AT5G10050

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013333
Physical Location & Seq
Forward (+)
3144200 .. 3145760
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G10050.1

Sequence Viewer

Length: 840 bp
ATGGAGAGTGGCGATGAGAGTCCGGTGGTTCTAATTACGGGATGTTCTCAGGGAGGAATTGGTCACGCGCTGGCCCGTGAGTTCACTGAGAAGGGATGTCGAGTGGTGGCGACGAGTCGATCACGGAGTACGATGACGGATCTGGAGCAAGATTCGAGGTTATTCGTGAAGGAGCTTGATGTGCAATCGGACCAGAATGTGAGTAAGGTTTTGTCGGAGGTTATTGATAAGTTCGGTAAGATCGACGTTCTTGTTAATAACGCCGGAGTTCAGTGCGTTGGACCTCTGGCGGAGACTCCAATTTCCGCCATGGAAAACACATTCAACACCAATGTTTTTGGTTCCATGAGGATGACTCAAGCTGTTGTACCACACATGGTGTCTAAGAAAAAGGGAAAGATTGTCAACGTTGGAAGTATCACTGTTATGGCACCTGGTCCATGGGCTGGTGTCTATACAGCTACCAAAGCTGCTATTCATGCTCTTACCGATACTCTGAGGTTGGAGCTTCGTCCGTTTGGGATTGATGTCATCAATGTTGTCCCGGGAGGAATAAGAACAAACATAGCAAACTCAGCTGTGGCAACTTTCAACAAAATGCCTGAGCTGAAACTATACAAGCCTTATGAAGAAGCTATCAGAGAAAGGGCGTTTATATCACAGAGGATGAATCCAACTCCTGCAGAAACATTTGCCAGAGACACTGTAGCCGCAGTGCTGAAGAAGAATCCACCCGCTTGGTTCTCGTCAGGCAGGTATTCAACCCTCATGGCAGTCATGTATCATATGCCCTTATGGCTCAAAGATTTTTTCCAGAAGCAGGTTTTAATGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

279

Amino Acids

30.66

Weight (kDa)

9.3

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1776 PF08643 7 - 197 1.9e-09 Fungal family of unknown function (DUF1776)
adh_short PF00106 9 - 193 2e-53 short chain dehydrogenase
KR PF08659 10 - 166 2.8e-10 KR domain
Epimerase PF01370 10 - 146 3.8e-07 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 11 - 139 3.9e-06 GDP-mannose 4,6 dehydratase
adh_short_C2 PF13561 17 - 200 1.9e-36 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10050 AT5G65205
fragaria_vesca FvH4_1g21770 FvH4_1g21770
malus_domestica MD01G1022400.v1.1
prunus_persica Prupe.6G178200_v2.0.a1
pyrus_communis pycom01g05090
rosa_chinensis RchiOBHm_Chr2g0115641
rosa_laevigata RLG00000018200
rosa_multiflora Rmu_ssc0000197.1_g000085
rosa_roxburghii Rroxscaffold_2G00128030 Rroxscaffold_2G00128900
rosa_rugosa Rorug02G0199000
rosa_samantha Rh2AG256100 Rh2BG266900 Rh2CG261500 Rh2DG264400
rosa_wichuraiana Rw2G020050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 744, 811
AccB1I GGYRCC 1 cut(s) 430
AccB7I CCANNNNNTGG 1 cut(s) 446
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 290, 306, 711, 735
AclI AACGTT 1 cut(s) 408
AclWI GGATC 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 740
AdeI CACNNNGTG 1 cut(s) 379
AfaI GTAC 2 cut(s) 130, 369
AfiI CCNNNNNNNGG 2 cut(s) 446, 820
AgsI TTSAA 3 cut(s) 325, 592, 762
AjnI CCWGG 1 cut(s) 433
AluBI AGCT 8 cut(s) 175, 362, 461, 470, 508, 578, 607, 635
AluI AGCT 8 cut(s) 175, 362, 461, 470, 508, 578, 607, 635
Alw26I GTCTC 2 cut(s) 287, 693
AlwI GGATC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 544
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 470
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 4 cut(s) 73, 190, 281, 437
AsuC2I CCSGG 2 cut(s) 545, 546
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 3 cut(s) 190, 281, 437
BanI GGYRCC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 457
BciT130I CCWGG 1 cut(s) 435
BcnI CCSGG 2 cut(s) 545, 546
BcoDI GTCTC 2 cut(s) 287, 693
BfmI CTRYAG 2 cut(s) 681, 705
BfuAI ACCTGC 2 cut(s) 744, 811
BglI GCCNNNNNGGC 1 cut(s) 796
BisI GCNGC 2 cut(s) 471, 711
BlsI GCNGC 2 cut(s) 472, 712
Bme1390I CCNGG 3 cut(s) 435, 545, 546
Bme18I GGWCC 3 cut(s) 190, 281, 437
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 4 cut(s) 73, 190, 281, 437
BmiI GGNNCC 2 cut(s) 343, 432
BmrFI CCNGG 3 cut(s) 435, 545, 546
BplI GAGNNNNNCTC 2 cut(s) 340, 372
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 2 cut(s) 545, 546
BsaJI CCNNGG 3 cut(s) 309, 440, 544
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 446, 820
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 3 cut(s) 309, 440, 544
BseGI GGATG 4 cut(s) 47, 101, 357, 672
BseLI CCNNNNNNNGG 2 cut(s) 446, 820
BseMII CTCAG 5 cut(s) 62, 78, 488, 588, 594
BseXI GCAGC 1 cut(s) 457
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 430
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 3 cut(s) 23, 264, 545
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 446, 820
BsmAI GTCTC 2 cut(s) 287, 693
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 544
Bsp143I GATC 3 cut(s) 119, 139, 240
Bsp19I CCATGG 2 cut(s) 309, 440
BspACI CCGC 4 cut(s) 290, 306, 711, 735
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 5 cut(s) 61, 79, 489, 587, 595
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 343, 432
BspMAI CTGCAG 1 cut(s) 685
BspMI ACCTGC 2 cut(s) 744, 811
BspPI GGATC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 430
BssECI CCNNGG 3 cut(s) 309, 440, 544
BssMI GATC 3 cut(s) 119, 139, 240
BssT1I CCWWGG 2 cut(s) 309, 440
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 2 cut(s) 424, 706
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 6 cut(s) 48, 87, 384, 497, 574, 603
BstDSI CCRYGG 2 cut(s) 309, 440
BstF5I GGATG 4 cut(s) 47, 101, 357, 672
BstFNI CGCG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 122, 142, 243
BstMAI GTCTC 2 cut(s) 287, 693
BstMBI GATC 3 cut(s) 119, 139, 240
BstMWI GCNNNNNNNGC 5 cut(s) 181, 467, 479, 575, 796
BstNI CCWGG 1 cut(s) 435
BstSCI CCNGG 3 cut(s) 433, 543, 544
BstSFI CTRYAG 2 cut(s) 681, 705
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 457
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 738
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 2 cut(s) 309, 440
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 4 cut(s) 47, 101, 357, 672
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 5 cut(s) 84, 278, 420, 702, 720
BveI ACCTGC 2 cut(s) 744, 811
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 4 cut(s) 73, 190, 281, 437
Cfr9I CCCGGG 1 cut(s) 544
CsiI ACCWGGT 1 cut(s) 433
Csp6I GTAC 2 cut(s) 129, 368
CviAII CATG 7 cut(s) 310, 346, 376, 441, 479, 769, 778
CviQI GTAC 2 cut(s) 129, 368
DdeI CTNAG 6 cut(s) 48, 87, 384, 497, 574, 603
DpnI GATC 3 cut(s) 121, 141, 242
DpnII GATC 3 cut(s) 119, 139, 240
DraIII CACNNNGTG 1 cut(s) 379
EciI GGCGGA 2 cut(s) 295, 305
Eco130I CCWWGG 2 cut(s) 309, 440
Eco47I GGWCC 3 cut(s) 190, 281, 437
Eco57I CTGAAG 1 cut(s) 740
Eco88I CYCGRG 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 309, 440
ErhI CCWWGG 2 cut(s) 309, 440
FaeI CATG 7 cut(s) 313, 349, 379, 444, 482, 772, 781
FaqI GGGAC 1 cut(s) 527
FatI CATG 7 cut(s) 309, 345, 375, 440, 478, 768, 777
FauI CCCGC 1 cut(s) 742
FauNDI CATATG 1 cut(s) 786
Fnu4HI GCNGC 2 cut(s) 471, 711
FokI GGATG 4 cut(s) 54, 108, 364, 679
Fsp4HI GCNGC 2 cut(s) 471, 711
GlaI GCGC 1 cut(s) 69
GluI GCNGC 2 cut(s) 471, 711
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 1 cut(s) 74
HapII CCGG 3 cut(s) 23, 264, 545
HhaI GCGC 1 cut(s) 70
Hin1II CATG 7 cut(s) 313, 349, 379, 444, 482, 772, 781
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 7 cut(s) 19, 115, 152, 295, 355, 670, 727
HpaII CCGG 3 cut(s) 23, 264, 545
Hpy166II GTNNAC 2 cut(s) 84, 406
Hpy188I TCNGA 4 cut(s) 190, 217, 498, 641
Hpy188III TCNNGA 3 cut(s) 143, 166, 814
Hpy8I GTNNAC 2 cut(s) 84, 406
Hpy99I CGWCG 2 cut(s) 115, 248
HpyAV CCTTC 2 cut(s) 85, 163
HpyCH4III ACNGT 2 cut(s) 424, 706
HpyCH4IV ACGT 2 cut(s) 246, 408
HpyCH4V TGCA 2 cut(s) 184, 683
HpyF10VI GCNNNNNNNGC 5 cut(s) 181, 467, 479, 575, 796
HpyF3I CTNAG 6 cut(s) 48, 87, 384, 497, 574, 603
HpySE526I ACGT 2 cut(s) 246, 408
Hsp92II CATG 7 cut(s) 313, 349, 379, 444, 482, 772, 781
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 3 cut(s) 119, 139, 240
LmnI GCTCC 3 cut(s) 145, 172, 505
Lsp1109I GCAGC 1 cut(s) 457
MabI ACCWGGT 1 cut(s) 433
MaeII ACGT 2 cut(s) 246, 408
MaeIII GTNAC 1 cut(s) 62
MalI GATC 3 cut(s) 121, 141, 242
MboI GATC 3 cut(s) 119, 139, 240
MboII GAAGA 3 cut(s) 641, 733, 736
MflI RGATCY 1 cut(s) 139
MluCI AATT 3 cut(s) 33, 57, 300
MlyI GAGTC 4 cut(s) 28, 124, 289, 349
MmeI TCCRAC 5 cut(s) 195, 259, 391, 483, 698
MnlI CCTC 9 cut(s) 47, 150, 211, 294, 342, 492, 542, 657, 776
MseI TTAA 2 cut(s) 255, 827
MslI CAYNNNNRTG 2 cut(s) 350, 425
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 3 cut(s) 23, 264, 545
MspR9I CCNGG 3 cut(s) 435, 545, 546
MvaI CCWGG 1 cut(s) 435
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 5 cut(s) 181, 467, 479, 575, 796
NciI CCSGG 2 cut(s) 545, 546
NcoI CCATGG 2 cut(s) 309, 440
NdeI CATATG 1 cut(s) 786
NdeII GATC 3 cut(s) 119, 139, 240
NlaIII CATG 7 cut(s) 313, 349, 379, 444, 482, 772, 781
NlaIV GGNNCC 2 cut(s) 343, 432
NmuCI GTSAC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PfeI GAWTC 3 cut(s) 152, 670, 727
PflMI CCANNNNNTGG 1 cut(s) 446
PkrI GCNGC 2 cut(s) 472, 712
PleI GAGTC 4 cut(s) 27, 123, 289, 349
PpsI GAGTC 4 cut(s) 27, 123, 289, 349
Psp1406I AACGTT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 343, 432
PspPI GGNCC 4 cut(s) 73, 190, 281, 437
PstI CTGCAG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 2 cut(s) 130, 369
RsaNI GTAC 2 cut(s) 129, 368
RseI CAYNNNNRTG 2 cut(s) 350, 425
SaqAI TTAA 2 cut(s) 255, 827
SatI GCNGC 2 cut(s) 471, 711
Sau3AI GATC 3 cut(s) 119, 139, 240
Sau96I GGNCC 4 cut(s) 73, 190, 281, 437
SchI GAGTC 4 cut(s) 28, 124, 289, 349
ScrFI CCNGG 3 cut(s) 435, 545, 546
SexAI ACCWGGT 1 cut(s) 433
SfcI CTRYAG 2 cut(s) 681, 705
SinI GGWCC 3 cut(s) 190, 281, 437
SmaI CCCGGG 1 cut(s) 546
SmiMI CAYNNNNRTG 2 cut(s) 350, 425
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 3 cut(s) 33, 57, 300
SsiI CCGC 4 cut(s) 290, 306, 711, 735
StyD4I CCNGG 3 cut(s) 433, 543, 544
StyI CCWWGG 2 cut(s) 309, 440
TaaI ACNGT 2 cut(s) 424, 706
TaiI ACGT 2 cut(s) 249, 411
TaqI TCGA 4 cut(s) 100, 118, 155, 243
TasI AATT 3 cut(s) 33, 57, 300
TauI GCSGC 1 cut(s) 713
TfiI GAWTC 3 cut(s) 152, 670, 727
Tru1I TTAA 2 cut(s) 255, 827
Tru9I TTAA 2 cut(s) 255, 827
TscAI CASTG 5 cut(s) 91, 278, 427, 709, 720
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 470
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 3 cut(s) 467, 642, 683
TspGWI ACGGA 3 cut(s) 139, 152, 504
TspMI CCCGGG 1 cut(s) 544
TspRI CASTG 5 cut(s) 91, 278, 427, 709, 720
Van91I CCANNNNNTGG 1 cut(s) 446
VpaK11BI GGWCC 3 cut(s) 190, 281, 437
XmaI CCCGGG 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.