Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004580

Physical Location & Seq

Genomic Coordinates Reverse (-)

15660521 .. 15668213

Gene Structure 7693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0172300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGTAAGCGCAAGTGCAATGCGTGTTGCGCAACCCGCAATCCTCTCCTCCTTTGTGGGTACCCACCTGCTTCACTCACCGCAGCCTCTTCACCAACTCTTCCGCTACAACCCAGGAAGCAAGCATGTCACTATGCAGTTATCCAGAGGATTTTCGGGCCTGACCGACCTCTTGTTCAATGGAAGAAATGCAGGTGAAGTGCTAAATGCCAAGCGGAAACGTTTAAGGCCTGGAAAAGTTTCACCTCGTCGCCCTGTTCCAGATCATATACCAAGGCCGCCTTATGTAAAATCTAAAAAACCGCCTGGAATTGCGAGTGGACCTGAAGTGCATGATCATGAGGGAATAGAATGCATGAGAGCTTCTGGGAGGCTTGCAGCACAGGTTCTTGAATATGCTGGGACTTTGGTCAAGCCAGGCATAAAGACTGATGAAATTGACCAAGCTGTTCACCAAATGATAATTGATAATGGGGCCTACCCTTCACCACTTGGCTATGGTGGATTTCCAAAGAGCGTCTGCACATCAGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGAGAACTGGAGGATGGTGACATAGTTAACATTGATGTCACAGTCTATTTGAATGGGTACCATGGCGATACATCAAAAACTTTCTTTTGTGGAGATGTTGGTGATGCAGGCAGAAACTTAGTTCAGGTAACTAAGGAATGCCTTGACAAAGCAATATCAATTTGTGCTCCTGGCGTGGAGTTTAAGAAAATTGGCAGAACAATCCAAGACCATGCAGATAAACATCGTTATGGTGTTGTTAGACAGTTCGTTGGGCATGGTGTTGGACGTGTCTTTCATGCTGATCCAGTTGTTCTGCACTACAGAAACAATGACAGTGGACGCATGGTGTTAAATCAAACCTTCACAATAGAACCGATGCTAACGATTGGTAGCTATAATCCTGTAATGTGGGACGACGATTGGACAGTTGTTACAGAAGATGGAAGCTTATCAGCACAGTTTGAACATACTATCTTAATAACCAAGGATGGGGCTGAGATACTAACTCAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005092 GO:0005093 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010721 GO:0010769 GO:0010771 GO:0010975 GO:0010977 GO:0022008 GO:0022603 GO:0022604 GO:0023052 GO:0030154 GO:0030234 GO:0030695 GO:0031344 GO:0031345 GO:0032386 GO:0032387 GO:0032482 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0035556 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048046 GO:0048519 GO:0048523 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050770 GO:0050771 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051093 GO:0051128 GO:0051129 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051716 GO:0051960 GO:0051961 GO:0060284 GO:0060341 GO:0060589 GO:0065007 GO:0065009 GO:0070201 GO:0090087 GO:0090313 GO:0090315 GO:0090317 GO:0098772 GO:0120035 GO:1903533 GO:1903827 GO:1903828 GO:1904950 GO:1905475 GO:1905476 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

353

Amino Acids

38.7

Weight (kDa)

6.96

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	117 - 344	1.3e-52	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09550
fragaria_vesca	FvH4_1g19700
malus_domestica	MD01G1038700.v1.1 MD15G1313100.v1.1
prunus_persica	Prupe.6G201200_v2.0.a1 Prupe.8G069400_v2.0.a1 Prupe.8G069400_v2.0.a1
pyrus_communis	pycom01g06660 pycom15g27650
rosa_chinensis	RchiOBHm_Chr2g0111261 RchiOBHm_Chr6g0271061
rosa_laevigata	RLG00000013748 RLG00000017880
rosa_multiflora	Rmu_co8304329.1_g000001 Rmu_sc0000239.1_g000071 Rmu_sc0000744.1_g000066 Rmu_sc0001476.1_g000004 Rmu_sc0001721.1_g000013 Rmu_sc0002882.1_g000016 Rmu_sc0004447.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132560 Rroxscaffold_7G00197320
rosa_rugosa	Rorug02G0172200 Rorug02G0172300 Rorug06G0058200
rosa_samantha	Rh2BG237100 Rh2DG232700 Rh6DG169400
rosa_wichuraiana	Rw0G009900 Rw2G017390 Rw6G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	75, 182
Acc16I	TGCGCA	1 cut(s)	30
Acc36I	ACCTGC	2 cut(s)	75, 182
Acc65I	GGTACC	2 cut(s)	59, 621
AccB1I	GGYRCC	2 cut(s)	59, 621
AciI	CCGC	6 cut(s)	36, 80, 103, 214, 278, 302
AclI	AACGTT	1 cut(s)	220
AclWI	GGATC	1 cut(s)	842
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	61, 623
AfiI	CCNNNNNNNGG	2 cut(s)	571, 1035
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	4 cut(s)	178, 392, 616, 1010
AjiI	CACGTC	1 cut(s)	833
AjnI	CCWGG	5 cut(s)	112, 229, 304, 415, 733
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	4 cut(s)	362, 446, 939, 993
AluI	AGCT	4 cut(s)	362, 446, 939, 993
Alw21I	GWGCWC	1 cut(s)	733
AlwI	GGATC	1 cut(s)	842
Ama87I	CYCGRG	1 cut(s)	564
AoxI	GGCC	4 cut(s)	157, 227, 275, 474
ApeKI	GCWGC	2 cut(s)	82, 377
Asp700I	GAANNNNTTC	1 cut(s)	238
Asp718I	GGTACC	2 cut(s)	59, 621
AspLEI	GCGC	2 cut(s)	11, 31
AspS9I	GGNCC	3 cut(s)	157, 320, 474
AsuHPI	GGTGA	8 cut(s)	69, 83, 206, 234, 443, 477, 593, 677
AvaI	CYCGRG	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	320
BanI	GGYRCC	2 cut(s)	59, 621
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	2 cut(s)	94, 389
BccI	CCATC	3 cut(s)	572, 980, 1028
BciT130I	CCWGG	5 cut(s)	114, 231, 306, 417, 735
BclI	TGATCA	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	865
BfuAI	ACCTGC	2 cut(s)	75, 182
BisI	GCNGC	3 cut(s)	83, 278, 378
BlsI	GCNGC	3 cut(s)	84, 279, 379
Bme1390I	CCNGG	5 cut(s)	114, 231, 306, 417, 735
Bme18I	GGWCC	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	564
BmgBI	CACGTC	1 cut(s)	833
BmgT120I	GGNCC	3 cut(s)	157, 320, 474
BmiI	GGNNCC	3 cut(s)	61, 475, 623
BmrFI	CCNGG	5 cut(s)	114, 231, 306, 417, 735
BmsI	GCATC	2 cut(s)	658, 912
BoxI	GACNNNNGTC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	593
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	5 cut(s)	112, 272, 547, 625, 1029
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 1035
Bse1I	ACTGG	2 cut(s)	576, 851
Bse3DI	GCAATG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
BseDI	CCNNGG	5 cut(s)	112, 272, 547, 625, 1029
BseGI	GGATG	2 cut(s)	583, 1039
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	571, 1035
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	1032
BseNI	ACTGG	2 cut(s)	576, 851
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	94, 389
BseYI	CCCAGC	1 cut(s)	398
BsgI	GTGCAG	2 cut(s)	505, 845
BshFI	GGCC	4 cut(s)	159, 229, 277, 476
BshNI	GGYRCC	2 cut(s)	59, 621
BsiHKAI	GWGCWC	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	564
BslFI	GGGAC	2 cut(s)	415, 971
BslI	CCNNNNNNNGG	2 cut(s)	571, 1035
BsmFI	GGGAC	2 cut(s)	415, 971
BsmI	GAATGC	3 cut(s)	356, 542, 707
BsnI	GGCC	4 cut(s)	159, 229, 277, 476
BsoBI	CYCGRG	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp143I	GATC	3 cut(s)	262, 334, 847
Bsp19I	CCATGG	2 cut(s)	547, 625
BspACI	CCGC	6 cut(s)	36, 80, 103, 214, 278, 302
BspANI	GGCC	4 cut(s)	159, 229, 277, 476
BspCNI	CTCAG	1 cut(s)	1033
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	61, 475, 623
BspMI	ACCTGC	2 cut(s)	75, 182
BspPI	GGATC	1 cut(s)	842
BspT107I	GGYRCC	2 cut(s)	59, 621
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	576, 851
BssECI	CCNNGG	5 cut(s)	112, 272, 547, 625, 1029
BssMI	GATC	3 cut(s)	262, 334, 847
BssT1I	CCWWGG	4 cut(s)	272, 547, 625, 1029
Bst2UI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
Bst4CI	ACNGT	5 cut(s)	607, 810, 881, 973, 1005
Bst6I	CTCTTC	2 cut(s)	93, 104
BstC8I	GCNNGC	3 cut(s)	122, 375, 673
BstDEI	CTNAG	4 cut(s)	682, 696, 1041, 1053
BstDSI	CCRYGG	2 cut(s)	547, 625
BstF5I	GGATG	2 cut(s)	583, 1039
BstHHI	GCGC	2 cut(s)	11, 31
BstKTI	GATC	3 cut(s)	265, 337, 850
BstMBI	GATC	3 cut(s)	262, 334, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 35
BstNI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
BstNSI	RCATGY	1 cut(s)	128
BstPAI	GACNNNNGTC	1 cut(s)	407
BstSCI	CCNGG	5 cut(s)	112, 229, 304, 415, 733
BstSFI	CTRYAG	1 cut(s)	865
BstV1I	GCAGC	2 cut(s)	94, 389
BsuRI	GGCC	4 cut(s)	159, 229, 277, 476
BtgI	CCRYGG	2 cut(s)	547, 625
BtrI	CACGTC	1 cut(s)	833
BtsCI	GGATG	2 cut(s)	583, 1039
BtsIMutI	CAGTG	3 cut(s)	534, 886, 1061
BveI	ACCTGC	2 cut(s)	75, 182
Cac8I	GCNNGC	3 cut(s)	122, 375, 673
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	11, 31
Cfr13I	GGNCC	3 cut(s)	157, 320, 474
CseI	GACGC	2 cut(s)	505, 894
Csp6I	GTAC	2 cut(s)	60, 622
CspCI	CAANNNNNGTGG	2 cut(s)	862, 897
CviQI	GTAC	2 cut(s)	60, 622
DdeI	CTNAG	4 cut(s)	682, 696, 1041, 1053
DpnI	GATC	3 cut(s)	264, 336, 849
DpnII	GATC	3 cut(s)	262, 334, 847
Eam1104I	CTCTTC	2 cut(s)	93, 104
EarI	CTCTTC	2 cut(s)	93, 104
Eco130I	CCWWGG	4 cut(s)	272, 547, 625, 1029
Eco147I	AGGCCT	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	564
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	5 cut(s)	112, 229, 304, 415, 733
EcoT14I	CCWWGG	4 cut(s)	272, 547, 625, 1029
EcoT22I	ATGCAT	2 cut(s)	356, 542
ErhI	CCWWGG	4 cut(s)	272, 547, 625, 1029
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	2 cut(s)	415, 971
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	83, 278, 378
FokI	GGATG	2 cut(s)	590, 1046
Fsp4HI	GCNGC	3 cut(s)	83, 278, 378
FspI	TGCGCA	1 cut(s)	30
GlaI	GCGC	2 cut(s)	10, 30
GluI	GCNGC	3 cut(s)	83, 278, 378
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	4 cut(s)	159, 229, 277, 476
HgaI	GACGC	2 cut(s)	505, 894
HhaI	GCGC	2 cut(s)	11, 31
Hin6I	GCGC	2 cut(s)	9, 29
HinP1I	GCGC	2 cut(s)	9, 29
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	991
HinfI	GANTC	1 cut(s)	560
HpaI	GTTAAC	1 cut(s)	592
HphI	GGTGA	8 cut(s)	69, 83, 206, 234, 443, 477, 593, 677
Hpy166II	GTNNAC	4 cut(s)	320, 451, 592, 884
Hpy188III	TCNNGA	5 cut(s)	144, 260, 338, 389, 564
Hpy8I	GTNNAC	4 cut(s)	320, 451, 592, 884
Hpy99I	CGWCG	2 cut(s)	252, 965
HpyAV	CCTTC	2 cut(s)	492, 916
HpyCH4III	ACNGT	5 cut(s)	607, 810, 881, 973, 1005
HpyCH4IV	ACGT	2 cut(s)	220, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 35
HpyF3I	CTNAG	4 cut(s)	682, 696, 1041, 1053
HpySE526I	ACGT	2 cut(s)	220, 832
HspAI	GCGC	2 cut(s)	9, 29
KpnI	GGTACC	2 cut(s)	63, 625
Ksp22I	TGATCA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	3 cut(s)	262, 334, 847
LmnI	GCTCC	1 cut(s)	736
Lsp1109I	GCAGC	2 cut(s)	94, 389
LweI	GCATC	2 cut(s)	658, 912
MaeII	ACGT	2 cut(s)	220, 832
MaeIII	GTNAC	5 cut(s)	127, 581, 601, 691, 976
MalI	GATC	3 cut(s)	264, 336, 849
MboI	GATC	3 cut(s)	262, 334, 847
MboII	GAAGA	4 cut(s)	80, 91, 195, 995
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	5 cut(s)	309, 435, 462, 723, 753
MmeI	TCCRAC	1 cut(s)	808
MnlI	CCTC	9 cut(s)	53, 58, 96, 140, 179, 255, 334, 363, 568
Mph1103I	ATGCAT	2 cut(s)	356, 542
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	5 cut(s)	224, 591, 747, 896, 1022
MslI	CAYNNNNRTG	3 cut(s)	336, 527, 792
MspR9I	CCNGG	5 cut(s)	114, 231, 306, 417, 735
Mva1269I	GAATGC	3 cut(s)	356, 542, 707
MvaI	CCWGG	5 cut(s)	114, 231, 306, 417, 735
MwoI	GCNNNNNNNGC	2 cut(s)	28, 35
NcoI	CCATGG	2 cut(s)	547, 625
NdeII	GATC	3 cut(s)	262, 334, 847
NlaIV	GGNNCC	3 cut(s)	61, 475, 623
NmuCI	GTSAC	3 cut(s)	127, 581, 601
NsbI	TGCGCA	1 cut(s)	30
NsiI	ATGCAT	2 cut(s)	356, 542
NspI	RCATGY	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	527
PagI	TCATGA	1 cut(s)	337
PaqCI	CACCTGC	2 cut(s)	75, 182
PceI	AGGCCT	1 cut(s)	229
PctI	GAATGC	3 cut(s)	356, 542, 707
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	560
PkrI	GCNGC	3 cut(s)	84, 279, 379
PshAI	GACNNNNGTC	1 cut(s)	407
Psp1406I	AACGTT	1 cut(s)	220
Psp6I	CCWGG	5 cut(s)	112, 229, 304, 415, 733
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	5 cut(s)	112, 229, 304, 415, 733
PspN4I	GGNNCC	3 cut(s)	61, 475, 623
PspPI	GGNCC	3 cut(s)	157, 320, 474
RsaI	GTAC	2 cut(s)	61, 623
RsaNI	GTAC	2 cut(s)	60, 622
RseI	CAYNNNNRTG	3 cut(s)	336, 527, 792
SaqAI	TTAA	5 cut(s)	224, 591, 747, 896, 1022
SatI	GCNGC	3 cut(s)	83, 278, 378
Sau3AI	GATC	3 cut(s)	262, 334, 847
Sau96I	GGNCC	3 cut(s)	157, 320, 474
ScrFI	CCNGG	5 cut(s)	114, 231, 306, 417, 735
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	2 cut(s)	658, 912
SfcI	CTRYAG	1 cut(s)	865
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	3 cut(s)	336, 527, 792
Sse9I	AATT	5 cut(s)	309, 435, 462, 723, 753
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	6 cut(s)	36, 80, 103, 214, 278, 302
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	5 cut(s)	112, 229, 304, 415, 733
StyI	CCWWGG	4 cut(s)	272, 547, 625, 1029
TaaI	ACNGT	5 cut(s)	607, 810, 881, 973, 1005
TaiI	ACGT	2 cut(s)	223, 835
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	5 cut(s)	309, 435, 462, 723, 753
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	5 cut(s)	224, 591, 747, 896, 1022
Tru9I	TTAA	5 cut(s)	224, 591, 747, 896, 1022
TscAI	CASTG	3 cut(s)	534, 886, 1061
TseFI	GTSAC	3 cut(s)	127, 581, 601
TseI	GCWGC	2 cut(s)	82, 377
Tsp45I	GTSAC	3 cut(s)	127, 581, 601
TspDTI	ATGAA	3 cut(s)	447, 549, 830
TspRI	CASTG	3 cut(s)	534, 886, 1061
VpaK11BI	GGWCC	1 cut(s)	320
XceI	RCATGY	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	238
Zsp2I	ATGCAT	2 cut(s)	356, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.