Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001476.1

Orthogroup ID

OG0004580

Physical Location & Seq

Genomic Coordinates Reverse (-)

19819 .. 20223

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001476.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgtctctctctccgtctattaccgctcctgctccaggctttatgggccacaacttcttacgggagacgacggagcctctgcagtcgccaagccctagctccggcaagcctagggtcccacggaagcataaagcctcgaaggagaacgcgcctccgtcttcagatctcaactatacggtcttcgattcgaagccttcgcccgcggccaagttgaagagtccgctgccgccgcggccaccaccgtcaaatcctctcgaacggaagctcgagatgctccctgagaactccgtccatggagcatctgattctggcgtccgcgaccgcttccgcttttctttaatcctgagattgctaatttgggaaatcggtttgttttgtgtgaaattgtgtggtttttgcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000280 GO:0000910 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008574 GO:0009524 GO:0009555 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033206 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0051301 GO:0051321 GO:0051704 GO:0055046 GO:0061640 GO:0071840 GO:0080175 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

134

Amino Acids

14.7

Weight (kDa)

9.72

Isoelectric Point (pI)

73.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09550
fragaria_vesca	FvH4_1g19700
malus_domestica	MD01G1038700.v1.1 MD15G1313100.v1.1
prunus_persica	Prupe.6G201200_v2.0.a1 Prupe.8G069400_v2.0.a1 Prupe.8G069400_v2.0.a1
pyrus_communis	pycom01g06660 pycom15g27650
rosa_chinensis	RchiOBHm_Chr2g0111261 RchiOBHm_Chr6g0271061
rosa_laevigata	RLG00000013748 RLG00000017880
rosa_multiflora	Rmu_co8304329.1_g000001 Rmu_sc0000239.1_g000071 Rmu_sc0000744.1_g000066 Rmu_sc0001476.1_g000004 Rmu_sc0001721.1_g000013 Rmu_sc0002882.1_g000016 Rmu_sc0004447.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132560 Rroxscaffold_7G00197320
rosa_rugosa	Rorug02G0172200 Rorug02G0172300 Rorug06G0058200
rosa_samantha	Rh2BG237100 Rh2DG232700 Rh6DG169400
rosa_wichuraiana	Rw0G009900 Rw2G017390 Rw6G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	26
AccII	CGCG	4 cut(s)	149, 203, 232, 318
AcoI	YGGCCR	2 cut(s)	204, 233
AcuI	CTGAAG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	35, 101
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	99, 265
AluI	AGCT	2 cut(s)	99, 265
Alw26I	GTCTC	2 cut(s)	9, 59
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	46, 204, 233
ApeKI	GCWGC	1 cut(s)	223
AspA2I	CCTAGG	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	46, 115
AsuII	TTCGAA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	115
AvrII	CCTAGG	1 cut(s)	110
BbsI	GAAGAC	2 cut(s)	150, 172
BbvI	GCAGC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	9, 59
BfaI	CTAG	2 cut(s)	96, 111
BfmI	CTRYAG	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	232
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	5 cut(s)	204, 224, 227, 230, 233
BlnI	CCTAGG	1 cut(s)	110
BlsI	GCNGC	5 cut(s)	205, 225, 228, 231, 234
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	46, 115
BmiI	GGNNCC	3 cut(s)	75, 116, 117
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	2 cut(s)	261, 308
BpiI	GAAGAC	2 cut(s)	150, 172
BpmI	CTGGAG	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	5 cut(s)	110, 119, 201, 230, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 101
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	5 cut(s)	110, 119, 201, 230, 292
BseLI	CCNNNNNNNGG	2 cut(s)	35, 101
BseMII	CTCAG	2 cut(s)	270, 335
BseXI	GCAGC	1 cut(s)	210
Bsh1236I	CGCG	4 cut(s)	149, 203, 232, 318
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	3 cut(s)	48, 206, 235
BsiEI	CGRYCG	1 cut(s)	322
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	35, 101
BsmAI	GTCTC	2 cut(s)	9, 59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	48, 206, 235
BsoBI	CYCGRG	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	163
Bsp19I	CCATGG	1 cut(s)	292
BspANI	GGCC	3 cut(s)	48, 206, 235
BspCNI	CTCAG	2 cut(s)	271, 336
BspFNI	CGCG	4 cut(s)	149, 203, 232, 318
BspLI	GGNNCC	3 cut(s)	75, 116, 117
BspMAI	CTGCAG	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	26
BssECI	CCNNGG	5 cut(s)	110, 119, 201, 230, 292
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	2 cut(s)	110, 292
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	178, 243
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	312
BstBI	TTCGAA	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	107, 201
BstDEI	CTNAG	2 cut(s)	279, 344
BstDSI	CCRYGG	4 cut(s)	119, 201, 230, 292
BstENI	CCTNNNNNAGG	1 cut(s)	33
BstFNI	CGCG	4 cut(s)	149, 203, 232, 318
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	9, 59
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 229, 232, 271
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	80
BstUI	CGCG	4 cut(s)	149, 203, 232, 318
BstV1I	GCAGC	1 cut(s)	210
BstV2I	GAAGAC	2 cut(s)	150, 172
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	3 cut(s)	48, 206, 235
BtgI	CCRYGG	4 cut(s)	119, 201, 230, 292
Cac8I	GCNNGC	2 cut(s)	107, 201
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	46, 115
Cfr42I	CCGCGG	2 cut(s)	204, 233
CseI	GACGC	1 cut(s)	301
CviAII	CATG	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	279, 344
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	2 cut(s)	204, 233
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco130I	CCWWGG	2 cut(s)	110, 292
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	110, 292
ErhI	CCWWGG	2 cut(s)	110, 292
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	1 cut(s)	296
FaiI	YATR	4 cut(s)	44, 129, 174, 294
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	1 cut(s)	292
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	5 cut(s)	204, 224, 227, 230, 233
Fsp4HI	GCNGC	5 cut(s)	204, 224, 227, 230, 233
FspBI	CTAG	2 cut(s)	96, 111
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	5 cut(s)	204, 224, 227, 230, 233
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	48, 206, 235
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	185, 217, 305
HpaII	CCGG	1 cut(s)	102
Hpy188I	TCNGA	2 cut(s)	163, 304
Hpy188III	TCNNGA	3 cut(s)	254, 268, 343
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	133, 204
HpyCH4III	ACNGT	2 cut(s)	178, 243
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 229, 232, 271
HpyF3I	CTNAG	2 cut(s)	279, 344
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	1 cut(s)	149
KflI	GGGWCCC	1 cut(s)	115
KspI	CCGCGG	2 cut(s)	204, 233
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	6 cut(s)	31, 37, 73, 104, 279, 296
LpnPI	CCDG	7 cut(s)	21, 42, 48, 115, 291, 294, 356
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	2 cut(s)	261, 308
MaeI	CTAG	2 cut(s)	96, 111
MalI	GATC	1 cut(s)	165
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	150, 172, 226
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	2 cut(s)	354, 383
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	4 cut(s)	87, 145, 162, 261
MseI	TTAA	1 cut(s)	338
MspA1I	CMGCKG	3 cut(s)	203, 223, 232
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	4 cut(s)	149, 203, 232, 318
MwoI	GCNNNNNNNGC	4 cut(s)	45, 229, 232, 271
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	3 cut(s)	75, 116, 117
NspV	TTCGAA	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	185, 305
PkrI	GCNGC	5 cut(s)	205, 225, 228, 231, 234
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	3 cut(s)	75, 116, 117
PspPI	GGNCC	2 cut(s)	46, 115
PspPPI	RGGWCCY	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	163
SacII	CCGCGG	2 cut(s)	204, 233
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	5 cut(s)	204, 224, 227, 230, 233
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	2 cut(s)	46, 115
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	2 cut(s)	101, 267
SfaNI	GCATC	2 cut(s)	261, 308
SfcI	CTRYAG	1 cut(s)	80
Sfr274I	CTCGAG	1 cut(s)	266
Sfr303I	CCGCGG	2 cut(s)	204, 233
SfuI	TTCGAA	1 cut(s)	188
SgrBI	CCGCGG	2 cut(s)	204, 233
SinI	GGWCC	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	354, 383
SspMI	CTAG	2 cut(s)	96, 111
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	2 cut(s)	110, 292
TaaI	ACNGT	2 cut(s)	178, 243
TaqI	TCGA	5 cut(s)	137, 183, 188, 255, 267
TasI	AATT	2 cut(s)	354, 383
TauI	GCSGC	4 cut(s)	206, 229, 232, 235
TfiI	GAWTC	2 cut(s)	185, 305
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TseI	GCWGC	1 cut(s)	223
TspGWI	ACGGA	5 cut(s)	86, 136, 144, 274, 277
VpaK11BI	GGWCC	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	266
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	2 cut(s)	96, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.