Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004580

Physical Location & Seq

Genomic Coordinates Reverse (-)

15655113 .. 15658347

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0172200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGGAAGGGAGATTCTCTTCGTGAAGAAATTAACCCAAGCTATGGTGATAGAATTACTGTTCTAAGCATTGATGGGGGTGGAATTAGAGGCATTATTCCTGGAACCATTTTGAGTTTCCTTGAATCCAAATTACAAGAATTAGATGGAGAAGAAGCGCGAATTGCAGACTACTTTGATGTGATTGCAGGAACAAGCACAGGAGGGCTAATAGCAACCATGTTGACAGCACCTGATGAAAAAAAGAGACCTCTTTTTGAGGCAAGAGATATAGTCCCATTTTATCTGAAGCATTGCCCCAGAATATTTCCTCAATCCAGTCGGAGAATTATGAGAATGTGTGCCTTAATTGGACCAAAATATGATGGCAAGTACCTGAGAAAGATGCTTCGTCAGATACTTGGAGCTAGAAGACTGCATGAAACTGTTACACGAATTGTTATACCCACTTTTGACATCAAGCTGCTTCAACCCCATGCCTTCTCAACCTTTGAGGCAGAGATCGATGCTTCTGAGGATGCATTGTTATCAGATGTTTGCATCGGTACTTCGTCGGCTCCAACTTATCTTCCAGCTCATCACTTCAAAACTAGAGACTCAGGAGGAAATGAGAGGGAATTCCATCTTGTTGATGGTGGTGTGGCAGCAAACAATCCTGCATTGCTGGCAATGAAGCCAACAGGGACAGTGTTCCCAGGAAGTCCAGATGCTCTGGCTGCACCACAAAGCCTAGACTACAGCAAATACCTAGTGCTCTCTCTAGGCACTGGAACTTCAAAGACAGAGAAGAAGTACGATGCAAAAATGGCATCAAAGTGGGGGATCATGGGCTGGCTCTACAAAGATGGCCACTGCCCTTTAGTTGATGCTTTTACTTTTGCTAGTGGAGACATGGTTGACCTTCACATGTCATTGATTTTCAGGTCCATTAGTTGCGAGCATAACTACCTTCGAATCCAAGATGACACTTTGAGCGGGCATGTATCGTCGACGGACAAGGCGACGAAGAAGAACTTGAAGGATCTTGTGAAGACTGGTGAGGGTCTGCTGCAGAAACCTGTTTCCAGGATGAATCACGACACTGGGATTTTTGAGCCTGTGGGAAATGAAGGCACCAATGAGACCGCTCTCATTAGGTTTGCAAAAGCACTATCAGAAGAAAGAAGACTGCGGAAGGAAAGATTCCACCAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005092 GO:0005093 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010721 GO:0010769 GO:0010771 GO:0010975 GO:0010977 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030154 GO:0030234 GO:0030695 GO:0031344 GO:0031345 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0035556 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048046 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050770 GO:0050771 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051093 GO:0051128 GO:0051129 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051716 GO:0051960 GO:0051961 GO:0060284 GO:0060341 GO:0060589 GO:0065007 GO:0065009 GO:0070201 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0098772 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

398

Amino Acids

43.99

Weight (kDa)

7.69

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	22 - 223	9.9e-29	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09550
fragaria_vesca	FvH4_1g19700
malus_domestica	MD01G1038700.v1.1 MD15G1313100.v1.1
prunus_persica	Prupe.6G201200_v2.0.a1 Prupe.8G069400_v2.0.a1 Prupe.8G069400_v2.0.a1
pyrus_communis	pycom01g06660 pycom15g27650
rosa_chinensis	RchiOBHm_Chr2g0111261 RchiOBHm_Chr6g0271061
rosa_laevigata	RLG00000013748 RLG00000017880
rosa_multiflora	Rmu_co8304329.1_g000001 Rmu_sc0000239.1_g000071 Rmu_sc0000744.1_g000066 Rmu_sc0001476.1_g000004 Rmu_sc0001721.1_g000013 Rmu_sc0002882.1_g000016 Rmu_sc0004447.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132560 Rroxscaffold_7G00197320
rosa_rugosa	Rorug02G0172200 Rorug02G0172300 Rorug06G0058200
rosa_samantha	Rh2BG237100 Rh2DG232700 Rh6DG169400
rosa_wichuraiana	Rw0G009900 Rw2G017390 Rw6G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1112
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccBSI	CCGCTC	2 cut(s)	975, 1127
AccI	GTMKAC	1 cut(s)	989
AccII	CGCG	1 cut(s)	160
AciI	CCGC	3 cut(s)	975, 1125, 1171
AclWI	GGATC	2 cut(s)	830, 1029
AcoI	YGGCCR	1 cut(s)	847
AcsI	RAATTY	1 cut(s)	617
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	3 cut(s)	374, 547, 794
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	906
AgsI	TTSAA	5 cut(s)	125, 470, 586, 777, 1018
AjnI	CCWGG	3 cut(s)	100, 694, 1064
AluBI	AGCT	4 cut(s)	42, 407, 463, 575
AluI	AGCT	4 cut(s)	42, 407, 463, 575
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	4 cut(s)	241, 588, 882, 1115
AlwI	GGATC	2 cut(s)	830, 1029
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	847
ApeKI	GCWGC	4 cut(s)	463, 644, 716, 1048
ApoI	RAATTY	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	353, 924
AsuHPI	GGTGA	2 cut(s)	59, 1049
AsuII	TTCGAA	1 cut(s)	952
AvaII	GGWCC	2 cut(s)	353, 924
BalI	TGGCCA	1 cut(s)	849
BanI	GGYRCC	1 cut(s)	1112
BbsI	GAAGAC	3 cut(s)	418, 1037, 1171
Bbv12I	GWGCWC	1 cut(s)	756
BbvI	GCAGC	4 cut(s)	450, 656, 703, 1035
BccI	CCATC	6 cut(s)	68, 140, 359, 626, 630, 839
BciT130I	CCWGG	3 cut(s)	102, 696, 1066
BcoDI	GTCTC	4 cut(s)	241, 588, 882, 1115
BfaI	CTAG	7 cut(s)	408, 591, 731, 749, 761, 882, 1195
BfmI	CTRYAG	2 cut(s)	736, 1049
BisI	GCNGC	4 cut(s)	464, 645, 717, 1049
BlsI	GCNGC	4 cut(s)	465, 646, 718, 1050
Bme1390I	CCNGG	3 cut(s)	102, 696, 1066
Bme18I	GGWCC	2 cut(s)	353, 924
BmgT120I	GGNCC	2 cut(s)	353, 924
BmiI	GGNNCC	3 cut(s)	106, 558, 1114
BmrFI	CCNGG	3 cut(s)	102, 696, 1066
BmrI	ACTGGG	1 cut(s)	1092
BmsI	GCATC	8 cut(s)	375, 496, 508, 549, 697, 787, 818, 856
BmuI	ACTGGG	1 cut(s)	1092
BpiI	GAAGAC	3 cut(s)	418, 1037, 1171
Bpu14I	TTCGAA	1 cut(s)	952
Bsa29I	ATCGAT	1 cut(s)	504
BsaI	GGTCTC	2 cut(s)	241, 1115
BsaJI	CCNNGG	1 cut(s)	694
BsaXI	ACNNNNNCTCC	2 cut(s)	879, 909
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	4 cut(s)	318, 772, 1039, 1087
Bse3DI	GCAATG	3 cut(s)	292, 659, 675
BseBI	CCWGG	3 cut(s)	102, 696, 1066
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	2 cut(s)	523, 1074
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	3 cut(s)	292, 659, 675
BseMII	CTCAG	3 cut(s)	368, 504, 612
BseNI	ACTGG	4 cut(s)	318, 772, 1039, 1087
BseXI	GCAGC	4 cut(s)	450, 656, 703, 1035
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	849
BshNI	GGYRCC	1 cut(s)	1112
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	756
BslFI	GGGAC	2 cut(s)	260, 697
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	4 cut(s)	241, 588, 882, 1115
BsmFI	GGGAC	2 cut(s)	260, 697
BsnI	GGCC	1 cut(s)	849
Bso31I	GGTCTC	2 cut(s)	241, 1115
Bsp119I	TTCGAA	1 cut(s)	952
Bsp1286I	GDGCHC	1 cut(s)	756
Bsp143I	GATC	3 cut(s)	501, 822, 1021
BspACI	CCGC	3 cut(s)	975, 1125, 1171
BspANI	GGCC	1 cut(s)	849
BspCNI	CTCAG	3 cut(s)	369, 505, 611
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	106, 558, 1114
BspMAI	CTGCAG	1 cut(s)	1053
BspPI	GGATC	2 cut(s)	830, 1029
BspT104I	TTCGAA	1 cut(s)	952
BspT107I	GGYRCC	1 cut(s)	1112
BspTNI	GGTCTC	2 cut(s)	241, 1115
BsrBI	CCGCTC	2 cut(s)	975, 1127
BsrDI	GCAATG	3 cut(s)	292, 659, 675
BsrI	ACTGG	4 cut(s)	318, 772, 1039, 1087
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	3 cut(s)	501, 822, 1021
Bst2UI	CCWGG	3 cut(s)	102, 696, 1066
Bst4CI	ACNGT	3 cut(s)	61, 427, 688
Bst6I	CTCTTC	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	952
BstC8I	GCNNGC	4 cut(s)	666, 833, 938, 977
BstDEI	CTNAG	4 cut(s)	65, 377, 513, 598
BstF5I	GGATG	2 cut(s)	523, 1074
BstFNI	CGCG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	3 cut(s)	504, 825, 1024
BstMAI	GTCTC	4 cut(s)	241, 588, 882, 1115
BstMBI	GATC	3 cut(s)	501, 822, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 665, 716, 806
BstNI	CCWGG	3 cut(s)	102, 696, 1066
BstNSI	RCATGY	2 cut(s)	910, 983
BstSCI	CCNGG	3 cut(s)	100, 694, 1064
BstSFI	CTRYAG	2 cut(s)	736, 1049
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	4 cut(s)	450, 656, 703, 1035
BstV2I	GAAGAC	3 cut(s)	418, 1037, 1171
BstX2I	RGATCY	1 cut(s)	1021
BstYI	RGATCY	1 cut(s)	1021
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	849
BsuTUI	ATCGAT	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	523, 1074
BtsI	GCAGTG	1 cut(s)	850
BtsIMutI	CAGTG	4 cut(s)	693, 765, 850, 1080
Cac8I	GCNNGC	4 cut(s)	666, 833, 938, 977
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	353, 924
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	3 cut(s)	373, 546, 793
CviAII	CATG	7 cut(s)	220, 419, 476, 826, 892, 907, 980
CviQI	GTAC	3 cut(s)	373, 546, 793
DdeI	CTNAG	4 cut(s)	65, 377, 513, 598
DpnI	GATC	3 cut(s)	503, 824, 1023
DpnII	GATC	3 cut(s)	501, 822, 1021
EaeI	YGGCCR	1 cut(s)	847
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco31I	GGTCTC	2 cut(s)	241, 1115
Eco47I	GGWCC	2 cut(s)	353, 924
Eco57I	CTGAAG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	3 cut(s)	100, 694, 1064
EcoT22I	ATGCAT	1 cut(s)	523
FaeI	CATG	7 cut(s)	223, 422, 479, 829, 895, 910, 983
FalI	AAGNNNNNCTT	2 cut(s)	998, 1030
FaqI	GGGAC	2 cut(s)	260, 697
FatI	CATG	7 cut(s)	219, 418, 475, 825, 891, 906, 979
FauI	CCCGC	1 cut(s)	968
FblI	GTMKAC	1 cut(s)	989
Fnu4HI	GCNGC	4 cut(s)	464, 645, 717, 1049
FokI	GGATG	2 cut(s)	530, 1081
Fsp4HI	GCNGC	4 cut(s)	464, 645, 717, 1049
FspBI	CTAG	7 cut(s)	408, 591, 731, 749, 761, 882, 1195
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	4 cut(s)	464, 645, 717, 1049
HaeIII	GGCC	1 cut(s)	849
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	7 cut(s)	223, 422, 479, 829, 895, 910, 983
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	3 cut(s)	225, 898, 990
HindII	GTYRAC	3 cut(s)	225, 898, 990
HinfI	GANTC	6 cut(s)	14, 125, 596, 954, 1072, 1182
HphI	GGTGA	2 cut(s)	59, 1049
Hpy166II	GTNNAC	3 cut(s)	225, 898, 990
Hpy188I	TCNGA	6 cut(s)	288, 324, 396, 514, 532, 1156
Hpy188III	TCNNGA	4 cut(s)	23, 600, 704, 1076
Hpy8I	GTNNAC	3 cut(s)	225, 898, 990
Hpy99I	CGWCG	4 cut(s)	556, 991, 994, 1006
HpyAV	CCTTC	6 cut(s)	490, 911, 959, 1012, 1103, 1168
HpyCH4III	ACNGT	3 cut(s)	61, 427, 688
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 665, 716, 806
HpyF3I	CTNAG	4 cut(s)	65, 377, 513, 598
Hsp92II	CATG	7 cut(s)	223, 422, 479, 829, 895, 910, 983
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	3 cut(s)	501, 822, 1021
LmnI	GCTCC	2 cut(s)	404, 562
Lsp1109I	GCAGC	4 cut(s)	450, 656, 703, 1035
LweI	GCATC	8 cut(s)	375, 496, 508, 549, 697, 787, 818, 856
MaeI	CTAG	7 cut(s)	408, 591, 731, 749, 761, 882, 1195
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	3 cut(s)	503, 824, 1023
MbiI	CCGCTC	2 cut(s)	975, 1127
MboI	GATC	3 cut(s)	501, 822, 1021
MflI	RGATCY	1 cut(s)	1021
MhlI	GDGCHC	1 cut(s)	756
MlsI	TGGCCA	1 cut(s)	849
MluNI	TGGCCA	1 cut(s)	849
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	2 cut(s)	302, 584
Mox20I	TGGCCA	1 cut(s)	849
Mph1103I	ATGCAT	1 cut(s)	523
MscI	TGGCCA	1 cut(s)	849
MseI	TTAA	2 cut(s)	33, 347
MslI	CAYNNNNRTG	1 cut(s)	814
Msp20I	TGGCCA	1 cut(s)	849
MspR9I	CCNGG	3 cut(s)	102, 696, 1066
MvaI	CCWGG	3 cut(s)	102, 696, 1066
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	4 cut(s)	164, 665, 716, 806
NdeII	GATC	3 cut(s)	501, 822, 1021
NlaIII	CATG	7 cut(s)	223, 422, 479, 829, 895, 910, 983
NlaIV	GGNNCC	3 cut(s)	106, 558, 1114
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	2 cut(s)	910, 983
NspV	TTCGAA	1 cut(s)	952
PciI	ACATGT	1 cut(s)	906
PcsI	WCGNNNNNNNCGW	1 cut(s)	998
PfeI	GAWTC	5 cut(s)	14, 125, 954, 1072, 1182
PflMI	CCANNNNNTGG	1 cut(s)	44
PfoI	TCCNGGA	2 cut(s)	100, 1064
PkrI	GCNGC	4 cut(s)	465, 646, 718, 1050
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PscI	ACATGT	1 cut(s)	906
Psp6I	CCWGG	3 cut(s)	100, 694, 1064
PspGI	CCWGG	3 cut(s)	100, 694, 1064
PspN4I	GGNNCC	3 cut(s)	106, 558, 1114
PspPI	GGNCC	2 cut(s)	353, 924
PstI	CTGCAG	1 cut(s)	1053
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	1021
RsaI	GTAC	3 cut(s)	374, 547, 794
RsaNI	GTAC	3 cut(s)	373, 546, 793
RseI	CAYNNNNRTG	1 cut(s)	814
SalI	GTCGAC	1 cut(s)	988
SaqAI	TTAA	2 cut(s)	33, 347
SatI	GCNGC	4 cut(s)	464, 645, 717, 1049
Sau3AI	GATC	3 cut(s)	501, 822, 1021
Sau96I	GGNCC	2 cut(s)	353, 924
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	3 cut(s)	102, 696, 1066
SduI	GDGCHC	1 cut(s)	756
SfaNI	GCATC	8 cut(s)	375, 496, 508, 549, 697, 787, 818, 856
SfcI	CTRYAG	2 cut(s)	736, 1049
SfuI	TTCGAA	1 cut(s)	952
SgrDI	CGTCGACG	1 cut(s)	988
SinI	GGWCC	2 cut(s)	353, 924
SmiMI	CAYNNNNRTG	1 cut(s)	814
SsiI	CCGC	3 cut(s)	975, 1125, 1171
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	7 cut(s)	408, 591, 731, 749, 761, 882, 1195
StyD4I	CCNGG	3 cut(s)	100, 694, 1064
TaaI	ACNGT	3 cut(s)	61, 427, 688
TaqI	TCGA	3 cut(s)	504, 952, 989
TfiI	GAWTC	5 cut(s)	14, 125, 954, 1072, 1182
Tru1I	TTAA	2 cut(s)	33, 347
Tru9I	TTAA	2 cut(s)	33, 347
TscAI	CASTG	4 cut(s)	693, 772, 857, 1087
TseI	GCWGC	4 cut(s)	463, 644, 716, 1048
TspDTI	ATGAA	5 cut(s)	252, 435, 686, 1085, 1122
TspGWI	ACGGA	1 cut(s)	1007
TspRI	CASTG	4 cut(s)	693, 772, 857, 1087
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	353, 924
XapI	RAATTY	1 cut(s)	617
XceI	RCATGY	2 cut(s)	910, 983
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	989
XspI	CTAG	7 cut(s)	408, 591, 731, 749, 761, 882, 1195
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.