Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0004580

Physical Location & Seq

Genomic Coordinates Reverse (-)

231837 .. 236995

Gene Structure 5159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000066.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggcatacaagggcctgaggaagcaagaagtgtaccttgcagaagaagaagaagaagatggcggagatgtcaatctcactatagaggacttcaaagctgaagatgaagtgcacaaggatgctgcagactttgatgagaataatctcatctttatggccctggattcgaagccttcgtcggcggccaagttgaatagtctgttgccgccatggccacggccattaaatcctctcaaacggaagcttgagatgcttcctgagaactccgcccatggagcctctgattccggcgtcccgacccggtttctgaatcccatttggggtactttcgatttggcgcagtgcaagaaagatgtgaacttgactgtcagtgtggtcagagagctaatgggcgagcagcttttgaacggtgataaggctctctgtgtcgatgaaggatcggcctcggccgtgatggtgttgcaagatttggggtttcccaatgctcgtggtgtttatgaacaccgattcttcaccgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

173

Amino Acids

19.23

Weight (kDa)

4.62

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09550
fragaria_vesca	FvH4_1g19700
malus_domestica	MD01G1038700.v1.1 MD15G1313100.v1.1
prunus_persica	Prupe.6G201200_v2.0.a1 Prupe.8G069400_v2.0.a1 Prupe.8G069400_v2.0.a1
pyrus_communis	pycom01g06660 pycom15g27650
rosa_chinensis	RchiOBHm_Chr2g0111261 RchiOBHm_Chr6g0271061
rosa_laevigata	RLG00000013748 RLG00000017880
rosa_multiflora	Rmu_co8304329.1_g000001 Rmu_sc0000239.1_g000071 Rmu_sc0000744.1_g000066 Rmu_sc0001476.1_g000004 Rmu_sc0001721.1_g000013 Rmu_sc0002882.1_g000016 Rmu_sc0004447.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132560 Rroxscaffold_7G00197320
rosa_rugosa	Rorug02G0172200 Rorug02G0172300 Rorug06G0058200
rosa_samantha	Rh2BG237100 Rh2DG232700 Rh6DG169400
rosa_wichuraiana	Rw0G009900 Rw2G017390 Rw6G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	63, 182, 206, 267
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	4 cut(s)	183, 212, 218, 447
AcuI	CTGAAG	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	2 cut(s)	35, 325
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	3 cut(s)	94, 193, 406
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	4 cut(s)	98, 244, 385, 400
AluI	AGCT	4 cut(s)	98, 244, 385, 400
Alw21I	GWGCWC	1 cut(s)	114
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	445
AoxI	GGCC	7 cut(s)	13, 156, 183, 212, 218, 441, 447
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	122, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	2 cut(s)	13, 157
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	422, 505
AsuII	TTCGAA	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	214
BauI	CACGAG	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	109, 409
BccI	CCATC	2 cut(s)	53, 448
BceAI	ACGGC	2 cut(s)	233, 434
BciT130I	CCWGG	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	301
BfmI	CTRYAG	2 cut(s)	81, 123
BglI	GCCNNNNNGGC	1 cut(s)	211
BisI	GCNGC	4 cut(s)	123, 183, 206, 398
BlsI	GCNGC	4 cut(s)	124, 184, 207, 399
Bme1390I	CCNGG	2 cut(s)	161, 301
BmgT120I	GGNCC	2 cut(s)	13, 157
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	161, 301
BmsI	GCATC	2 cut(s)	109, 240
Bpu14I	TTCGAA	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	5 cut(s)	159, 209, 215, 271, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse21I	CCTNAGG	1 cut(s)	17
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	5 cut(s)	159, 209, 215, 271, 444
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	2 cut(s)	8, 249
BseSI	GKGCMC	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	109, 409
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	7 cut(s)	15, 158, 185, 214, 220, 443, 449
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	288, 301
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	7 cut(s)	15, 158, 185, 214, 220, 443, 449
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	437
Bsp19I	CCATGG	2 cut(s)	209, 271
BspACI	CCGC	4 cut(s)	63, 182, 206, 267
BspANI	GGCC	7 cut(s)	15, 158, 185, 214, 220, 443, 449
BspCNI	CTCAG	2 cut(s)	9, 250
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	445
BspT104I	TTCGAA	1 cut(s)	167
BssECI	CCNNGG	5 cut(s)	159, 209, 215, 271, 444
BssMI	GATC	1 cut(s)	437
BssNI	GRCGYC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	2 cut(s)	209, 271
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	367, 410
BstACI	GRCGYC	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	17, 258
BstDSI	CCRYGG	3 cut(s)	209, 215, 271
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	1 cut(s)	440
BstMBI	GATC	1 cut(s)	437
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 250, 275
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	159, 299
BstSFI	CTRYAG	2 cut(s)	81, 123
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	109, 409
BstZI	CGGCCG	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	7 cut(s)	15, 158, 185, 214, 220, 443, 449
BtgI	CCRYGG	3 cut(s)	209, 215, 271
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	347, 376
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	13, 157
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	34, 324
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	2 cut(s)	210, 272
CviQI	GTAC	2 cut(s)	34, 324
DdeI	CTNAG	2 cut(s)	17, 258
DpnI	GATC	1 cut(s)	439
DpnII	GATC	1 cut(s)	437
EaeI	YGGCCR	4 cut(s)	183, 212, 218, 447
EagI	CGGCCG	1 cut(s)	447
EciI	GGCGGA	2 cut(s)	78, 256
EclXI	CGGCCG	1 cut(s)	447
Eco130I	CCWWGG	2 cut(s)	209, 271
Eco52I	CGGCCG	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	209, 271
ErhI	CCWWGG	2 cut(s)	209, 271
FaeI	CATG	2 cut(s)	213, 275
FaiI	YATR	6 cut(s)	7, 83, 155, 211, 273, 498
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	209, 271
Fnu4HI	GCNGC	4 cut(s)	123, 183, 206, 398
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	123, 183, 206, 398
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	4 cut(s)	123, 183, 206, 398
HaeIII	GGCC	7 cut(s)	15, 158, 185, 214, 220, 443, 449
HapII	CCGG	2 cut(s)	288, 301
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	340
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	213, 275
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	4 cut(s)	164, 284, 310, 507
HpaII	CCGG	2 cut(s)	288, 301
HphI	GGTGA	2 cut(s)	422, 505
Hpy166II	GTNNAC	3 cut(s)	34, 112, 358
Hpy188I	TCNGA	3 cut(s)	283, 309, 380
Hpy188III	TCNNGA	2 cut(s)	257, 295
Hpy8I	GTNNAC	3 cut(s)	34, 112, 358
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	183, 428
HpyCH4III	ACNGT	2 cut(s)	367, 410
HpyCH4V	TGCA	5 cut(s)	41, 112, 125, 345, 463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 250, 275
HpyF3I	CTNAG	2 cut(s)	17, 258
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	213, 275
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	437
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	6 cut(s)	29, 146, 173, 270, 301, 314
Lsp1109I	GCAGC	2 cut(s)	109, 409
LweI	GCATC	2 cut(s)	109, 240
MalI	GATC	1 cut(s)	439
MboI	GATC	1 cut(s)	437
MboII	GAAGA	7 cut(s)	56, 59, 62, 65, 68, 113, 502
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	214
MluNI	TGGCCA	1 cut(s)	214
MnlI	CCTC	5 cut(s)	12, 79, 240, 289, 454
Mox20I	TGGCCA	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	214
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	2 cut(s)	117, 152
Msp20I	TGGCCA	1 cut(s)	214
MspI	CCGG	2 cut(s)	288, 301
MspR9I	CCNGG	2 cut(s)	161, 301
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	211, 250, 275
NciI	CCSGG	1 cut(s)	301
NcoI	CCATGG	2 cut(s)	209, 271
NdeII	GATC	1 cut(s)	437
NlaIII	CATG	2 cut(s)	213, 275
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	425
NspV	TTCGAA	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PfeI	GAWTC	4 cut(s)	164, 284, 310, 507
PkrI	GCNGC	4 cut(s)	124, 184, 207, 399
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	13, 157
PstI	CTGCAG	1 cut(s)	127
RsaI	GTAC	2 cut(s)	35, 325
RsaNI	GTAC	2 cut(s)	34, 324
RseI	CAYNNNNRTG	2 cut(s)	117, 152
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	4 cut(s)	123, 183, 206, 398
Sau3AI	GATC	1 cut(s)	437
Sau96I	GGNCC	2 cut(s)	13, 157
ScrFI	CCNGG	2 cut(s)	161, 301
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	5 cut(s)	39, 100, 246, 387, 402
SfaNI	GCATC	2 cut(s)	109, 240
SfcI	CTRYAG	2 cut(s)	81, 123
SfuI	TTCGAA	1 cut(s)	167
SmiMI	CAYNNNNRTG	2 cut(s)	117, 152
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SsiI	CCGC	4 cut(s)	63, 182, 206, 267
StyD4I	CCNGG	2 cut(s)	159, 299
StyI	CCWWGG	2 cut(s)	209, 271
TaaI	ACNGT	2 cut(s)	367, 410
TaqI	TCGA	3 cut(s)	167, 330, 429
TauI	GCSGC	2 cut(s)	185, 208
TfiI	GAWTC	4 cut(s)	164, 284, 310, 507
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	2 cut(s)	347, 376
TseI	GCWGC	2 cut(s)	122, 397
TspDTI	ATGAA	3 cut(s)	120, 447, 513
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	2 cut(s)	347, 376
VneI	GTGCAC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.