Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000239.1

Orthogroup ID

OG0004580

Physical Location & Seq

Genomic Coordinates Forward (+)

423059 .. 423421

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000239.1_g000071.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgggccacaacttcttatgggagacgacggagcctccgcagtcgccaagccctagcttcggcaagcctagggtcccgcggaagcataaagcctcgaaggagaacacgcctcagtcttcagatctcaactatacgatcttcgattcgaagccttcgcccacggccaagttgaagagtctgctgccgccgcggccaccaacgtcaaatcctctcgaacggaagctcgagatgctccctgagaactccgtccatggagcatctgattctggcgtccgcgaccgcttccgcttttctttaatcctgagattgataatttgggaaatcagtttgttttgtgtgaaatcttgtggtttttgcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000280 GO:0000910 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008574 GO:0009524 GO:0009555 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033206 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0051301 GO:0051321 GO:0051704 GO:0055046 GO:0061640 GO:0071840 GO:0080175 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

120

Amino Acids

13.55

Weight (kDa)

9.55

Isoelectric Point (pI)

61.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09550
fragaria_vesca	FvH4_1g19700
malus_domestica	MD01G1038700.v1.1 MD15G1313100.v1.1
prunus_persica	Prupe.6G201200_v2.0.a1 Prupe.8G069400_v2.0.a1 Prupe.8G069400_v2.0.a1
pyrus_communis	pycom01g06660 pycom15g27650
rosa_chinensis	RchiOBHm_Chr2g0111261 RchiOBHm_Chr6g0271061
rosa_laevigata	RLG00000013748 RLG00000017880
rosa_multiflora	Rmu_co8304329.1_g000001 Rmu_sc0000239.1_g000071 Rmu_sc0000744.1_g000066 Rmu_sc0001476.1_g000004 Rmu_sc0001721.1_g000013 Rmu_sc0002882.1_g000016 Rmu_sc0004447.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132560 Rroxscaffold_7G00197320
rosa_rugosa	Rorug02G0172200 Rorug02G0172300 Rorug06G0058200
rosa_samantha	Rh2BG237100 Rh2DG232700 Rh6DG169400
rosa_wichuraiana	Rw0G009900 Rw2G017390 Rw6G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	79, 190, 276
AciI	CCGC	9 cut(s)	38, 77, 79, 185, 188, 190, 274, 280, 286
AcoI	YGGCCR	2 cut(s)	162, 191
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	57, 223
AluI	AGCT	2 cut(s)	57, 223
Alw26I	GTCTC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	3 cut(s)	4, 162, 191
ApeKI	GCWGC	1 cut(s)	181
AspA2I	CCTAGG	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	4, 73
AsuII	TTCGAA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	73
AvrII	CCTAGG	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	54, 69
BglI	GCCNNNNNGGC	1 cut(s)	190
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	4 cut(s)	182, 185, 188, 191
BlnI	CCTAGG	1 cut(s)	68
BlsI	GCNGC	4 cut(s)	183, 186, 189, 192
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	4, 73
BmiI	GGNNCC	3 cut(s)	33, 74, 75
BmsI	GCATC	2 cut(s)	219, 266
BpiI	GAAGAC	1 cut(s)	108
Bpu14I	TTCGAA	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	5 cut(s)	68, 77, 159, 188, 250
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
BseDI	CCNNGG	5 cut(s)	68, 77, 159, 188, 250
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	3 cut(s)	125, 228, 293
BseXI	GCAGC	1 cut(s)	168
Bsh1236I	CGCG	3 cut(s)	79, 190, 276
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	3 cut(s)	6, 164, 193
BsiEI	CGRYCG	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	6, 164, 193
BsoBI	CYCGRG	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	121, 135
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	9 cut(s)	38, 77, 79, 185, 188, 190, 274, 280, 286
BspANI	GGCC	3 cut(s)	6, 164, 193
BspCNI	CTCAG	3 cut(s)	124, 229, 294
BspFNI	CGCG	3 cut(s)	79, 190, 276
BspLI	GGNNCC	3 cut(s)	33, 74, 75
BspT104I	TTCGAA	1 cut(s)	146
BssECI	CCNNGG	5 cut(s)	68, 77, 159, 188, 250
BssMI	GATC	2 cut(s)	121, 135
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	68, 250
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	111, 237, 302
BstDSI	CCRYGG	4 cut(s)	77, 159, 188, 250
BstFNI	CGCG	3 cut(s)	79, 190, 276
BstKTI	GATC	2 cut(s)	124, 138
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	121, 135
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 190, 229
BstUI	CGCG	3 cut(s)	79, 190, 276
BstV1I	GCAGC	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	6, 164, 193
BtgI	CCRYGG	4 cut(s)	77, 159, 188, 250
Cac8I	GCNNGC	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	4, 73
Cfr42I	CCGCGG	2 cut(s)	80, 191
CseI	GACGC	1 cut(s)	259
CviAII	CATG	1 cut(s)	251
DdeI	CTNAG	3 cut(s)	111, 237, 302
DpnI	GATC	2 cut(s)	123, 137
DpnII	GATC	2 cut(s)	121, 135
EaeI	YGGCCR	2 cut(s)	162, 191
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	68, 250
Eco47I	GGWCC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	68, 250
ErhI	CCWWGG	2 cut(s)	68, 250
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	1 cut(s)	254
FaiI	YATR	4 cut(s)	19, 87, 132, 252
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	250
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	182, 185, 188, 191
Fsp4HI	GCNGC	4 cut(s)	182, 185, 188, 191
FspBI	CTAG	2 cut(s)	54, 69
GluI	GCNGC	4 cut(s)	182, 185, 188, 191
HaeIII	GGCC	3 cut(s)	6, 164, 193
HgaI	GACGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	254
HinfI	GANTC	3 cut(s)	143, 175, 263
Hpy188I	TCNGA	2 cut(s)	121, 262
Hpy188III	TCNNGA	3 cut(s)	212, 226, 301
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	91, 162
HpyCH4IV	ACGT	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 190, 229
HpyF3I	CTNAG	3 cut(s)	111, 237, 302
HpySE526I	ACGT	1 cut(s)	200
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	254
KflI	GGGWCCC	1 cut(s)	73
KspI	CCGCGG	2 cut(s)	80, 191
Kzo9I	GATC	2 cut(s)	121, 135
LmnI	GCTCC	3 cut(s)	31, 237, 254
LpnPI	CCDG	3 cut(s)	249, 252, 314
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	219, 266
MaeI	CTAG	2 cut(s)	54, 69
MaeII	ACGT	1 cut(s)	200
MalI	GATC	2 cut(s)	123, 137
MboI	GATC	2 cut(s)	121, 135
MboII	GAAGA	3 cut(s)	108, 130, 184
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	4 cut(s)	45, 103, 120, 219
MseI	TTAA	1 cut(s)	296
MspA1I	CMGCKG	2 cut(s)	79, 190
MvnI	CGCG	3 cut(s)	79, 190, 276
MwoI	GCNNNNNNNGC	3 cut(s)	187, 190, 229
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	2 cut(s)	121, 135
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	3 cut(s)	33, 74, 75
NspV	TTCGAA	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	143, 263
PkrI	GCNGC	4 cut(s)	183, 186, 189, 192
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	33, 74, 75
PspPI	GGNCC	2 cut(s)	4, 73
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	121
SacII	CCGCGG	2 cut(s)	80, 191
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	4 cut(s)	182, 185, 188, 191
Sau3AI	GATC	2 cut(s)	121, 135
Sau96I	GGNCC	2 cut(s)	4, 73
SchI	GAGTC	1 cut(s)	184
SetI	ASST	3 cut(s)	59, 203, 225
SfaNI	GCATC	2 cut(s)	219, 266
Sfr274I	CTCGAG	1 cut(s)	224
Sfr303I	CCGCGG	2 cut(s)	80, 191
SfuI	TTCGAA	1 cut(s)	146
SgrBI	CCGCGG	2 cut(s)	80, 191
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	9 cut(s)	38, 77, 79, 185, 188, 190, 274, 280, 286
SspMI	CTAG	2 cut(s)	54, 69
StyI	CCWWGG	2 cut(s)	68, 250
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	5 cut(s)	95, 141, 146, 213, 225
TasI	AATT	1 cut(s)	312
TauI	GCSGC	3 cut(s)	187, 190, 193
TfiI	GAWTC	2 cut(s)	143, 263
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseI	GCWGC	1 cut(s)	181
TspGWI	ACGGA	3 cut(s)	44, 232, 235
VpaK11BI	GGWCC	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	224
XmaJI	CCTAGG	1 cut(s)	68
XspI	CTAG	2 cut(s)	54, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.