Rh6DG169400

Guanosine nucleotide diphosphate dissociation inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004580
Physical Location & Seq
Reverse (-)
26247932 .. 26252406
4475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG169400.1

Sequence Viewer

Length: 1251 bp
ATGGATGAAGAGTACGACATCATTGTTTTAGGGACGGGTCTCAAGGAGTGCATTCTCAGTGGCCTTCTGTCTGTTGATGGCCTCAAAGTTTTGCATATGGATAGAAATGACTACTATGGAGGAGCATCGACCTCTCTTAATCTTACACAACTTTGGAAGCGTTTTAGAGGAGATGACAAACCTCCAGAGCAATTGGGGTCTAGTAAGGAGTACAACGTTGACATGATACCAAAGTTCATGATGGCCAATGGCGGTTTGGTCCGTGTCCTGATCCACACAAATGTCACCAAATATCTTAATTTTAAGGCTGTTGATGGTAGTTTTGTGTATAACAAGAAAAAGATCTATAAAGTTCCAGCAACTGATGTTGAAGCACTAAAATCACCATTGATGGGGCTCTTTGAAAAGCGTCGTGCACGAAAGTTCTTCATTTATGTCCAAGACTTTGAAGAGAGTGATCCCAAATCTCATGAAGGACTAGATTTGCATAAAGTTACAGCAAGAGAGCTTATCTCGAAATATGAGCTAGAGGATGATACTATTGATTTTATTGGTCATGCTTTGGCACTTCATATTGATGATTCTTACCTAGATGAGCCAGCCATGGAGTTTGTGAAGAAAATGAAGCTCTATGCAGAGTCTCTGGCACGTTTTCAAGGAGGATCCCCTTATATCTATCCATTGTATGGATTGGGGGAGTTGCCGCAGGCTTTTGCACGTTTAAGTGCAGTTTATGGTGGAACTTACATGCTCAACAAACCGGATTGTAAGGTGAAATTTGATGATAATGGAAAGGCTGTTGGTGTGACCTCAGAAGGAGAAACCGCTAAATGCAAGAAAGTGGTTTGTGATCCCTCATATTTACCTGATAAGGTACAGAAAATTGGAAAAGTTGCTCGTGCTATATGTATAATGAGTCATCCTATTCCGGAGACCGATGATTCTCACTCAGTCCAAGTTATTTTGCCACAGAAGCAACTTGGTCGTAAATCAGATATGTACCTGTTTTGTTGCTCTTATGCTCATAATGTTGCTCCAAAAGGAAAATTCATCGCCTTTGTTTCAACGATAGCAGAGACCGATAATCCTAAAGTTGAATTAAAGCCTGGCATTGATCTACTTGGTCCTATAGATGAAATCTTCTATGACTCTTATGACAGATACATACCCAATAATGACCATGAAGGCGACAGTTGCTACTTATCTACCGTAAGTAGATTTACTATGCCTCATTTGTCACATTATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDI

Protein Analysis

416

Amino Acids

46.92

Weight (kDa)

6.03

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 1 - 404 8.6e-211 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 686
AccIII TCCGGA 1 cut(s) 928
AciI CCGC 3 cut(s) 252, 704, 825
AclI AACGTT 1 cut(s) 216
AclWI GGATC 5 cut(s) 265, 452, 657, 670, 845
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 2 cut(s) 776, 1046
AfaI GTAC 4 cut(s) 14, 212, 876, 1001
AfiI CCNNNNNNNGG 2 cut(s) 392, 686
AgsI TTSAA 6 cut(s) 371, 404, 449, 656, 1065, 1097
AjnI CCWGG 1 cut(s) 1105
AluBI AGCT 3 cut(s) 508, 526, 628
AluI AGCT 3 cut(s) 508, 526, 628
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 4 cut(s) 44, 645, 926, 1070
Alw44I GTGCAC 1 cut(s) 414
AlwI GGATC 5 cut(s) 265, 452, 657, 670, 845
AlwNI CAGNNNCTG 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 928
AoxI GGCC 3 cut(s) 61, 79, 243
ApaLI GTGCAC 1 cut(s) 414
ApoI RAATTY 2 cut(s) 776, 1046
AspS9I GGNCC 2 cut(s) 259, 1124
AsuHPI GGTGA 3 cut(s) 277, 375, 784
AvaII GGWCC 2 cut(s) 259, 1124
BaeGI GKGCMC 1 cut(s) 418
BaeI ACNNNNGTAYC 2 cut(s) 218, 251
BalI TGGCCA 1 cut(s) 245
BamHI GGATCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 399
BauI CACGAG 1 cut(s) 897
Bbv12I GWGCWC 1 cut(s) 418
BccI CCATC 4 cut(s) 71, 235, 308, 385
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 1 cut(s) 1107
BcoDI GTCTC 4 cut(s) 44, 645, 926, 1070
BfaI CTAG 4 cut(s) 201, 479, 527, 590
BfmI CTRYAG 1 cut(s) 1128
BglII AGATCT 1 cut(s) 342
BisI GCNGC 1 cut(s) 704
BlsI GCNGC 1 cut(s) 705
Bme1390I CCNGG 1 cut(s) 1107
Bme18I GGWCC 2 cut(s) 259, 1124
BmgT120I GGNCC 2 cut(s) 259, 1124
BmiI GGNNCC 1 cut(s) 664
BmrFI CCNGG 1 cut(s) 1107
BmsI GCATC 1 cut(s) 134
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpmI CTGGAG 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 26
BsaI GGTCTC 3 cut(s) 44, 926, 1070
BsaJI CCNNGG 1 cut(s) 603
BsaWI WCCGGW 2 cut(s) 760, 928
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 686
BseAI TCCGGA 1 cut(s) 928
BseBI CCWGG 1 cut(s) 1107
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 3 cut(s) 10, 538, 919
BseLI CCNNNNNNNGG 2 cut(s) 392, 686
BseMII CTCAG 3 cut(s) 70, 825, 963
BseRI GAGGAG 2 cut(s) 135, 183
BseSI GKGCMC 1 cut(s) 418
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 3 cut(s) 63, 81, 245
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 2 cut(s) 761, 929
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 392, 686
BsmAI GTCTC 4 cut(s) 44, 645, 926, 1070
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 3 cut(s) 63, 81, 245
Bso31I GGTCTC 3 cut(s) 44, 926, 1070
Bsp1286I GDGCHC 2 cut(s) 399, 418
Bsp13I TCCGGA 1 cut(s) 928
Bsp143I GATC 6 cut(s) 270, 342, 457, 662, 850, 1114
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 3 cut(s) 252, 704, 825
BspANI GGCC 3 cut(s) 63, 81, 245
BspCNI CTCAG 3 cut(s) 69, 824, 962
BspEI TCCGGA 1 cut(s) 928
BspHI TCATGA 2 cut(s) 237, 469
BspLI GGNNCC 1 cut(s) 664
BspPI GGATC 5 cut(s) 265, 452, 657, 670, 845
BspTNI GGTCTC 3 cut(s) 44, 926, 1070
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 6 cut(s) 270, 342, 457, 662, 850, 1114
BssSI CACGAG 1 cut(s) 897
BssT1I CCWWGG 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 897
Bst2UI CCWGG 1 cut(s) 1107
Bst4CI ACNGT 2 cut(s) 1193, 1210
Bst6I CTCTTC 2 cut(s) 3, 444
BstC8I GCNNGC 2 cut(s) 600, 708
BstDEI CTNAG 3 cut(s) 56, 811, 949
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 10, 538, 919
BstKTI GATC 6 cut(s) 273, 345, 460, 665, 853, 1117
BstMAI GTCTC 4 cut(s) 44, 645, 926, 1070
BstMBI GATC 6 cut(s) 270, 342, 457, 662, 850, 1114
BstMWI GCNNNNNNNGC 2 cut(s) 973, 1194
BstNI CCWGG 1 cut(s) 1107
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 1 cut(s) 1105
BstSFI CTRYAG 1 cut(s) 1128
BstSLI GKGCMC 1 cut(s) 418
BstX2I RGATCY 2 cut(s) 342, 662
BstYI RGATCY 2 cut(s) 342, 662
BsuRI GGCC 3 cut(s) 63, 81, 245
BtgI CCRYGG 1 cut(s) 603
BtgZI GCGATG 1 cut(s) 1036
BtsCI GGATG 3 cut(s) 10, 538, 919
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 600, 708
CaiI CAGNNNCTG 1 cut(s) 362
CciI TCATGA 2 cut(s) 237, 469
Cfr13I GGNCC 2 cut(s) 259, 1124
CseI GACGC 1 cut(s) 398
Csp6I GTAC 4 cut(s) 13, 211, 875, 1000
CviAII CATG 7 cut(s) 223, 238, 470, 557, 604, 748, 1181
CviQI GTAC 4 cut(s) 13, 211, 875, 1000
DdeI CTNAG 3 cut(s) 56, 811, 949
DpnI GATC 6 cut(s) 272, 344, 459, 664, 852, 1116
DpnII GATC 6 cut(s) 270, 342, 457, 662, 850, 1114
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 3, 444
EarI CTCTTC 2 cut(s) 3, 444
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 399
Eco31I GGTCTC 3 cut(s) 44, 926, 1070
Eco47I GGWCC 2 cut(s) 259, 1124
EcoRII CCWGG 1 cut(s) 1105
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 7 cut(s) 226, 241, 473, 560, 607, 751, 1184
FaqI GGGAC 1 cut(s) 46
FatI CATG 7 cut(s) 222, 237, 469, 556, 603, 747, 1180
FauNDI CATATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 704
FokI GGATG 3 cut(s) 17, 545, 906
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 704
FspBI CTAG 4 cut(s) 201, 479, 527, 590
GluI GCNGC 1 cut(s) 704
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 3 cut(s) 63, 81, 245
HapII CCGG 2 cut(s) 761, 929
HgaI GACGC 1 cut(s) 398
Hin1II CATG 7 cut(s) 226, 241, 473, 560, 607, 751, 1184
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 5 cut(s) 581, 638, 916, 941, 1148
HpaII CCGG 2 cut(s) 761, 929
HphI GGTGA 3 cut(s) 277, 375, 784
Hpy166II GTNNAC 2 cut(s) 220, 416
Hpy188I TCNGA 2 cut(s) 814, 994
Hpy188III TCNNGA 6 cut(s) 185, 238, 268, 470, 514, 929
Hpy8I GTNNAC 2 cut(s) 220, 416
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 4 cut(s) 74, 467, 809, 1178
HpyCH4III ACNGT 2 cut(s) 1193, 1210
HpyCH4IV ACGT 3 cut(s) 216, 649, 718
HpyCH4V TGCA 8 cut(s) 51, 94, 416, 487, 635, 716, 728, 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 973, 1194
HpyF3I CTNAG 3 cut(s) 56, 811, 949
HpySE526I ACGT 3 cut(s) 216, 649, 718
Hsp92II CATG 7 cut(s) 226, 241, 473, 560, 607, 751, 1184
Kpn2I TCCGGA 1 cut(s) 928
Kzo9I GATC 6 cut(s) 270, 342, 457, 662, 850, 1114
LmnI GCTCC 2 cut(s) 122, 1039
LweI GCATC 1 cut(s) 134
MaeI CTAG 4 cut(s) 201, 479, 527, 590
MaeII ACGT 3 cut(s) 216, 649, 718
MaeIII GTNAC 4 cut(s) 283, 493, 805, 1236
MalI GATC 6 cut(s) 272, 344, 459, 664, 852, 1116
MboI GATC 6 cut(s) 270, 342, 457, 662, 850, 1114
MboII GAAGA 5 cut(s) 20, 418, 461, 628, 1132
MfeI CAATTG 1 cut(s) 191
MflI RGATCY 2 cut(s) 342, 662
MhlI GDGCHC 2 cut(s) 399, 418
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 6 cut(s) 191, 298, 776, 882, 1046, 1097
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 3 cut(s) 647, 925, 1142
Mox20I TGGCCA 1 cut(s) 245
MroI TCCGGA 1 cut(s) 928
MscI TGGCCA 1 cut(s) 245
MseI TTAA 6 cut(s) 138, 297, 303, 722, 1100, 1249
MslI CAYNNNNRTG 2 cut(s) 279, 576
Msp20I TGGCCA 1 cut(s) 245
MspI CCGG 2 cut(s) 761, 929
MspR9I CCNGG 1 cut(s) 1107
MunI CAATTG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 51
MvaI CCWGG 1 cut(s) 1107
MwoI GCNNNNNNNGC 2 cut(s) 973, 1194
NcoI CCATGG 1 cut(s) 603
NdeI CATATG 1 cut(s) 96
NdeII GATC 6 cut(s) 270, 342, 457, 662, 850, 1114
NlaIII CATG 7 cut(s) 226, 241, 473, 560, 607, 751, 1184
NlaIV GGNNCC 1 cut(s) 664
NmuCI GTSAC 3 cut(s) 283, 805, 1236
NspI RCATGY 1 cut(s) 751
PagI TCATGA 2 cut(s) 237, 469
PctI GAATGC 1 cut(s) 51
PfeI GAWTC 2 cut(s) 581, 941
PflMI CCANNNNNTGG 1 cut(s) 686
PkrI GCNGC 1 cut(s) 705
PleI GAGTC 3 cut(s) 646, 924, 1142
PpsI GAGTC 3 cut(s) 646, 924, 1142
Psp1406I AACGTT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 1105
PspGI CCWGG 1 cut(s) 1105
PspN4I GGNNCC 1 cut(s) 664
PspPI GGNCC 2 cut(s) 259, 1124
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 2 cut(s) 342, 662
RsaI GTAC 4 cut(s) 14, 212, 876, 1001
RsaNI GTAC 4 cut(s) 13, 211, 875, 1000
RseI CAYNNNNRTG 2 cut(s) 279, 576
SaqAI TTAA 6 cut(s) 138, 297, 303, 722, 1100, 1249
SatI GCNGC 1 cut(s) 704
Sau3AI GATC 6 cut(s) 270, 342, 457, 662, 850, 1114
Sau96I GGNCC 2 cut(s) 259, 1124
SchI GAGTC 3 cut(s) 647, 925, 1142
ScrFI CCNGG 1 cut(s) 1107
SduI GDGCHC 2 cut(s) 399, 418
SfaNI GCATC 1 cut(s) 134
SfcI CTRYAG 1 cut(s) 1128
SinI GGWCC 2 cut(s) 259, 1124
SmiMI CAYNNNNRTG 2 cut(s) 279, 576
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 6 cut(s) 191, 298, 776, 882, 1046, 1097
SsiI CCGC 3 cut(s) 252, 704, 825
SspMI CTAG 4 cut(s) 201, 479, 527, 590
StyD4I CCNGG 1 cut(s) 1105
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 2 cut(s) 1193, 1210
TaiI ACGT 3 cut(s) 219, 652, 721
TaqI TCGA 2 cut(s) 128, 515
TaqII GACCGA 2 cut(s) 950, 1094
TasI AATT 6 cut(s) 191, 298, 776, 882, 1046, 1097
TatI WGTACW 1 cut(s) 210
TauI GCSGC 1 cut(s) 706
TfiI GAWTC 2 cut(s) 581, 941
Tru1I TTAA 6 cut(s) 138, 297, 303, 722, 1100, 1249
Tru9I TTAA 6 cut(s) 138, 297, 303, 722, 1100, 1249
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 3 cut(s) 283, 805, 1236
Tsp45I GTSAC 3 cut(s) 283, 805, 1236
TspDTI ATGAA 9 cut(s) 21, 226, 418, 486, 560, 638, 1039, 1149, 1197
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 686
VneI GTGCAC 1 cut(s) 414
VpaK11BI GGWCC 2 cut(s) 259, 1124
XapI RAATTY 2 cut(s) 776, 1046
XceI RCATGY 1 cut(s) 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XspI CTAG 4 cut(s) 201, 479, 527, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.