FvH4_1g19700

Guanosine nucleotide diphosphate dissociation inhibitor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
11914071 .. 11920041
5971 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19700.t1

Sequence Viewer

Length: 1335 bp
ATGGATGAAGAATACGACGTCATAGTGCTCGGAACTGGCCTCAAAGAATGCATTCTCAGCGGTCTTCTCTCCGTTGATGGTCTCAAGGTACTGCATATGGATAGGAATGACTATTATGGAGGAGAGTCTACTTCACTTAATCTCAATCAGCTTTGGAAGAGATTCAGGGGTGATGATAAGCCTCCAGAATCTTTGGGCTCAAGTAGAGACTACAATGTTGATATGATCCCCAAGTTCATGATGGCAAATGGTGCTTTGGTTCGCGTCCTCATTCACACCGATGTTACTAAATATCTAAATTTCAAGGCTGTAGATGGTAGTTTTGTGTATAACAAAGGGAAGGTCCACAAAGTACCAGCTAATGATGTGGAAGCTCTTAAATCTCCACTCATGGGATTATTTGAGAAGCGCCGTGCTCGCAAGTTTTTCCTTTATGTGCAAGACTTTGAAGAGAATGATCCAAAAACTCATGAAGGCATGGATCTCACCAAAGTTACAGCCAAAGAACTTATTTCGAAGTACGGGCTAGATGACAACACAGTTGATTTCATTGGGCATGCACTAGCACTCCACCGGGATGATACTTACTTGGAAGAGCCTGCTCTGGCTTTTGTGAAGAGGATGAAGTTATATGCAGAGTCCTTAGCACGCTTTCAAGGAGGTTCTCCTTATATCTACCCATTATATGGTCTAGGAGAGCTACCCCAGGCATTTGCAAGGCTGAGTGCTGTTTATGGTGGCACATACATGCTCTCCAAGCCAGAGTGCAAGGTAGAGTTTGATGGAAGTGGAAAGGTAATTGGTGTGACTTCAGAAGGTGAAACTGCAAAGTGCAAAAAAGTTGTATGTGATCCTTCATATTTGCCTGATAAGGTGACGAAGGTGGGGAAAGTTGCCCGTGCTATATGTATAATGAGCCATCCCATCCCAAACACCAATGATTCTCATTCAGTGCAGGTTATTCTGCCTCAGAAGCAACTTGGACGCAAATCCGATATGTATCTGTTTTGCTGCTCCTATTCTCACAATGTAGCTCCAAAAGGGAAATACATTGCTTTTGTGTTAACAGAAGCGGAGACCGATAATCCTCAGGTTGAGTTGAAGCCTGGCACGGATCTCCTGGGACCTGTAGATGATATCTTCTTTGATACTTACGATAGATATGAACCTACTAACCAGTCTGAAGCTGACCACTGTTTCATCTCTGGGAGTTATGACGCTACGACGCACTTTGAGACTACTGTACAAGATGTGATTGCCATGTATGGCAACATAACTGGAAAGGTTCTTGACTTGACTGTGGATCTGAGTGCTGCCAGCGCTGCTGAAGAATGA

Protein Analysis

445

Amino Acids

49.41

Weight (kDa)

5.34

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 1 - 433 1.9e-228 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 946
AccB7I CCANNNNNTGG 1 cut(s) 686
AccI GTMKAC 1 cut(s) 128
AccII CGCG 1 cut(s) 264
AciI CCGC 2 cut(s) 60, 1073
AclWI GGATC 6 cut(s) 220, 452, 489, 845, 1122, 1311
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 2 cut(s) 795, 1203
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 4 cut(s) 90, 354, 521, 1245
AfeI AGCGCT 1 cut(s) 1321
AfiI CCNNNNNNNGG 2 cut(s) 392, 686
AgsI TTSAA 4 cut(s) 304, 449, 656, 1102
AjnI CCWGG 3 cut(s) 705, 1105, 1119
AluBI AGCT 6 cut(s) 151, 359, 374, 700, 1034, 1187
AluI AGCT 6 cut(s) 151, 359, 374, 700, 1034, 1187
Alw21I GWGCWC 2 cut(s) 30, 418
Alw26I GTCTC 4 cut(s) 86, 201, 1070, 1229
AlwI GGATC 6 cut(s) 220, 452, 489, 845, 1122, 1311
Aor51HI AGCGCT 1 cut(s) 1321
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 3 cut(s) 1011, 1313, 1322
ApoI RAATTY 1 cut(s) 298
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
Asp700I GAANNNNTTC 2 cut(s) 51, 161
AspLEI GCGC 2 cut(s) 411, 1322
AspS9I GGNCC 2 cut(s) 343, 1124
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 4 cut(s) 182, 478, 830, 886
AsuII TTCGAA 1 cut(s) 515
AvaII GGWCC 2 cut(s) 343, 1124
AxyI CCTNAGG 1 cut(s) 1089
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 2 cut(s) 30, 418
BbvI GCAGC 3 cut(s) 998, 1300, 1309
BccI CCATC 6 cut(s) 71, 235, 308, 776, 927, 932
BceAI ACGGC 1 cut(s) 396
BciT130I CCWGG 3 cut(s) 707, 1107, 1121
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 4 cut(s) 86, 201, 1070, 1229
BfaI CTAG 3 cut(s) 527, 563, 692
BfmI CTRYAG 2 cut(s) 309, 1128
BfoI RGCGCY 2 cut(s) 412, 1323
BfuAI ACCTGC 1 cut(s) 946
BisI GCNGC 3 cut(s) 1012, 1314, 1323
BlsI GCNGC 3 cut(s) 1013, 1315, 1324
Bme1390I CCNGG 4 cut(s) 575, 707, 1107, 1121
Bme18I GGWCC 2 cut(s) 343, 1124
BmgT120I GGNCC 2 cut(s) 343, 1124
BmiI GGNNCC 1 cut(s) 1125
BmrFI CCNGG 4 cut(s) 575, 707, 1107, 1121
BpiI GAAGAC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 643
Bpu14I TTCGAA 1 cut(s) 515
BpuEI CTTGAG 2 cut(s) 68, 184
BpuMI CCSGG 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 999
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 86, 1070
BsaJI CCNNGG 2 cut(s) 705, 1120
BsaXI ACNNNNNCTCC 4 cut(s) 552, 582, 737, 767
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 686
Bse1I ACTGG 3 cut(s) 40, 1177, 1282
Bse21I CCTNAGG 1 cut(s) 1089
Bse3DI GCAATG 1 cut(s) 1050
Bse8I GATNNNNATC 1 cut(s) 999
BseBI CCWGG 3 cut(s) 707, 1107, 1121
BseDI CCNNGG 2 cut(s) 705, 1120
BseGI GGATG 5 cut(s) 10, 583, 627, 919, 924
BseJI GATNNNNATC 1 cut(s) 999
BseLI CCNNNNNNNGG 2 cut(s) 392, 686
BseMI GCAATG 1 cut(s) 1050
BseMII CTCAG 5 cut(s) 70, 713, 983, 1103, 1298
BseNI ACTGG 3 cut(s) 40, 1177, 1282
BseRI GAGGAG 1 cut(s) 135
BseXI GCAGC 3 cut(s) 998, 1300, 1309
BsgI GTGCAG 1 cut(s) 974
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 39
BsiHKAI GWGCWC 2 cut(s) 30, 418
BsiSI CCGG 1 cut(s) 574
BslFI GGGAC 1 cut(s) 1137
BslI CCNNNNNNNGG 2 cut(s) 392, 686
BsmAI GTCTC 4 cut(s) 86, 201, 1070, 1229
BsmFI GGGAC 1 cut(s) 1137
BsmI GAATGC 2 cut(s) 51, 53
BsnI GGCC 1 cut(s) 39
Bso31I GGTCTC 2 cut(s) 86, 1070
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 3 cut(s) 30, 200, 418
Bsp1407I TGTACA 1 cut(s) 1243
Bsp143I GATC 6 cut(s) 225, 457, 481, 850, 1114, 1303
BspACI CCGC 2 cut(s) 60, 1073
BspANI GGCC 1 cut(s) 39
BspCNI CTCAG 5 cut(s) 69, 714, 982, 1102, 1299
BspFNI CGCG 1 cut(s) 264
BspHI TCATGA 2 cut(s) 237, 469
BspLI GGNNCC 1 cut(s) 1125
BspMI ACCTGC 1 cut(s) 946
BspPI GGATC 6 cut(s) 220, 452, 489, 845, 1122, 1311
BspQI GCTCTTC 1 cut(s) 588
BspT104I TTCGAA 1 cut(s) 515
BspTNI GGTCTC 2 cut(s) 86, 1070
BsrDI GCAATG 1 cut(s) 1050
BsrGI TGTACA 1 cut(s) 1243
BsrI ACTGG 3 cut(s) 40, 1177, 1282
BssECI CCNNGG 2 cut(s) 705, 1120
BssMI GATC 6 cut(s) 225, 457, 481, 850, 1114, 1303
BssNI GRCGYC 1 cut(s) 18
Bst2UI CCWGG 3 cut(s) 707, 1107, 1121
Bst4CI ACNGT 4 cut(s) 541, 1196, 1243, 1300
Bst6I CTCTTC 4 cut(s) 152, 444, 588, 611
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 251
BstAUI TGTACA 1 cut(s) 1243
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 5 cut(s) 418, 558, 600, 649, 1318
BstDEI CTNAG 6 cut(s) 56, 643, 722, 969, 1089, 1307
BstF5I GGATG 5 cut(s) 10, 583, 627, 919, 924
BstFNI CGCG 1 cut(s) 264
BstH2I RGCGCY 2 cut(s) 412, 1323
BstHHI GCGC 2 cut(s) 411, 1322
BstKTI GATC 6 cut(s) 228, 460, 484, 853, 1117, 1306
BstMAI GTCTC 4 cut(s) 86, 201, 1070, 1229
BstMBI GATC 6 cut(s) 225, 457, 481, 850, 1114, 1303
BstMWI GCNNNNNNNGC 7 cut(s) 57, 251, 417, 757, 973, 1319, 1322
BstNI CCWGG 3 cut(s) 707, 1107, 1121
BstNSI RCATGY 2 cut(s) 560, 751
BstSCI CCNGG 4 cut(s) 573, 705, 1105, 1119
BstSFI CTRYAG 2 cut(s) 309, 1128
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 3 cut(s) 998, 1300, 1309
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 3 cut(s) 481, 1114, 1303
BstYI RGATCY 3 cut(s) 481, 1114, 1303
Bsu36I CCTNAGG 1 cut(s) 1089
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 5 cut(s) 10, 583, 627, 919, 924
BtsIMutI CAGTG 2 cut(s) 957, 1192
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 5 cut(s) 418, 558, 600, 649, 1318
CciI TCATGA 2 cut(s) 237, 469
CfoI GCGC 2 cut(s) 411, 1322
Cfr13I GGNCC 2 cut(s) 343, 1124
CseI GACGC 4 cut(s) 253, 993, 1226, 1234
Csp6I GTAC 4 cut(s) 89, 353, 520, 1244
CviAII CATG 7 cut(s) 238, 391, 470, 478, 557, 748, 1261
CviQI GTAC 4 cut(s) 89, 353, 520, 1244
DdeI CTNAG 6 cut(s) 56, 643, 722, 969, 1089, 1307
DpnI GATC 6 cut(s) 227, 459, 483, 852, 1116, 1305
DpnII GATC 6 cut(s) 225, 457, 481, 850, 1114, 1303
Eam1104I CTCTTC 4 cut(s) 152, 444, 588, 611
EarI CTCTTC 4 cut(s) 152, 444, 588, 611
Eco24I GRGCYC 1 cut(s) 200
Eco31I GGTCTC 2 cut(s) 86, 1070
Eco32I GATATC 1 cut(s) 1138
Eco47I GGWCC 2 cut(s) 343, 1124
Eco47III AGCGCT 1 cut(s) 1321
Eco57I CTGAAG 2 cut(s) 795, 1203
Eco81I CCTNAGG 1 cut(s) 1089
EcoO109I RGGNCCY 1 cut(s) 1124
EcoRII CCWGG 3 cut(s) 705, 1105, 1119
EcoRV GATATC 1 cut(s) 1138
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 7 cut(s) 241, 394, 473, 481, 560, 751, 1264
FaqI GGGAC 1 cut(s) 1137
FatI CATG 7 cut(s) 237, 390, 469, 477, 556, 747, 1260
FauNDI CATATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 3 cut(s) 1012, 1314, 1323
FokI GGATG 5 cut(s) 17, 590, 634, 906, 911
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 3 cut(s) 1012, 1314, 1323
FspBI CTAG 3 cut(s) 527, 563, 692
GlaI GCGC 2 cut(s) 410, 1321
GluI GCNGC 3 cut(s) 1012, 1314, 1323
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 2 cut(s) 412, 1323
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 574
HgaI GACGC 4 cut(s) 253, 993, 1226, 1234
HhaI GCGC 2 cut(s) 411, 1322
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 7 cut(s) 241, 394, 473, 481, 560, 751, 1264
Hin6I GCGC 2 cut(s) 409, 1320
HinP1I GCGC 2 cut(s) 409, 1320
HincII GTYRAC 1 cut(s) 1065
HindII GTYRAC 1 cut(s) 1065
HinfI GANTC 5 cut(s) 125, 162, 188, 638, 941
HpaI GTTAAC 1 cut(s) 1065
HpaII CCGG 1 cut(s) 574
HphI GGTGA 4 cut(s) 182, 478, 830, 886
Hpy166II GTNNAC 3 cut(s) 129, 346, 1065
Hpy188I TCNGA 6 cut(s) 32, 814, 972, 994, 1183, 1308
Hpy188III TCNNGA 4 cut(s) 185, 238, 470, 1289
Hpy8I GTNNAC 3 cut(s) 129, 346, 1065
Hpy99I CGWCG 2 cut(s) 20, 1228
HpyAV CCTTC 5 cut(s) 334, 467, 809, 864, 874
HpyCH4III ACNGT 4 cut(s) 541, 1196, 1243, 1300
HpyCH4IV ACGT 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 7 cut(s) 57, 251, 417, 757, 973, 1319, 1322
HpyF3I CTNAG 6 cut(s) 56, 643, 722, 969, 1089, 1307
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 7 cut(s) 241, 394, 473, 481, 560, 751, 1264
HspAI GCGC 2 cut(s) 409, 1320
KspAI GTTAAC 1 cut(s) 1065
Kzo9I GATC 6 cut(s) 225, 457, 481, 850, 1114, 1303
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 2 cut(s) 1019, 1039
Lsp1109I GCAGC 3 cut(s) 998, 1300, 1309
MaeI CTAG 3 cut(s) 527, 563, 692
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 4 cut(s) 283, 493, 805, 874
MalI GATC 6 cut(s) 227, 459, 483, 852, 1116, 1305
MboI GATC 6 cut(s) 225, 457, 481, 850, 1114, 1303
MboII GAAGA 7 cut(s) 20, 56, 169, 461, 605, 628, 1132
MflI RGATCY 3 cut(s) 481, 1114, 1303
MhlI GDGCHC 3 cut(s) 30, 200, 418
MluCI AATT 2 cut(s) 298, 798
MlyI GAGTC 2 cut(s) 134, 647
MnlI CCTC 8 cut(s) 50, 113, 192, 278, 612, 653, 978, 1098
Mph1103I ATGCAT 1 cut(s) 53
MroXI GAANNNNTTC 2 cut(s) 51, 161
MseI TTAA 3 cut(s) 138, 378, 1064
MslI CAYNNNNRTG 3 cut(s) 279, 576, 746
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 1 cut(s) 574
MspR9I CCNGG 4 cut(s) 575, 707, 1107, 1121
Mva1269I GAATGC 2 cut(s) 51, 53
MvaI CCWGG 3 cut(s) 707, 1107, 1121
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 7 cut(s) 57, 251, 417, 757, 973, 1319, 1322
NciI CCSGG 1 cut(s) 575
NdeI CATATG 1 cut(s) 96
NdeII GATC 6 cut(s) 225, 457, 481, 850, 1114, 1303
NlaIII CATG 7 cut(s) 241, 394, 473, 481, 560, 751, 1264
NlaIV GGNNCC 1 cut(s) 1125
NmuCI GTSAC 2 cut(s) 805, 874
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 2 cut(s) 560, 751
NspV TTCGAA 1 cut(s) 515
PaeI GCATGC 1 cut(s) 560
PagI TCATGA 2 cut(s) 237, 469
PciSI GCTCTTC 1 cut(s) 588
PctI GAATGC 2 cut(s) 51, 53
PdmI GAANNNNTTC 2 cut(s) 51, 161
PfeI GAWTC 3 cut(s) 162, 188, 941
PflMI CCANNNNNTGG 1 cut(s) 686
PkrI GCNGC 3 cut(s) 1013, 1315, 1324
PleI GAGTC 2 cut(s) 133, 646
PpsI GAGTC 2 cut(s) 133, 646
PpuMI RGGWCCY 1 cut(s) 1124
Psp5II RGGWCCY 1 cut(s) 1124
Psp6I CCWGG 3 cut(s) 705, 1105, 1119
PspGI CCWGG 3 cut(s) 705, 1105, 1119
PspN4I GGNNCC 1 cut(s) 1125
PspPI GGNCC 2 cut(s) 343, 1124
PspPPI RGGWCCY 1 cut(s) 1124
PsuI RGATCY 3 cut(s) 481, 1114, 1303
RsaI GTAC 4 cut(s) 90, 354, 521, 1245
RsaNI GTAC 4 cut(s) 89, 353, 520, 1244
RseI CAYNNNNRTG 3 cut(s) 279, 576, 746
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 3 cut(s) 138, 378, 1064
SatI GCNGC 3 cut(s) 1012, 1314, 1323
Sau3AI GATC 6 cut(s) 225, 457, 481, 850, 1114, 1303
Sau96I GGNCC 2 cut(s) 343, 1124
SchI GAGTC 2 cut(s) 134, 647
ScrFI CCNGG 4 cut(s) 575, 707, 1107, 1121
SduI GDGCHC 3 cut(s) 30, 200, 418
SfcI CTRYAG 2 cut(s) 309, 1128
SfuI TTCGAA 1 cut(s) 515
SinI GGWCC 2 cut(s) 343, 1124
SmiMI CAYNNNNRTG 3 cut(s) 279, 576, 746
SmlI CTYRAG 2 cut(s) 83, 199
SmoI CTYRAG 2 cut(s) 83, 199
SphI GCATGC 1 cut(s) 560
Sse9I AATT 2 cut(s) 298, 798
SsiI CCGC 2 cut(s) 60, 1073
SspMI CTAG 3 cut(s) 527, 563, 692
StyD4I CCNGG 4 cut(s) 573, 705, 1105, 1119
TaaI ACNGT 4 cut(s) 541, 1196, 1243, 1300
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 515
TaqII GACCGA 1 cut(s) 1094
TasI AATT 2 cut(s) 298, 798
TatI WGTACW 1 cut(s) 1243
TfiI GAWTC 3 cut(s) 162, 188, 941
Tru1I TTAA 3 cut(s) 138, 378, 1064
Tru9I TTAA 3 cut(s) 138, 378, 1064
TscAI CASTG 2 cut(s) 957, 1199
TseFI GTSAC 2 cut(s) 805, 874
TseI GCWGC 3 cut(s) 1011, 1313, 1322
Tsp45I GTSAC 2 cut(s) 805, 874
TspDTI ATGAA 8 cut(s) 21, 226, 486, 538, 638, 846, 1179, 1189
TspGWI ACGGA 2 cut(s) 61, 1127
TspRI CASTG 2 cut(s) 957, 1199
Van91I CCANNNNNTGG 1 cut(s) 686
VpaK11BI GGWCC 2 cut(s) 343, 1124
XapI RAATTY 1 cut(s) 298
XceI RCATGY 2 cut(s) 560, 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 128
XmnI GAANNNNTTC 2 cut(s) 51, 161
XspI CTAG 3 cut(s) 527, 563, 692
ZraI GACGTC 1 cut(s) 19
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.