Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004580

Physical Location & Seq

Genomic Coordinates Reverse (-)

7857200 .. 7858611

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0058200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGGAACGATTTAATCAATCAAGTTTAAGCACCATGGAGGACAAGTTTGAAGGAGGATCTTACTATGTTTTCTCTTTTTTGAAAGGGATCTTACTATGTTTAACAGAAGAGGGTTTACTCACCATAATTGATTTTTGTTTTACGAACGGTTCCAAAATTGAAACCATCCCAAAATCCAAATCCTCCCTAAATCGATCTAGGGCTCCGACGAAGGTAGCGGACGAAGCAGCTTGCGGATCGAGGCGGCGAAGCAACCGGCGAAAGGAGGCTGCGAATCCGGCGAAGGGAGGCTGCGAATCCGGCGAGGAAGCGCGAGACCCAGGCAGAGAAGTGAAGCCTTTGACTGCCGAGGAATTGGAGCAGTACGAGTCCATTTCGGAGTCCTCCGACTCTGACTCCGACGACGGCCTCGAAGACGAGGAAGAGGACGGCGACGAAGACGAAGACGAGGATGACGACGACGACGACGCGGATGACGACGACGAAGACGAAGACGAGGATGACGACGACGACGACGCAGATGACGACGACGATGAGGACGATGAGGATGAAGATGACGACGACGATGTCCAGGAGGTCGTACAGTCCTCCGGTGGCCCTCCGGTTCAGTCAATAGACGATGAGGACGACGAAGAAGACGAGGAAGACGCTGAAGGAGGCGATGACGACGACGACGGCGAGGGCGAGGATGAGGTTACCGGAGCTCTGAGAGCTGGGGCGGTGGAGTACCCCGAGCGACTGGGCCAGCCTGTGTGCCAGGTATTTGGTTTTTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

260

Amino Acids

28.61

Weight (kDa)

4.05

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09550
fragaria_vesca	FvH4_1g19700
malus_domestica	MD01G1038700.v1.1 MD15G1313100.v1.1
prunus_persica	Prupe.6G201200_v2.0.a1 Prupe.8G069400_v2.0.a1 Prupe.8G069400_v2.0.a1
pyrus_communis	pycom01g06660 pycom15g27650
rosa_chinensis	RchiOBHm_Chr2g0111261 RchiOBHm_Chr6g0271061
rosa_laevigata	RLG00000013748 RLG00000017880
rosa_multiflora	Rmu_co8304329.1_g000001 Rmu_sc0000239.1_g000071 Rmu_sc0000744.1_g000066 Rmu_sc0001476.1_g000004 Rmu_sc0001721.1_g000013 Rmu_sc0002882.1_g000016 Rmu_sc0004447.1_g000003
rosa_roxburghii	Rroxscaffold_2G00132560 Rroxscaffold_7G00197320
rosa_rugosa	Rorug02G0172200 Rorug02G0172300 Rorug06G0058200
rosa_samantha	Rh2BG237100 Rh2DG232700 Rh6DG169400
rosa_wichuraiana	Rw0G009900 Rw2G017390 Rw6G015190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	569
AccII	CGCG	2 cut(s)	316, 473
AciI	CCGC	5 cut(s)	221, 237, 247, 473, 722
AclWI	GGATC	3 cut(s)	67, 98, 247
AcuI	CTGAAG	1 cut(s)	675
AfaI	GTAC	3 cut(s)	368, 585, 731
AfiI	CCNNNNNNNGG	2 cut(s)	265, 287
AgsI	TTSAA	3 cut(s)	53, 85, 164
AjnI	CCWGG	3 cut(s)	322, 573, 759
AluBI	AGCT	3 cut(s)	233, 707, 716
AluI	AGCT	3 cut(s)	233, 707, 716
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	3 cut(s)	67, 98, 247
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	3 cut(s)	409, 598, 745
ApeKI	GCWGC	3 cut(s)	230, 272, 294
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	599, 745
AsuHPI	GGTGA	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	734
BanII	GRGCYC	2 cut(s)	208, 709
BarI	GAAGNNNNNNTAC	2 cut(s)	102, 134
BbsI	GAAGAC	7 cut(s)	423, 447, 453, 495, 501, 645, 654
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	3 cut(s)	242, 259, 281
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	3 cut(s)	424, 448, 694
BciT130I	CCWGG	3 cut(s)	324, 575, 761
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	4 cut(s)	231, 248, 273, 295
BlsI	GCNGC	4 cut(s)	232, 249, 274, 296
Bme1390I	CCNGG	3 cut(s)	324, 575, 761
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	2 cut(s)	599, 745
BmiI	GGNNCC	2 cut(s)	154, 207
BmrFI	CCNGG	3 cut(s)	324, 575, 761
BmrI	ACTGGG	1 cut(s)	752
BmuI	ACTGGG	1 cut(s)	752
BpiI	GAAGAC	7 cut(s)	423, 447, 453, 495, 501, 645, 654
Bsa29I	ATCGAT	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	36, 322, 351
BsaWI	WCCGGW	3 cut(s)	593, 604, 701
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 287
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	747
BseBI	CCWGG	3 cut(s)	324, 575, 761
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	36, 322, 351
BseGI	GGATG	6 cut(s)	168, 460, 481, 508, 556, 697
BseLI	CCNNNNNNNGG	2 cut(s)	265, 287
BseMII	CTCAG	1 cut(s)	701
BseNI	ACTGG	1 cut(s)	747
BseXI	GCAGC	3 cut(s)	242, 259, 281
BseYI	CCCAGC	1 cut(s)	716
Bsh1236I	CGCG	2 cut(s)	316, 473
BshFI	GGCC	3 cut(s)	411, 600, 747
BshVI	ATCGAT	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	709
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	6 cut(s)	259, 281, 303, 594, 605, 702
BslI	CCNNNNNNNGG	2 cut(s)	265, 287
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	3 cut(s)	411, 600, 747
Bso31I	GGTCTC	1 cut(s)	312
BsoBI	CYCGRG	1 cut(s)	734
Bsp1286I	GDGCHC	2 cut(s)	208, 709
Bsp143I	GATC	4 cut(s)	59, 90, 197, 239
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	5 cut(s)	221, 237, 247, 473, 722
BspANI	GGCC	3 cut(s)	411, 600, 747
BspCNI	CTCAG	1 cut(s)	702
BspDI	ATCGAT	1 cut(s)	196
BspFNI	CGCG	2 cut(s)	316, 473
BspLI	GGNNCC	2 cut(s)	154, 207
BspPI	GGATC	3 cut(s)	67, 98, 247
BspTNI	GGTCTC	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	747
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	3 cut(s)	36, 322, 351
BssMI	GATC	4 cut(s)	59, 90, 197, 239
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	3 cut(s)	324, 575, 761
Bst4CI	ACNGT	2 cut(s)	152, 588
Bst6I	CTCTTC	2 cut(s)	105, 420
BstC8I	GCNNGC	2 cut(s)	235, 749
BstDEI	CTNAG	1 cut(s)	710
BstDSI	CCRYGG	1 cut(s)	36
BstEII	GGTNACC	1 cut(s)	697
BstF5I	GGATG	6 cut(s)	168, 460, 481, 508, 556, 697
BstFNI	CGCG	2 cut(s)	316, 473
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	4 cut(s)	62, 93, 200, 242
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	4 cut(s)	59, 90, 197, 239
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 281, 303, 713
BstNI	CCWGG	3 cut(s)	324, 575, 761
BstPI	GGTNACC	1 cut(s)	697
BstSCI	CCNGG	3 cut(s)	322, 573, 759
BstUI	CGCG	2 cut(s)	316, 473
BstV1I	GCAGC	3 cut(s)	242, 259, 281
BstV2I	GAAGAC	7 cut(s)	423, 447, 453, 495, 501, 645, 654
BstX2I	RGATCY	2 cut(s)	59, 90
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	2 cut(s)	59, 90
Bsu15I	ATCGAT	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	411, 600, 747
BsuTUI	ATCGAT	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	6 cut(s)	168, 460, 481, 508, 556, 697
Cac8I	GCNNGC	2 cut(s)	235, 749
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	599, 745
ClaI	ATCGAT	1 cut(s)	196
CseI	GACGC	3 cut(s)	479, 527, 659
Csp6I	GTAC	3 cut(s)	367, 584, 730
CviAII	CATG	1 cut(s)	37
CviQI	GTAC	3 cut(s)	367, 584, 730
DdeI	CTNAG	1 cut(s)	710
DpnI	GATC	4 cut(s)	61, 92, 199, 241
DpnII	GATC	4 cut(s)	59, 90, 197, 239
DrdI	GACNNNNNNGTC	1 cut(s)	569
DseDI	GACNNNNNNGTC	1 cut(s)	569
Eam1104I	CTCTTC	2 cut(s)	105, 420
EarI	CTCTTC	2 cut(s)	105, 420
Ecl136II	GAGCTC	1 cut(s)	707
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	2 cut(s)	208, 709
Eco31I	GGTCTC	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	675
Eco88I	CYCGRG	1 cut(s)	734
Eco91I	GGTNACC	1 cut(s)	697
EcoICRI	GAGCTC	1 cut(s)	707
EcoO65I	GGTNACC	1 cut(s)	697
EcoRII	CCWGG	3 cut(s)	322, 573, 759
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	208, 709
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	40
FaiI	YATR	4 cut(s)	38, 69, 100, 128
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	4 cut(s)	231, 248, 273, 295
FokI	GGATG	6 cut(s)	155, 467, 488, 515, 563, 704
FriOI	GRGCYC	2 cut(s)	208, 709
Fsp4HI	GCNGC	4 cut(s)	231, 248, 273, 295
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	4 cut(s)	231, 248, 273, 295
GsaI	CCCAGC	1 cut(s)	720
HaeIII	GGCC	3 cut(s)	411, 600, 747
HapII	CCGG	6 cut(s)	259, 281, 303, 594, 605, 702
HgaI	GACGC	3 cut(s)	479, 527, 659
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	6 cut(s)	277, 299, 371, 383, 392, 398
HpaII	CCGG	6 cut(s)	259, 281, 303, 594, 605, 702
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	6 cut(s)	210, 382, 391, 397, 403, 711
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	4 cut(s)	47, 208, 280, 650
HpyCH4III	ACNGT	2 cut(s)	152, 588
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 281, 303, 713
HpyF3I	CTNAG	1 cut(s)	710
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	1 cut(s)	314
Kzo9I	GATC	4 cut(s)	59, 90, 197, 239
LmnI	GCTCC	3 cut(s)	211, 361, 704
Lsp1109I	GCAGC	3 cut(s)	242, 259, 281
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	697, 776
MalI	GATC	4 cut(s)	61, 92, 199, 241
MboI	GATC	4 cut(s)	59, 90, 197, 239
MflI	RGATCY	2 cut(s)	59, 90
MhlI	GDGCHC	2 cut(s)	208, 709
MluCI	AATT	3 cut(s)	129, 159, 356
MlyI	GAGTC	4 cut(s)	380, 386, 392, 392
MmeI	TCCRAC	3 cut(s)	233, 414, 426
MseI	TTAA	3 cut(s)	15, 29, 104
MspI	CCGG	6 cut(s)	259, 281, 303, 594, 605, 702
MspR9I	CCNGG	3 cut(s)	324, 575, 761
MvaI	CCWGG	3 cut(s)	324, 575, 761
MvnI	CGCG	2 cut(s)	316, 473
MwoI	GCNNNNNNNGC	4 cut(s)	227, 281, 303, 713
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	4 cut(s)	59, 90, 197, 239
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	2 cut(s)	154, 207
NmeAIII	GCCGAG	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	277, 299
PflFI	GACNNNGTC	1 cut(s)	569
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	4 cut(s)	232, 249, 274, 296
PleI	GAGTC	4 cut(s)	379, 386, 391, 392
PpsI	GAGTC	4 cut(s)	379, 386, 391, 392
Psp124BI	GAGCTC	1 cut(s)	709
Psp6I	CCWGG	3 cut(s)	322, 573, 759
PspEI	GGTNACC	1 cut(s)	697
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	3 cut(s)	322, 573, 759
PspN4I	GGNNCC	2 cut(s)	154, 207
PspPI	GGNCC	2 cut(s)	599, 745
PsuI	RGATCY	2 cut(s)	59, 90
PsyI	GACNNNGTC	1 cut(s)	569
RsaI	GTAC	3 cut(s)	368, 585, 731
RsaNI	GTAC	3 cut(s)	367, 584, 730
SacI	GAGCTC	1 cut(s)	709
SaqAI	TTAA	3 cut(s)	15, 29, 104
SatI	GCNGC	4 cut(s)	231, 248, 273, 295
Sau3AI	GATC	4 cut(s)	59, 90, 197, 239
Sau96I	GGNCC	2 cut(s)	599, 745
SchI	GAGTC	4 cut(s)	380, 386, 392, 392
ScrFI	CCNGG	3 cut(s)	324, 575, 761
SduI	GDGCHC	2 cut(s)	208, 709
SetI	ASST	7 cut(s)	219, 235, 582, 699, 709, 718, 765
Sse9I	AATT	3 cut(s)	129, 159, 356
SsiI	CCGC	5 cut(s)	221, 237, 247, 473, 722
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	709
StyD4I	CCNGG	3 cut(s)	322, 573, 759
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	152, 588
TaqI	TCGA	3 cut(s)	196, 242, 414
TasI	AATT	3 cut(s)	129, 159, 356
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	2 cut(s)	277, 299
Tru1I	TTAA	3 cut(s)	15, 29, 104
Tru9I	TTAA	3 cut(s)	15, 29, 104
TseI	GCWGC	3 cut(s)	230, 272, 294
TspDTI	ATGAA	1 cut(s)	567
Tth111I	GACNNNGTC	1 cut(s)	569
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.