Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004580

Physical Location & Seq

Genomic Coordinates Forward (+)

10196009 .. 10201246

Gene Structure 5238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G069400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGATGAAGAGTACGACGTGATAGTTCTCGGGACGGGTCTCAAGGAATGCATTCTCAGTGGTCTTCTCTCCGTCGATGGGCTCAAAGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGCATCTACCTCTCTAAATCTTACGCAGCTTTGGAAGCGGTTTAGGGGAGATGACAAGCCTCCGGAAAGTTTGGGCTCAAGCAGAGAGTACAATGTTGACATGATACCAAAGTTCATGATGGCCAATGGTGGTTTGGTCCGTGTGCTGATCCACACAGATGTCACCAAGTATCTGAACTTTAAGGCTGTTGATGGTAGCTTTGTGTACAACAAAAAGAAGATCTATAAAGTTCCAGCAACTGATGTAGAAGCACTAAAATCGCCATTGATGGGACTATTTGAGAAGCGACGTGCTCGAAAGTTCTTCATTTATGTTCAAGACTTTGAAGAGAATGATCCCAAATCTCATGAAGGGCTGGACTTGAACAAAGTTACTGCAAGGGAGGTTATCACGAAATATGGGCTAGAAGATGATACAATCGACTTTATTGGTCATGCCTTGGCACTTCATATTGATGATTCTTACTTGGATGAGCCAGCAATGGAGTTTGTGAAGAAAATGAAGCTCTATGCAGAGTCTTTGGCACGTTTTGAAGGAGGATCGCCTTATATCTATCCGCTGTATGGACTTGGAGAGTTGCCTCAGGCATTTGCACGTTTAAGTGCTGTTTATGGTGGAACTTATATGCTCAACAAGCCTGAGTGTCAGGTAAAATTTGATGATAATGGGAACGCTATTGGTGTGACCTCAGAAGGAGAAACAGCTAAATGCAAGAAAGTTGTTTGTGATCCATCATATTTGCCCGATAAGGTACGGAAAGTTGGAAAAGTTGCTCGTGCTATATGTATAATGAGCCATCCTATTCCAGACACCAATGATTCACATTCAGTCCAGGTTATTCTGCCGCAGAAGCAACTTGGTCGTAAATCAGATATGTACCTATTCTGCTGCTCCTATGCTCACAATGTAGCTCCAAAAGGAAAATTCATCGCTTTTGTTTCGACAGAAGCAGAAACTGATGATCCTCAAGTTGAATTGAAGTCTGGAATTGATCTACTTGGTCCATTAGATGAGATCTTCTACGATACTTATGACAGATATGTACCCACTAACGACCATCAAGTTGACAGTTGCTACATATCTTCTAGTTACGATGCAACTACGCACTTTGAGTCCACAGTACAAGACGTACTAGCGATGTACACAAAGATTACTGGAAAGGCTCTTGATCTTTCCGTCGATCTAAGTGCTGCAAGTGCTACTGCTGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

446

Amino Acids

49.7

Weight (kDa)

5.17

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09550
fragaria_vesca	FvH4_1g19700
malus_domestica	MD01G1038700.v1.1 MD15G1313100.v1.1
prunus_persica	Prupe.6G201200_v2.0.a1 Prupe.8G069400_v2.0.a1 Prupe.8G069400_v2.0.a1
pyrus_communis	pycom01g06660 pycom15g27650
rosa_chinensis	RchiOBHm_Chr2g0111261 RchiOBHm_Chr6g0271061
rosa_laevigata	RLG00000013748 RLG00000017880
rosa_multiflora	Rmu_co8304329.1_g000001 Rmu_sc0000239.1_g000071 Rmu_sc0000744.1_g000066 Rmu_sc0001476.1_g000004 Rmu_sc0001721.1_g000013 Rmu_sc0002882.1_g000016 Rmu_sc0004447.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132560 Rroxscaffold_7G00197320
rosa_rugosa	Rorug02G0172200 Rorug02G0172300 Rorug06G0058200
rosa_samantha	Rh2BG237100 Rh2DG232700 Rh6DG169400
rosa_wichuraiana	Rw0G009900 Rw2G017390 Rw6G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	3 cut(s)	160, 680, 968
AclWI	GGATC	5 cut(s)	265, 452, 670, 845, 1079
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	776, 1046
AfaI	GTAC	9 cut(s)	14, 212, 329, 876, 1001, 1167, 1245, 1254, 1265
AfiI	CCNNNNNNNGG	3 cut(s)	78, 392, 686
AgsI	TTSAA	6 cut(s)	440, 449, 487, 656, 1097, 1102
AjiI	CACGTC	2 cut(s)	19, 413
AjnI	CCWGG	1 cut(s)	954
AluBI	AGCT	5 cut(s)	151, 321, 628, 827, 1034
AluI	AGCT	5 cut(s)	151, 321, 628, 827, 1034
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	5 cut(s)	265, 452, 670, 845, 1079
AlwNI	CAGNNNCTG	2 cut(s)	362, 1079
Ama87I	CYCGRG	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	3 cut(s)	148, 1011, 1313
ApoI	RAATTY	2 cut(s)	776, 1046
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	259, 1124
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	259, 1124
AxyI	CCTNAGG	1 cut(s)	705
BaeI	ACNNNNGTAYC	2 cut(s)	218, 251
BalI	TGGCCA	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	84, 200
BauI	CACGAG	1 cut(s)	897
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	3 cut(s)	160, 998, 1300
BccI	CCATC	7 cut(s)	71, 235, 308, 385, 862, 927, 1188
BcgI	CGANNNNNNTGC	6 cut(s)	363, 397, 965, 999, 1292, 1326
BciT130I	CCWGG	1 cut(s)	956
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	3 cut(s)	527, 1209, 1256
BglII	AGATCT	2 cut(s)	342, 1137
BisI	GCNGC	4 cut(s)	149, 968, 1012, 1314
BlsI	GCNGC	4 cut(s)	150, 969, 1013, 1315
Bme1390I	CCNGG	1 cut(s)	956
Bme18I	GGWCC	2 cut(s)	259, 1124
BmeT110I	CYCGRG	1 cut(s)	29
BmgBI	CACGTC	2 cut(s)	19, 413
BmgT120I	GGNCC	2 cut(s)	259, 1124
BmrFI	CCNGG	1 cut(s)	956
BmsI	GCATC	2 cut(s)	134, 1207
BpiI	GAAGAC	1 cut(s)	56
BpuEI	CTTGAG	3 cut(s)	26, 184, 1074
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 392, 686
Bse1I	ACTGG	1 cut(s)	1282
Bse21I	CCTNAGG	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	609
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	956
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	3 cut(s)	10, 598, 919
BseLI	CCNNNNNNNGG	3 cut(s)	78, 392, 686
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	4 cut(s)	70, 719, 753, 825
BseNI	ACTGG	1 cut(s)	1282
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	160, 998, 1300
BshFI	GGCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	2 cut(s)	46, 408
BslI	CCNNNNNNNGG	3 cut(s)	78, 392, 686
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	2 cut(s)	46, 408
BsmI	GAATGC	2 cut(s)	51, 53
BsnI	GGCC	1 cut(s)	245
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	84, 200, 418
Bsp13I	TCCGGA	1 cut(s)	184
Bsp1407I	TGTACA	2 cut(s)	327, 1263
BspACI	CCGC	3 cut(s)	160, 680, 968
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	4 cut(s)	69, 718, 754, 824
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	2 cut(s)	237, 469
BspPI	GGATC	5 cut(s)	265, 452, 670, 845, 1079
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	609
BsrGI	TGTACA	2 cut(s)	327, 1263
BsrI	ACTGG	1 cut(s)	1282
BssECI	CCNNGG	1 cut(s)	561
BssSI	CACGAG	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	956
Bst4CI	ACNGT	2 cut(s)	1193, 1243
Bst6I	CTCTTC	2 cut(s)	3, 444
BstAUI	TGTACA	2 cut(s)	327, 1263
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	5 cut(s)	56, 705, 762, 811, 1307
BstF5I	GGATG	3 cut(s)	10, 598, 919
BstMAI	GTCTC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 757, 973, 1319
BstNI	CCWGG	1 cut(s)	956
BstSCI	CCNGG	1 cut(s)	954
BstV1I	GCAGC	3 cut(s)	160, 998, 1300
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	342, 1137
BstYI	RGATCY	2 cut(s)	342, 1137
Bsu36I	CCTNAGG	1 cut(s)	705
BsuRI	GGCC	1 cut(s)	245
BtgZI	GCGATG	2 cut(s)	1036, 1274
BtrI	CACGTC	2 cut(s)	19, 413
BtsCI	GGATG	3 cut(s)	10, 598, 919
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	600
CaiI	CAGNNNCTG	2 cut(s)	362, 1079
CciI	TCATGA	2 cut(s)	237, 469
Cfr13I	GGNCC	2 cut(s)	259, 1124
Csp6I	GTAC	9 cut(s)	13, 211, 328, 875, 1000, 1166, 1244, 1253, 1264
CviAII	CATG	4 cut(s)	223, 238, 470, 557
CviQI	GTAC	9 cut(s)	13, 211, 328, 875, 1000, 1166, 1244, 1253, 1264
DdeI	CTNAG	5 cut(s)	56, 705, 762, 811, 1307
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	3, 444
EarI	CTCTTC	2 cut(s)	3, 444
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	2 cut(s)	84, 200
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	259, 1124
Eco81I	CCTNAGG	1 cut(s)	705
Eco88I	CYCGRG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	954
EcoT14I	CCWWGG	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	53
EcoT38I	GRGCYC	2 cut(s)	84, 200
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	4 cut(s)	226, 241, 473, 560
FaqI	GGGAC	2 cut(s)	46, 408
FatI	CATG	4 cut(s)	222, 237, 469, 556
FauNDI	CATATG	1 cut(s)	96
Fnu4HI	GCNGC	4 cut(s)	149, 968, 1012, 1314
FokI	GGATG	3 cut(s)	17, 605, 906
FriOI	GRGCYC	2 cut(s)	84, 200
Fsp4HI	GCNGC	4 cut(s)	149, 968, 1012, 1314
FspBI	CTAG	3 cut(s)	527, 1209, 1256
GluI	GCNGC	4 cut(s)	149, 968, 1012, 1314
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	4 cut(s)	226, 241, 473, 560
HincII	GTYRAC	2 cut(s)	220, 1189
HindII	GTYRAC	2 cut(s)	220, 1189
HinfI	GANTC	4 cut(s)	581, 638, 941, 1235
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	5 cut(s)	220, 328, 1189, 1239, 1266
Hpy188I	TCNGA	3 cut(s)	297, 814, 994
Hpy188III	TCNNGA	9 cut(s)	31, 185, 238, 440, 470, 514, 929, 1107, 1289
Hpy8I	GTNNAC	5 cut(s)	220, 328, 1189, 1239, 1266
Hpy99I	CGWCG	4 cut(s)	20, 77, 414, 1304
HpyAV	CCTTC	3 cut(s)	467, 650, 809
HpyCH4III	ACNGT	2 cut(s)	1193, 1243
HpyCH4IV	ACGT	5 cut(s)	18, 412, 649, 718, 1251
HpyCH4V	TGCA	8 cut(s)	51, 94, 500, 635, 716, 834, 1220, 1316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 757, 973, 1319
HpyF3I	CTNAG	5 cut(s)	56, 705, 762, 811, 1307
HpySE526I	ACGT	5 cut(s)	18, 412, 649, 718, 1251
Hsp92II	CATG	4 cut(s)	226, 241, 473, 560
Kpn2I	TCCGGA	1 cut(s)	184
LmnI	GCTCC	3 cut(s)	122, 1019, 1039
Lsp1109I	GCAGC	3 cut(s)	160, 998, 1300
LweI	GCATC	2 cut(s)	134, 1207
MaeI	CTAG	3 cut(s)	527, 1209, 1256
MaeII	ACGT	5 cut(s)	18, 412, 649, 718, 1251
MaeIII	GTNAC	4 cut(s)	283, 493, 805, 1211
MboII	GAAGA	9 cut(s)	20, 56, 352, 418, 461, 542, 628, 1132, 1197
MflI	RGATCY	2 cut(s)	342, 1137
MhlI	GDGCHC	3 cut(s)	84, 200, 418
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	4 cut(s)	776, 1046, 1097, 1110
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	647, 1244
MmeI	TCCRAC	1 cut(s)	865
MnlI	CCTC	8 cut(s)	113, 142, 192, 499, 653, 714, 820, 1098
Mox20I	TGGCCA	1 cut(s)	245
Mph1103I	ATGCAT	1 cut(s)	53
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	2 cut(s)	303, 722
MslI	CAYNNNNRTG	2 cut(s)	279, 576
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	956
Mva1269I	GAATGC	2 cut(s)	51, 53
MvaI	CCWGG	1 cut(s)	956
MwoI	GCNNNNNNNGC	4 cut(s)	157, 757, 973, 1319
NdeI	CATATG	1 cut(s)	96
NlaIII	CATG	4 cut(s)	226, 241, 473, 560
NmuCI	GTSAC	2 cut(s)	283, 805
NsiI	ATGCAT	1 cut(s)	53
PagI	TCATGA	2 cut(s)	237, 469
PctI	GAATGC	2 cut(s)	51, 53
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	581, 941
PkrI	GCNGC	4 cut(s)	150, 969, 1013, 1315
PleI	GAGTC	2 cut(s)	646, 1243
PpsI	GAGTC	2 cut(s)	646, 1243
Psp6I	CCWGG	1 cut(s)	954
PspGI	CCWGG	1 cut(s)	954
PspPI	GGNCC	2 cut(s)	259, 1124
PstNI	CAGNNNCTG	2 cut(s)	362, 1079
PsuI	RGATCY	2 cut(s)	342, 1137
RsaI	GTAC	9 cut(s)	14, 212, 329, 876, 1001, 1167, 1245, 1254, 1265
RsaNI	GTAC	9 cut(s)	13, 211, 328, 875, 1000, 1166, 1244, 1253, 1264
RseI	CAYNNNNRTG	2 cut(s)	279, 576
SaqAI	TTAA	2 cut(s)	303, 722
SatI	GCNGC	4 cut(s)	149, 968, 1012, 1314
Sau96I	GGNCC	2 cut(s)	259, 1124
SchI	GAGTC	2 cut(s)	647, 1244
ScrFI	CCNGG	1 cut(s)	956
SduI	GDGCHC	3 cut(s)	84, 200, 418
SfaNI	GCATC	2 cut(s)	134, 1207
SinI	GGWCC	2 cut(s)	259, 1124
SmiMI	CAYNNNNRTG	2 cut(s)	279, 576
SmlI	CTYRAG	3 cut(s)	41, 199, 1089
SmoI	CTYRAG	3 cut(s)	41, 199, 1089
Sse9I	AATT	4 cut(s)	776, 1046, 1097, 1110
SsiI	CCGC	3 cut(s)	160, 680, 968
SspMI	CTAG	3 cut(s)	527, 1209, 1256
StyD4I	CCNGG	1 cut(s)	954
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	1193, 1243
TaiI	ACGT	5 cut(s)	21, 415, 652, 721, 1254
TaqI	TCGA	5 cut(s)	75, 418, 543, 1064, 1302
TasI	AATT	4 cut(s)	776, 1046, 1097, 1110
TatI	WGTACW	4 cut(s)	210, 327, 1243, 1263
TauI	GCSGC	1 cut(s)	970
TfiI	GAWTC	2 cut(s)	581, 941
Tru1I	TTAA	2 cut(s)	303, 722
Tru9I	TTAA	2 cut(s)	303, 722
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	2 cut(s)	283, 805
TseI	GCWGC	3 cut(s)	148, 1011, 1313
Tsp45I	GTSAC	2 cut(s)	283, 805
TspDTI	ATGAA	7 cut(s)	21, 226, 418, 486, 560, 638, 1039
TspGWI	ACGGA	4 cut(s)	61, 251, 892, 1288
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	259, 1124
XapI	RAATTY	2 cut(s)	776, 1046
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	3 cut(s)	527, 1209, 1256
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.