCNGG 1 cut(s) 1105
BstSFI CTRYAG 3 cut(s) 813, 1065, 1326
BstV1I GCAGC 4 cut(s) 687, 1300, 1309, 1312
BstX2I RGATCY 4 cut(s) 342, 457, 662, 1137
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 4 cut(s) 342, 457, 662, 1137
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 3 cut(s) 63, 81, 308
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 3 cut(s) 10, 128, 919
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 3 cut(s) 360, 495, 1275
Cac8I GCNNGC 2 cut(s) 202, 558
CaiI CAGNNNCTG 2 cut(s) 362, 1073
CfoI GCGC 1 cut(s) 568
Cfr13I GGNCC 1 cut(s) 1124
Csp6I GTAC 7 cut(s) 89, 685, 733, 1000, 1239, 1253, 1264
CviAII CATG 4 cut(s) 557, 748, 997, 1261
CviQI GTAC 7 cut(s) 89, 685, 733, 1000, 1239, 1253, 1264
DdeI CTNAG 6 cut(s) 56, 147, 462, 485, 562, 969
DpnI GATC 9 cut(s) 227, 344, 459, 509, 594, 664, 852, 1139, 1274
DpnII GATC 9 cut(s) 225, 342, 457, 507, 592, 662, 850, 1137, 1272
DraIII CACNNNGTG 1 cut(s) 1030
Eam1104I CTCTTC 2 cut(s) 3, 1086
EarI CTCTTC 2 cut(s) 3, 1086
Eco130I CCWWGG 2 cut(s) 28, 655
Eco47I GGWCC 1 cut(s) 1124
Eco47III AGCGCT 1 cut(s) 567
Eco57I CTGAAG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 897
EcoT14I CCWWGG 2 cut(s) 28, 655
ErhI CCWWGG 2 cut(s) 28, 655
FaeI CATG 4 cut(s) 560, 751, 1000, 1264
FalI AAGNNNNNCTT 4 cut(s) 177, 209, 1083, 1115
FaqI GGGAC 3 cut(s) 46, 338, 754
FatI CATG 4 cut(s) 556, 747, 996, 1260
FauI CCCGC 1 cut(s) 607
FauNDI CATATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 4 cut(s) 701, 1314, 1323, 1326
FokI GGATG 3 cut(s) 17, 115, 906
Fsp4HI GCNGC 4 cut(s) 701, 1314, 1323, 1326
FspBI CTAG 2 cut(s) 501, 692
GlaI GCGC 1 cut(s) 567
GluI GCNGC 4 cut(s) 701, 1314, 1323, 1326
GsaI CCCAGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 569
HaeIII GGCC 3 cut(s) 63, 81, 308
HapII CCGG 1 cut(s) 1107
HhaI GCGC 1 cut(s) 568
Hin1II CATG 4 cut(s) 560, 751, 1000, 1264
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HinfI GANTC 7 cut(s) 125, 252, 621, 638, 651, 1110, 1285
HpaII CCGG 1 cut(s) 1107
Hpy166II GTNNAC 4 cut(s) 328, 733, 1266, 1303
Hpy188I TCNGA 3 cut(s) 868, 972, 994
Hpy188III TCNNGA 9 cut(s) 182, 403, 470, 789, 929, 1088, 1181, 1234, 1289
Hpy8I GTNNAC 4 cut(s) 328, 733, 1266, 1303
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 3 cut(s) 448, 467, 864
HpyCH4III ACNGT 4 cut(s) 689, 737, 1196, 1243
HpyCH4IV ACGT 3 cut(s) 412, 718, 1164
HpyCH4V TGCA 9 cut(s) 439, 716, 768, 815, 834, 1067, 1220, 1316, 1328
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 757, 1319, 1322
HpyF3I CTNAG 6 cut(s) 56, 147, 462, 485, 562, 969
HpySE526I ACGT 3 cut(s) 412, 718, 1164
Hsp92II CATG 4 cut(s) 560, 751, 1000, 1264
HspAI GCGC 1 cut(s) 566
Kzo9I GATC 9 cut(s) 225, 342, 457, 507, 592, 662, 850, 1137, 1272
LmnI GCTCC 2 cut(s) 197, 1096
Lsp1109I GCAGC 4 cut(s) 687, 1300, 1309, 1312
LweI GCATC 2 cut(s) 931, 1207
MaeI CTAG 2 cut(s) 501, 692
MaeII ACGT 3 cut(s) 412, 718, 1164
MaeIII GTNAC 5 cut(s) 173, 283, 493, 805, 892
MalI GATC 9 cut(s) 227, 344, 459, 509, 594, 664, 852, 1139, 1274
MbiI CCGCTC 1 cut(s) 902
MboI GATC 9 cut(s) 225, 342, 457, 507, 592, 662, 850, 1137, 1272
MboII GAAGA 8 cut(s) 20, 197, 542, 956, 1103, 1132, 1196, 1199
MflI RGATCY 4 cut(s) 342, 457, 662, 1137
MluCI AATT 2 cut(s) 1115, 1333
MlyI GAGTC 3 cut(s) 246, 647, 1279
MmeI TCCRAC 2 cut(s) 865, 1193
MnlI CCTC 9 cut(s) 74, 77, 92, 113, 142, 152, 653, 978, 1087
MseI TTAA 7 cut(s) 42, 138, 297, 303, 615, 876, 1101
MslI CAYNNNNRTG 4 cut(s) 279, 365, 576, 1152
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 1 cut(s) 1107
MspR9I CCNGG 1 cut(s) 1107
Mva1269I GAATGC 1 cut(s) 770
MwoI GCNNNNNNNGC 4 cut(s) 157, 757, 1319, 1322
NciI CCSGG 1 cut(s) 1107
NdeI CATATG 1 cut(s) 96
NdeII GATC 9 cut(s) 225, 342, 457, 507, 592, 662, 850, 1137, 1272
NlaIII CATG 4 cut(s) 560, 751, 1000, 1264
NlaIV GGNNCC 3 cut(s) 459, 664, 1035
NmuCI GTSAC 3 cut(s) 173, 493, 805
NspI RCATGY 4 cut(s) 560, 751, 1000, 1264
OliI CACNNNNGTG 1 cut(s) 365
PaeI GCATGC 1 cut(s) 560
PaeR7I CTCGAG 1 cut(s) 897
PciI ACATGT 2 cut(s) 996, 1260
PctI GAATGC 1 cut(s) 770
PfeI GAWTC 4 cut(s) 125, 621, 651, 1110
PkrI GCNGC 4 cut(s) 702, 1315, 1324, 1327
PleI GAGTC 3 cut(s) 246, 646, 1279
PpsI GAGTC 3 cut(s) 246, 646, 1279
PscI ACATGT 2 cut(s) 996, 1260
PsiI TTATAA 1 cut(s) 239
PspFI CCCAGC 1 cut(s) 355
PspN4I GGNNCC 3 cut(s) 459, 664, 1035
PspPI GGNCC 1 cut(s) 1124
PspXI VCTCGAGB 1 cut(s) 897
PstI CTGCAG 3 cut(s) 817, 1069, 1330
PstNI CAGNNNCTG 2 cut(s) 362, 1073
PsuI RGATCY 4 cut(s) 342, 457, 662, 1137
RsaI GTAC 7 cut(s) 90, 686, 734, 1001, 1240, 1254, 1265
RsaNI GTAC 7 cut(s) 89, 685, 733, 1000, 1239, 1253, 1264
RseI CAYNNNNRTG 4 cut(s) 279, 365, 576, 1152
SaqAI TTAA 7 cut(s) 42, 138, 297, 303, 615, 876, 1101
SatI GCNGC 4 cut(s) 701, 1314, 1323, 1326
Sau3AI GATC 9 cut(s) 225, 342, 457, 507, 592, 662, 850, 1137, 1272
Sau96I GGNCC 1 cut(s) 1124
SchI GAGTC 3 cut(s) 246, 647, 1279
ScrFI CCNGG 1 cut(s) 1107
SfaNI GCATC 2 cut(s) 931, 1207
SfcI CTRYAG 3 cut(s) 813, 1065, 1326
Sfr274I CTCGAG 1 cut(s) 897
SinI GGWCC 1 cut(s) 1124
SlaI CTCGAG 1 cut(s) 897
SmiMI CAYNNNNRTG 4 cut(s) 279, 365, 576, 1152
SmlI CTYRAG 4 cut(s) 41, 83, 897, 1306
SmoI CTYRAG 4 cut(s) 41, 83, 897, 1306
SphI GCATGC 1 cut(s) 560
Sse9I AATT 2 cut(s) 1115, 1333
SsiI CCGC 3 cut(s) 600, 635, 902
SspI AATATT 1 cut(s) 1177
SspMI CTAG 2 cut(s) 501, 692
StyD4I CCNGG 1 cut(s) 1105
StyI CCWWGG 2 cut(s) 28, 655
TaaI ACNGT 4 cut(s) 689, 737, 1196, 1243
TaiI ACGT 3 cut(s) 415, 721, 1167
TaqI TCGA 8 cut(s) 75, 219, 402, 543, 649, 898, 1113, 1233
TaqII GACCGA 1 cut(s) 971
TasI AATT 2 cut(s) 1115, 1333
TatI WGTACW 4 cut(s) 999, 1238, 1252, 1263
TfiI GAWTC 4 cut(s) 125, 621, 651, 1110
Tru1I TTAA 7 cut(s) 42, 138, 297, 303, 615, 876, 1101
Tru9I TTAA 7 cut(s) 42, 138, 297, 303, 615, 876, 1101
TscAI CASTG 3 cut(s) 367, 502, 1282
TseFI GTSAC 3 cut(s) 173, 493, 805
TseI GCWGC 4 cut(s) 700, 1313, 1322, 1325
Tsp45I GTSAC 3 cut(s) 173, 493, 805
TspDTI ATGAA 3 cut(s) 21, 538, 1189
TspGWI ACGGA 1 cut(s) 669
TspRI CASTG 3 cut(s) 367, 502, 1282
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 1124
XceI RCATGY 4 cut(s) 560, 751, 1000, 1264
XhoI CTCGAG 1 cut(s) 897
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 2 cut(s) 501, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.