Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004447.1

Orthogroup ID

OG0004580

Physical Location & Seq

Genomic Coordinates Forward (+)

12960 .. 13388

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004447.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgaagtctatgcagccgcgccacaacttcttacgggagacgacggagcctccccagtcgccaaaccctagctccggcaagcctagggtcccgcggaagcataaagcctcgaaggagaacgcgcctccgtcttcagatctcaactatacggccttcgattcgaagccttcgcccgcggccaagttgaagagtccgctgccgccgcggccgccgccgtcaaatcctctcaaacggaagctcgagatgctccctgagaactccgtccatggagcctctgattccggcgtccaggtactgcgaccgcttccgcttttctttaatcctgagattgctaattcgggaaatcggtttgttttgtgtgaaatcttgtggtttttgcttgtgatttggacttttgttgatggtgatttggtgttattgatcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000280 GO:0000910 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008574 GO:0009524 GO:0009555 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033206 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0051301 GO:0051321 GO:0051704 GO:0055046 GO:0061640 GO:0071840 GO:0080175 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

142

Amino Acids

15.83

Weight (kDa)

9.77

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09550
fragaria_vesca	FvH4_1g19700
malus_domestica	MD01G1038700.v1.1 MD15G1313100.v1.1
prunus_persica	Prupe.6G201200_v2.0.a1 Prupe.8G069400_v2.0.a1 Prupe.8G069400_v2.0.a1
pyrus_communis	pycom01g06660 pycom15g27650
rosa_chinensis	RchiOBHm_Chr2g0111261 RchiOBHm_Chr6g0271061
rosa_laevigata	RLG00000013748 RLG00000017880
rosa_multiflora	Rmu_co8304329.1_g000001 Rmu_sc0000239.1_g000071 Rmu_sc0000744.1_g000066 Rmu_sc0001476.1_g000004 Rmu_sc0001721.1_g000013 Rmu_sc0002882.1_g000016 Rmu_sc0004447.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132560 Rroxscaffold_7G00197320
rosa_rugosa	Rorug02G0172200 Rorug02G0172300 Rorug06G0058200
rosa_samantha	Rh2BG237100 Rh2DG232700 Rh6DG169400
rosa_wichuraiana	Rw0G009900 Rw2G017390 Rw6G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	19, 94, 122, 176, 205
AclWI	GGATC	1 cut(s)	415
AcoI	YGGCCR	2 cut(s)	177, 206
AcuI	CTGAAG	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	2 cut(s)	72, 238
AluI	AGCT	2 cut(s)	72, 238
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	415
AlwNI	CAGNNNCTG	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	150, 177, 206
ApeKI	GCWGC	2 cut(s)	13, 196
AspA2I	CCTAGG	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	21, 124
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	416
AsuII	TTCGAA	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	88
AvrII	CCTAGG	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	25, 183
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	2 cut(s)	165, 199
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	69, 84
BglI	GCCNNNNNGGC	1 cut(s)	205
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	9 cut(s)	14, 17, 177, 197, 200, 203, 206, 209, 212
BlnI	CCTAGG	1 cut(s)	83
BlsI	GCNGC	9 cut(s)	15, 18, 178, 198, 201, 204, 207, 210, 213
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	4 cut(s)	48, 89, 90, 271
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	5 cut(s)	83, 92, 174, 203, 265
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 56, 64, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	5 cut(s)	83, 92, 174, 203, 265
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	243, 315
BseNI	ACTGG	1 cut(s)	55
BseX3I	CGGCCG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	25, 183
Bsh1236I	CGCG	5 cut(s)	19, 94, 122, 176, 205
Bsh1285I	CGRYCG	2 cut(s)	209, 302
BshFI	GGCC	3 cut(s)	152, 179, 208
BsiEI	CGRYCG	2 cut(s)	209, 302
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	75, 282
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	152, 179, 208
BsoBI	CYCGRG	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	136, 420
Bsp19I	CCATGG	1 cut(s)	265
BspANI	GGCC	3 cut(s)	152, 179, 208
BspCNI	CTCAG	2 cut(s)	244, 316
BspFNI	CGCG	5 cut(s)	19, 94, 122, 176, 205
BspLI	GGNNCC	4 cut(s)	48, 89, 90, 271
BspPI	GGATC	1 cut(s)	415
BspT104I	TTCGAA	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	5 cut(s)	83, 92, 174, 203, 265
BssMI	GATC	2 cut(s)	136, 420
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	83, 265
Bst2UI	CCWGG	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	80, 174
BstDEI	CTNAG	2 cut(s)	252, 324
BstDSI	CCRYGG	4 cut(s)	92, 174, 203, 265
BstFNI	CGCG	5 cut(s)	19, 94, 122, 176, 205
BstHHI	GCGC	2 cut(s)	21, 124
BstKTI	GATC	2 cut(s)	139, 423
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	2 cut(s)	136, 420
BstMCI	CGRYCG	2 cut(s)	209, 302
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 205, 208, 211, 244
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstUI	CGCG	5 cut(s)	19, 94, 122, 176, 205
BstV1I	GCAGC	2 cut(s)	25, 183
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BstZI	CGGCCG	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	152, 179, 208
BtgI	CCRYGG	4 cut(s)	92, 174, 203, 265
Cac8I	GCNNGC	2 cut(s)	80, 174
CaiI	CAGNNNCTG	1 cut(s)	295
CciNI	GCGGCCGC	1 cut(s)	206
CfoI	GCGC	2 cut(s)	21, 124
Cfr13I	GGNCC	1 cut(s)	88
Cfr42I	CCGCGG	3 cut(s)	95, 177, 206
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	1 cut(s)	266
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	252, 324
DpnI	GATC	2 cut(s)	138, 422
DpnII	GATC	2 cut(s)	136, 420
EaeI	YGGCCR	2 cut(s)	177, 206
EagI	CGGCCG	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EclXI	CGGCCG	1 cut(s)	206
Eco130I	CCWWGG	2 cut(s)	83, 265
Eco47I	GGWCC	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	83, 265
ErhI	CCWWGG	2 cut(s)	83, 265
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	269
FaiI	YATR	4 cut(s)	11, 102, 147, 267
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	265
FauI	CCCGC	2 cut(s)	99, 181
Fnu4HI	GCNGC	9 cut(s)	14, 17, 177, 197, 200, 203, 206, 209, 212
Fsp4HI	GCNGC	9 cut(s)	14, 17, 177, 197, 200, 203, 206, 209, 212
FspBI	CTAG	2 cut(s)	69, 84
GlaI	GCGC	2 cut(s)	20, 123
GluI	GCNGC	9 cut(s)	14, 17, 177, 197, 200, 203, 206, 209, 212
HaeIII	GGCC	3 cut(s)	152, 179, 208
HapII	CCGG	2 cut(s)	75, 282
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	2 cut(s)	21, 124
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	2 cut(s)	19, 122
HinP1I	GCGC	2 cut(s)	19, 122
HinfI	GANTC	3 cut(s)	158, 190, 278
HpaII	CCGG	2 cut(s)	75, 282
HphI	GGTGA	1 cut(s)	416
Hpy188I	TCNGA	2 cut(s)	136, 277
Hpy188III	TCNNGA	3 cut(s)	241, 323, 339
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	106, 163, 177
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 205, 208, 211, 244
HpyF3I	CTNAG	2 cut(s)	252, 324
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	2 cut(s)	19, 122
KflI	GGGWCCC	1 cut(s)	88
KspI	CCGCGG	3 cut(s)	95, 177, 206
Kzo9I	GATC	2 cut(s)	136, 420
LmnI	GCTCC	4 cut(s)	46, 77, 252, 269
LpnPI	CCDG	7 cut(s)	68, 88, 264, 275, 295, 302, 336
Lsp1109I	GCAGC	2 cut(s)	25, 183
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	69, 84
MalI	GATC	2 cut(s)	138, 422
MboI	GATC	2 cut(s)	136, 420
MboII	GAAGA	2 cut(s)	123, 199
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	60, 118, 135, 234, 283
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	4 cut(s)	94, 176, 196, 205
MspI	CCGG	2 cut(s)	75, 282
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MvnI	CGCG	5 cut(s)	19, 94, 122, 176, 205
MwoI	GCNNNNNNNGC	5 cut(s)	202, 205, 208, 211, 244
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	2 cut(s)	136, 420
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	4 cut(s)	48, 89, 90, 271
NotI	GCGGCCGC	1 cut(s)	206
NspV	TTCGAA	1 cut(s)	161
PaeR7I	CTCGAG	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	158, 278
PkrI	GCNGC	9 cut(s)	15, 18, 178, 198, 201, 204, 207, 210, 213
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	4 cut(s)	48, 89, 90, 271
PspPI	GGNCC	1 cut(s)	88
PspPPI	RGGWCCY	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SacII	CCGCGG	3 cut(s)	95, 177, 206
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	9 cut(s)	14, 17, 177, 197, 200, 203, 206, 209, 212
Sau3AI	GATC	2 cut(s)	136, 420
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	3 cut(s)	74, 240, 294
SfaNI	GCATC	1 cut(s)	234
Sfr274I	CTCGAG	1 cut(s)	239
Sfr303I	CCGCGG	3 cut(s)	95, 177, 206
SfuI	TTCGAA	1 cut(s)	161
SgrBI	CCGCGG	3 cut(s)	95, 177, 206
SinI	GGWCC	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	334
SspMI	CTAG	2 cut(s)	69, 84
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	2 cut(s)	83, 265
TaqI	TCGA	4 cut(s)	110, 156, 161, 240
TasI	AATT	1 cut(s)	334
TauI	GCSGC	7 cut(s)	19, 179, 202, 205, 208, 211, 214
TfiI	GAWTC	2 cut(s)	158, 278
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	2 cut(s)	13, 196
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	4 cut(s)	59, 117, 247, 250
VpaK11BI	GGWCC	1 cut(s)	88
XhoI	CTCGAG	1 cut(s)	239
XmaJI	CCTAGG	1 cut(s)	83
XspI	CTAG	2 cut(s)	69, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.