Rw2G020050

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013333
Physical Location & Seq
Reverse (-)
27129179 .. 27131648
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020050.1

Sequence Viewer

Length: 789 bp
ATGGAGTTCTACGGCCAACAAGTGGTTCTGATCACCGGCTGCTCGCAGGGTGGCATCGGCCACGCGCTGGCACGCGCCTTCGCCGACGAGGGCTGCCTGGTGGTGGCCACAGCCAGGTCTCTGAGCTCCATGACCTATCTTGAGGACGACCCAAGATTCTTCCTTCAAGAATTGGACGTGGTTTCCGAGGAGAGCGTGAACGAAGTGGTGTCTACAGTGGTGGAGAAGTACGGCAGAATCGATGTGGTGGTGAACAATGCTGGAGTTCAGTGCGTGGGTCCACTCGCTGAAGTTCCTCTCTCTGCTCTGCAACACACGTTTGACACCAACGTTTATGGAAAAGGGAAAGATTGTAAATGTTGGAAGTGTTTCAGTGCGTTGTCCCCTGGACCATGGTCTGGTGCTTACACAGCATCTAAAGCTGCTCTTCAAGCACTTAGTGATTCTTTAAGATTGGAACTCAAGCCCTTTGGGATCAATGTAATCACTGTTGTACCTGGAGCTATTAGGTCAAACATTGGAAATTCTGGTTTAGTTGGCTACAACAAGATGCCTGAATGGAAATTATATAAACCTTTTGAGGCAGCAATTCGTGCTAGAGTGACTCTCTCACAAGGACCCAAATCAACCCCTTCAGAGGAGTTTGCGAAGAAGACAGTATCTGCCATTCTGAAGAAGAATCCACCAGCTTGGTTCTCTTCCGGTCACCTCTCTGTCATATTTGCAATCTTGTATTATATGCCAATCGTCGTTAGGGATTTTGTCCTGAGGAAAGCAATGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

262

Amino Acids

28.49

Weight (kDa)

8.66

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 7 - 113 5.8e-22 short chain dehydrogenase
adh_short_C2 PF13561 16 - 113 1.8e-16 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 127 - 174 3.1e-09 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10050 AT5G65205
fragaria_vesca FvH4_1g21770 FvH4_1g21770
malus_domestica MD01G1022400.v1.1
prunus_persica Prupe.6G178200_v2.0.a1
pyrus_communis pycom01g05090
rosa_chinensis RchiOBHm_Chr2g0115641
rosa_laevigata RLG00000018200
rosa_multiflora Rmu_ssc0000197.1_g000085
rosa_roxburghii Rroxscaffold_2G00128030 Rroxscaffold_2G00128900
rosa_rugosa Rorug02G0199000
rosa_samantha Rh2AG256100 Rh2BG266900 Rh2CG261500 Rh2DG264400
rosa_wichuraiana Rw2G020050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 22, 67, 398
AccI GTMKAC 1 cut(s) 212
AccII CGCG 2 cut(s) 65, 75
AclI AACGTT 1 cut(s) 330
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 3 cut(s) 13, 58, 105
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 3 cut(s) 309, 618, 692
AdeI CACNNNGTG 1 cut(s) 440
AfaI GTAC 2 cut(s) 230, 495
AfiI CCNNNNNNNGG 6 cut(s) 22, 67, 103, 114, 398, 637
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 2 cut(s) 167, 431
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 4 cut(s) 96, 113, 385, 496
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 5 cut(s) 126, 422, 503, 689, 784
AluI AGCT 5 cut(s) 126, 422, 503, 689, 784
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 3 cut(s) 13, 58, 105
ApeKI GCWGC 4 cut(s) 39, 93, 422, 584
ApoI RAATTY 1 cut(s) 523
Asp700I GAANNNNTTC 1 cut(s) 368
AspLEI GCGC 2 cut(s) 67, 77
AspS9I GGNCC 3 cut(s) 278, 389, 617
AsuHPI GGTGA 3 cut(s) 25, 262, 698
AvaII GGWCC 3 cut(s) 278, 389, 617
AxyI CCTNAGG 1 cut(s) 767
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 659
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 4 cut(s) 26, 80, 409, 596
BceAI ACGGC 2 cut(s) 28, 247
BciT130I CCWGG 4 cut(s) 98, 115, 387, 498
BclI TGATCA 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 4 cut(s) 40, 94, 423, 585
BlsI GCNGC 4 cut(s) 41, 95, 424, 586
Bme1390I CCNGG 4 cut(s) 98, 115, 387, 498
Bme18I GGWCC 3 cut(s) 278, 389, 617
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 3 cut(s) 278, 389, 617
BmiI GGNNCC 2 cut(s) 279, 619
BmrFI CCNGG 4 cut(s) 98, 115, 387, 498
BmsI GCATC 3 cut(s) 63, 422, 540
BoxI GACNNNNGTC 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 659
BplI GAGNNNNNCTC 2 cut(s) 591, 623
BpmI CTGGAG 2 cut(s) 282, 519
BpuEI CTTGAG 2 cut(s) 161, 446
Bsa29I ATCGAT 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 186, 385, 392
BsaWI WCCGGW 1 cut(s) 701
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 67, 103, 114, 398, 637
Bse118I RCCGGY 1 cut(s) 35
Bse21I CCTNAGG 1 cut(s) 767
Bse3DI GCAATG 1 cut(s) 783
BseBI CCWGG 4 cut(s) 98, 115, 387, 498
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 3 cut(s) 186, 385, 392
BseLI CCNNNNNNNGG 6 cut(s) 22, 67, 103, 114, 398, 637
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 2 cut(s) 113, 758
BseRI GAGGAG 2 cut(s) 203, 653
BseXI GCAGC 4 cut(s) 26, 80, 409, 596
Bsh1236I CGCG 2 cut(s) 65, 75
BshFI GGCC 3 cut(s) 15, 60, 107
BshVI ATCGAT 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 2 cut(s) 36, 702
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 6 cut(s) 22, 67, 103, 114, 398, 637
BsmAI GTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 3 cut(s) 15, 60, 107
Bso31I GGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 2 cut(s) 30, 474
Bsp19I CCATGG 1 cut(s) 392
BspANI GGCC 3 cut(s) 15, 60, 107
BspCNI CTCAG 2 cut(s) 114, 759
BspDI ATCGAT 1 cut(s) 240
BspFNI CGCG 2 cut(s) 65, 75
BspLI GGNNCC 2 cut(s) 279, 619
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 432
BspTNI GGTCTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 783
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 186, 385, 392
BssMI GATC 2 cut(s) 30, 474
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 4 cut(s) 98, 115, 387, 498
Bst4CI ACNGT 3 cut(s) 217, 490, 658
Bst6I CTCTTC 2 cut(s) 432, 703
BstAPI GCANNNNNTGC 1 cut(s) 593
BstC8I GCNNGC 3 cut(s) 44, 69, 73
BstDEI CTNAG 3 cut(s) 122, 437, 767
BstDSI CCRYGG 1 cut(s) 392
BstEII GGTNACC 1 cut(s) 704
BstFNI CGCG 2 cut(s) 65, 75
BstHHI GCGC 2 cut(s) 67, 77
BstKTI GATC 2 cut(s) 33, 477
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 30, 474
BstMWI GCNNNNNNNGC 4 cut(s) 410, 419, 431, 593
BstNI CCWGG 4 cut(s) 98, 115, 387, 498
BstPAI GACNNNNGTC 1 cut(s) 394
BstPI GGTNACC 1 cut(s) 704
BstSCI CCNGG 4 cut(s) 96, 113, 385, 496
BstSFI CTRYAG 1 cut(s) 213
BstUI CGCG 2 cut(s) 65, 75
BstV1I GCAGC 4 cut(s) 26, 80, 409, 596
BstV2I GAAGAC 1 cut(s) 659
BstXI CCANNNNNNTGG 1 cut(s) 690
Bsu15I ATCGAT 1 cut(s) 240
Bsu36I CCTNAGG 1 cut(s) 767
BsuRI GGCC 3 cut(s) 15, 60, 107
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 392
BtrI CACGTC 1 cut(s) 178
BtsIMutI CAGTG 4 cut(s) 222, 275, 379, 486
Cac8I GCNNGC 3 cut(s) 44, 69, 73
CaiI CAGNNNCTG 1 cut(s) 662
CfoI GCGC 2 cut(s) 67, 77
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 3 cut(s) 278, 389, 617
ClaI ATCGAT 1 cut(s) 240
Csp6I GTAC 2 cut(s) 229, 494
CviAII CATG 2 cut(s) 130, 393
CviQI GTAC 2 cut(s) 229, 494
DdeI CTNAG 3 cut(s) 122, 437, 767
DpnI GATC 2 cut(s) 32, 476
DpnII GATC 2 cut(s) 30, 474
DraIII CACNNNGTG 1 cut(s) 440
EaeI YGGCCR 3 cut(s) 13, 58, 105
Eam1104I CTCTTC 2 cut(s) 432, 703
EarI CTCTTC 2 cut(s) 432, 703
Ecl136II GAGCTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 123
Eco47I GGWCC 3 cut(s) 278, 389, 617
Eco53kI GAGCTC 1 cut(s) 126
Eco57I CTGAAG 3 cut(s) 309, 618, 692
Eco81I CCTNAGG 1 cut(s) 767
Eco91I GGTNACC 1 cut(s) 704
EcoICRI GAGCTC 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 617
EcoO65I GGTNACC 1 cut(s) 704
EcoRII CCWGG 4 cut(s) 96, 113, 385, 496
EcoT14I CCWWGG 1 cut(s) 392
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 2 cut(s) 133, 396
FaiI YATR 8 cut(s) 131, 336, 394, 568, 570, 719, 738, 740
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 367
FatI CATG 2 cut(s) 129, 392
FbaI TGATCA 1 cut(s) 30
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 4 cut(s) 40, 94, 423, 585
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 4 cut(s) 40, 94, 423, 585
FspBI CTAG 1 cut(s) 597
GlaI GCGC 2 cut(s) 66, 76
GluI GCNGC 4 cut(s) 40, 94, 423, 585
GsuI CTGGAG 2 cut(s) 282, 519
HaeIII GGCC 3 cut(s) 15, 60, 107
HapII CCGG 2 cut(s) 36, 702
HhaI GCGC 2 cut(s) 67, 77
Hin1II CATG 2 cut(s) 133, 396
Hin6I GCGC 2 cut(s) 65, 75
HinP1I GCGC 2 cut(s) 65, 75
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 5 cut(s) 156, 237, 443, 604, 679
HpaII CCGG 2 cut(s) 36, 702
HphI GGTGA 3 cut(s) 25, 262, 698
Hpy166II GTNNAC 4 cut(s) 199, 213, 253, 281
Hpy188I TCNGA 5 cut(s) 30, 123, 187, 637, 672
Hpy188III TCNNGA 3 cut(s) 140, 167, 766
Hpy8I GTNNAC 4 cut(s) 199, 213, 253, 281
Hpy99I CGWCG 2 cut(s) 89, 752
HpyAV CCTTC 3 cut(s) 88, 173, 642
HpyCH4III ACNGT 3 cut(s) 217, 490, 658
HpyCH4IV ACGT 3 cut(s) 177, 317, 330
HpyCH4V TGCA 2 cut(s) 310, 725
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 419, 431, 593
HpyF3I CTNAG 3 cut(s) 122, 437, 767
HpySE526I ACGT 3 cut(s) 177, 317, 330
Hsp92II CATG 2 cut(s) 133, 396
HspAI GCGC 2 cut(s) 65, 75
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 2 cut(s) 30, 474
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 2 cut(s) 131, 500
Lsp1109I GCAGC 4 cut(s) 26, 80, 409, 596
LweI GCATC 3 cut(s) 63, 422, 540
MaeI CTAG 1 cut(s) 597
MaeII ACGT 3 cut(s) 177, 317, 330
MaeIII GTNAC 2 cut(s) 601, 704
MalI GATC 2 cut(s) 32, 476
MboI GATC 2 cut(s) 30, 474
MboII GAAGA 7 cut(s) 151, 419, 661, 664, 685, 688, 690
MhlI GDGCHC 1 cut(s) 128
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 4 cut(s) 170, 523, 563, 588
MluNI TGGCCA 1 cut(s) 107
MlyI GAGTC 1 cut(s) 598
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 8 cut(s) 82, 136, 181, 306, 574, 631, 719, 762
Mox20I TGGCCA 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 368
MscI TGGCCA 1 cut(s) 107
MseI TTAA 1 cut(s) 449
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 2 cut(s) 36, 702
MspR9I CCNGG 4 cut(s) 98, 115, 387, 498
MvaI CCWGG 4 cut(s) 98, 115, 387, 498
MvnI CGCG 2 cut(s) 65, 75
MwoI GCNNNNNNNGC 4 cut(s) 410, 419, 431, 593
NcoI CCATGG 1 cut(s) 392
NdeII GATC 2 cut(s) 30, 474
NlaIII CATG 2 cut(s) 133, 396
NlaIV GGNNCC 2 cut(s) 279, 619
NmuCI GTSAC 2 cut(s) 601, 704
PciSI GCTCTTC 1 cut(s) 432
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 237
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 4 cut(s) 156, 237, 443, 679
PflMI CCANNNNNTGG 3 cut(s) 22, 67, 398
PkrI GCNGC 4 cut(s) 41, 95, 424, 586
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PpuMI RGGWCCY 1 cut(s) 617
PshAI GACNNNNGTC 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 128
Psp1406I AACGTT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 617
Psp6I CCWGG 4 cut(s) 96, 113, 385, 496
PspEI GGTNACC 1 cut(s) 704
PspGI CCWGG 4 cut(s) 96, 113, 385, 496
PspN4I GGNNCC 2 cut(s) 279, 619
PspPI GGNCC 3 cut(s) 278, 389, 617
PspPPI RGGWCCY 1 cut(s) 617
PstNI CAGNNNCTG 1 cut(s) 662
RsaI GTAC 2 cut(s) 230, 495
RsaNI GTAC 2 cut(s) 229, 494
SacI GAGCTC 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 4 cut(s) 40, 94, 423, 585
Sau3AI GATC 2 cut(s) 30, 474
Sau96I GGNCC 3 cut(s) 278, 389, 617
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 4 cut(s) 98, 115, 387, 498
SduI GDGCHC 1 cut(s) 128
SfaNI GCATC 3 cut(s) 63, 422, 540
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 3 cut(s) 278, 389, 617
SmlI CTYRAG 2 cut(s) 140, 461
SmoI CTYRAG 2 cut(s) 140, 461
Sse9I AATT 4 cut(s) 170, 523, 563, 588
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 4 cut(s) 96, 113, 385, 496
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 3 cut(s) 217, 490, 658
TaiI ACGT 3 cut(s) 180, 320, 333
TaqI TCGA 1 cut(s) 240
TasI AATT 4 cut(s) 170, 523, 563, 588
TfiI GAWTC 4 cut(s) 156, 237, 443, 679
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TscAI CASTG 4 cut(s) 222, 275, 379, 493
TseFI GTSAC 2 cut(s) 601, 704
TseI GCWGC 4 cut(s) 39, 93, 422, 584
Tsp45I GTSAC 2 cut(s) 601, 704
TspRI CASTG 4 cut(s) 222, 275, 379, 493
Van91I CCANNNNNTGG 3 cut(s) 22, 67, 398
VpaK11BI GGWCC 3 cut(s) 278, 389, 617
XapI RAATTY 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.