Rh2BG266900

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013333
Physical Location & Seq
Reverse (-)
28664154 .. 28667875
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG266900.1

Sequence Viewer

Length: 900 bp
ATGGTGTTCTCCTCAACTACCTCTAACCGTGACAATACAAAACCGAAGTTAAATGACAAAACCCAGATGGAGTTCTACGGCCAACAAGTGGTTCTGATCACTGGCTGCTCGCAGGGTGGCATCGGCCACGCGCTGGCACGCGCCTTCGCCGACGAGGGCTGCCTGGTGGTGGCCACAGCCAGGTCTCTGAACTCCATGGCCTATCTTGAGGAGGACCCAAGATTCTTCCTTCAAGAATTGGACGTGGTTTCCGAGGAGAGCGTGAACGAAGTGGTGTCTACAGTGGTGGAGAAGTACGGCAGAATCGATGTGGTGGTGAACAATGCTGGAGTTCAGTGCGTGGGTCCACTCGCTGAAGTTCCTCTCTCTGCTCTGCAACACACGTTTGACACCAACGTTTATGGTCCCATGAGGTTGATACAAGCTGTTATCCCTCACATGGTGTCAAGGAGAAAGGGAAAGATTGTAAATGTTGGAAGTGTTACTGCATTGTCCCCTGGACCATGGTCTGGTTCTTACACAGCATCTAAAGCTGCTCTTCAAGCACTTAGTGATTCTTTAAGATTGGAACTCAAGCCCTTTGGGATCAATGTAATCACTGTTGTACCTGGAGCTATTAGGTCAAACATTGGAAATTCTGGTTTAGTTGGCTACAACAAGATGCCTGAATGGAAATTATATAAACCTTTTGAGGCAGCAATTCGTGCTAGAGTGACTCTCTCACAAGGACCCAAATCAACCCCTTCAGAGGAGTTTGCGAAGAAGACAGTATCTGCCATTCTGAAGAAGAATCCACCAGCTTGGTTCTCTTCCGGTCACCTCTCTGTCATATTTGCAATCTTGTATTATATGCCAATCGTCGTTAGGGATTTTGTCCTGAGGAAAGCAATGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

299

Amino Acids

32.57

Weight (kDa)

9.35

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 29 - 210 5.3e-51 short chain dehydrogenase
KR PF08659 31 - 188 3.8e-08 KR domain
Epimerase PF01370 31 - 165 5.7e-07 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 38 - 221 5.4e-36 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10050 AT5G65205
fragaria_vesca FvH4_1g21770 FvH4_1g21770
malus_domestica MD01G1022400.v1.1
prunus_persica Prupe.6G178200_v2.0.a1
pyrus_communis pycom01g05090
rosa_chinensis RchiOBHm_Chr2g0115641
rosa_laevigata RLG00000018200
rosa_multiflora Rmu_ssc0000197.1_g000085
rosa_roxburghii Rroxscaffold_2G00128030 Rroxscaffold_2G00128900
rosa_rugosa Rorug02G0199000
rosa_samantha Rh2AG256100 Rh2BG266900 Rh2CG261500 Rh2DG264400
rosa_wichuraiana Rw2G020050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 88, 133, 509
AccI GTMKAC 1 cut(s) 278
AccII CGCG 2 cut(s) 131, 141
AclI AACGTT 1 cut(s) 396
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 3 cut(s) 79, 124, 171
AcsI RAATTY 1 cut(s) 634
AcuI CTGAAG 3 cut(s) 375, 729, 803
AdeI CACNNNGTG 2 cut(s) 442, 551
AfaI GTAC 2 cut(s) 296, 606
AfiI CCNNNNNNNGG 7 cut(s) 88, 133, 169, 180, 439, 509, 748
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 2 cut(s) 233, 542
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 4 cut(s) 162, 179, 496, 607
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 5 cut(s) 425, 533, 614, 800, 895
AluI AGCT 5 cut(s) 425, 533, 614, 800, 895
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 593
AlwNI CAGNNNCTG 1 cut(s) 773
AoxI GGCC 4 cut(s) 79, 124, 171, 198
ApeKI GCWGC 4 cut(s) 105, 159, 533, 695
ApoI RAATTY 1 cut(s) 634
AspLEI GCGC 2 cut(s) 133, 143
AspS9I GGNCC 5 cut(s) 214, 344, 404, 500, 728
AsuHPI GGTGA 2 cut(s) 328, 809
AvaII GGWCC 5 cut(s) 214, 344, 404, 500, 728
AxyI CCTNAGG 1 cut(s) 878
BaeI ACNNNNGTAYC 2 cut(s) 588, 621
BalI TGGCCA 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 770
BbvI GCAGC 4 cut(s) 92, 146, 520, 707
BccI CCATC 1 cut(s) 61
BceAI ACGGC 2 cut(s) 94, 313
BciT130I CCWGG 4 cut(s) 164, 181, 498, 609
BclI TGATCA 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 1 cut(s) 279
BisI GCNGC 4 cut(s) 106, 160, 534, 696
BlsI GCNGC 4 cut(s) 107, 161, 535, 697
Bme1390I CCNGG 4 cut(s) 164, 181, 498, 609
Bme18I GGWCC 5 cut(s) 214, 344, 404, 500, 728
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 5 cut(s) 214, 344, 404, 500, 728
BmiI GGNNCC 4 cut(s) 216, 345, 406, 730
BmrFI CCNGG 4 cut(s) 164, 181, 498, 609
BmsI GCATC 3 cut(s) 129, 533, 651
BoxI GACNNNNGTC 1 cut(s) 505
BpiI GAAGAC 1 cut(s) 770
BplI GAGNNNNNCTC 2 cut(s) 702, 734
BpmI CTGGAG 2 cut(s) 348, 630
BpuEI CTTGAG 2 cut(s) 227, 557
Bsa29I ATCGAT 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 195, 252, 496, 503
BsaWI WCCGGW 1 cut(s) 812
Bsc4I CCNNNNNNNGG 7 cut(s) 88, 133, 169, 180, 439, 509, 748
Bse1I ACTGG 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 878
Bse3DI GCAATG 1 cut(s) 894
BseBI CCWGG 4 cut(s) 164, 181, 498, 609
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 4 cut(s) 195, 252, 496, 503
BseLI CCNNNNNNNGG 7 cut(s) 88, 133, 169, 180, 439, 509, 748
BseMI GCAATG 1 cut(s) 894
BseMII CTCAG 1 cut(s) 869
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 3 cut(s) 224, 269, 764
BseXI GCAGC 4 cut(s) 92, 146, 520, 707
Bsh1236I CGCG 2 cut(s) 131, 141
BshFI GGCC 4 cut(s) 81, 126, 173, 200
BshVI ATCGAT 1 cut(s) 306
BsiSI CCGG 1 cut(s) 813
BslFI GGGAC 2 cut(s) 390, 478
BslI CCNNNNNNNGG 7 cut(s) 88, 133, 169, 180, 439, 509, 748
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 2 cut(s) 390, 478
BsnI GGCC 4 cut(s) 81, 126, 173, 200
Bso31I GGTCTC 1 cut(s) 189
Bsp143I GATC 2 cut(s) 96, 585
Bsp19I CCATGG 2 cut(s) 195, 503
BspANI GGCC 4 cut(s) 81, 126, 173, 200
BspCNI CTCAG 1 cut(s) 870
BspDI ATCGAT 1 cut(s) 306
BspFNI CGCG 2 cut(s) 131, 141
BspLI GGNNCC 4 cut(s) 216, 345, 406, 730
BspPI GGATC 1 cut(s) 593
BspQI GCTCTTC 1 cut(s) 543
BspTNI GGTCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 894
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 4 cut(s) 195, 252, 496, 503
BssMI GATC 2 cut(s) 96, 585
BssT1I CCWWGG 2 cut(s) 195, 503
Bst2UI CCWGG 4 cut(s) 164, 181, 498, 609
Bst4CI ACNGT 4 cut(s) 29, 283, 601, 769
Bst6I CTCTTC 2 cut(s) 543, 814
BstAPI GCANNNNNTGC 1 cut(s) 704
BstC8I GCNNGC 3 cut(s) 110, 135, 139
BstDEI CTNAG 2 cut(s) 548, 878
BstDSI CCRYGG 2 cut(s) 195, 503
BstEII GGTNACC 1 cut(s) 815
BstFNI CGCG 2 cut(s) 131, 141
BstHHI GCGC 2 cut(s) 133, 143
BstKTI GATC 2 cut(s) 99, 588
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 96, 585
BstMWI GCNNNNNNNGC 3 cut(s) 530, 542, 704
BstNI CCWGG 4 cut(s) 164, 181, 498, 609
BstPAI GACNNNNGTC 1 cut(s) 505
BstPI GGTNACC 1 cut(s) 815
BstSCI CCNGG 4 cut(s) 162, 179, 496, 607
BstSFI CTRYAG 1 cut(s) 279
BstUI CGCG 2 cut(s) 131, 141
BstV1I GCAGC 4 cut(s) 92, 146, 520, 707
BstV2I GAAGAC 1 cut(s) 770
BstXI CCANNNNNNTGG 1 cut(s) 801
Bsu15I ATCGAT 1 cut(s) 306
Bsu36I CCTNAGG 1 cut(s) 878
BsuRI GGCC 4 cut(s) 81, 126, 173, 200
BsuTUI ATCGAT 1 cut(s) 306
BtgI CCRYGG 2 cut(s) 195, 503
BtrI CACGTC 1 cut(s) 244
BtsIMutI CAGTG 4 cut(s) 99, 288, 341, 597
Cac8I GCNNGC 3 cut(s) 110, 135, 139
CaiI CAGNNNCTG 1 cut(s) 773
CfoI GCGC 2 cut(s) 133, 143
Cfr13I GGNCC 5 cut(s) 214, 344, 404, 500, 728
ClaI ATCGAT 1 cut(s) 306
Csp6I GTAC 2 cut(s) 295, 605
CviAII CATG 4 cut(s) 196, 409, 439, 504
CviQI GTAC 2 cut(s) 295, 605
DdeI CTNAG 2 cut(s) 548, 878
DpnI GATC 2 cut(s) 98, 587
DpnII GATC 2 cut(s) 96, 585
DraIII CACNNNGTG 2 cut(s) 442, 551
EaeI YGGCCR 3 cut(s) 79, 124, 171
Eam1104I CTCTTC 2 cut(s) 543, 814
EarI CTCTTC 2 cut(s) 543, 814
Eco130I CCWWGG 2 cut(s) 195, 503
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 5 cut(s) 214, 344, 404, 500, 728
Eco57I CTGAAG 3 cut(s) 375, 729, 803
Eco81I CCTNAGG 1 cut(s) 878
Eco91I GGTNACC 1 cut(s) 815
EcoO109I RGGNCCY 2 cut(s) 214, 728
EcoO65I GGTNACC 1 cut(s) 815
EcoRII CCWGG 4 cut(s) 162, 179, 496, 607
EcoT14I CCWWGG 2 cut(s) 195, 503
ErhI CCWWGG 2 cut(s) 195, 503
FaeI CATG 4 cut(s) 199, 412, 442, 507
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 2 cut(s) 390, 478
FatI CATG 4 cut(s) 195, 408, 438, 503
FbaI TGATCA 1 cut(s) 96
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 4 cut(s) 106, 160, 534, 696
Fsp4HI GCNGC 4 cut(s) 106, 160, 534, 696
FspBI CTAG 1 cut(s) 708
GlaI GCGC 2 cut(s) 132, 142
GluI GCNGC 4 cut(s) 106, 160, 534, 696
GsuI CTGGAG 2 cut(s) 348, 630
HaeIII GGCC 4 cut(s) 81, 126, 173, 200
HapII CCGG 1 cut(s) 813
HhaI GCGC 2 cut(s) 133, 143
Hin1II CATG 4 cut(s) 199, 412, 442, 507
Hin6I GCGC 2 cut(s) 131, 141
HinP1I GCGC 2 cut(s) 131, 141
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 5 cut(s) 222, 303, 554, 715, 790
HpaII CCGG 1 cut(s) 813
HphI GGTGA 2 cut(s) 328, 809
Hpy166II GTNNAC 4 cut(s) 265, 279, 319, 347
Hpy188I TCNGA 5 cut(s) 96, 189, 253, 748, 783
Hpy188III TCNNGA 3 cut(s) 206, 233, 877
Hpy8I GTNNAC 4 cut(s) 265, 279, 319, 347
Hpy99I CGWCG 2 cut(s) 155, 863
HpyAV CCTTC 3 cut(s) 154, 239, 753
HpyCH4III ACNGT 4 cut(s) 29, 283, 601, 769
HpyCH4IV ACGT 3 cut(s) 243, 383, 396
HpyCH4V TGCA 3 cut(s) 376, 488, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 530, 542, 704
HpyF3I CTNAG 2 cut(s) 548, 878
HpySE526I ACGT 3 cut(s) 243, 383, 396
Hsp92II CATG 4 cut(s) 199, 412, 442, 507
HspAI GCGC 2 cut(s) 131, 141
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 2 cut(s) 96, 585
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 1 cut(s) 611
Lsp1109I GCAGC 4 cut(s) 92, 146, 520, 707
LweI GCATC 3 cut(s) 129, 533, 651
MaeI CTAG 1 cut(s) 708
MaeII ACGT 3 cut(s) 243, 383, 396
MaeIII GTNAC 4 cut(s) 29, 481, 712, 815
MalI GATC 2 cut(s) 98, 587
MboI GATC 2 cut(s) 96, 585
MboII GAAGA 7 cut(s) 217, 530, 772, 775, 796, 799, 801
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 4 cut(s) 236, 634, 674, 699
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 1 cut(s) 454
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
MseI TTAA 2 cut(s) 50, 560
Msp20I TGGCCA 1 cut(s) 173
MspI CCGG 1 cut(s) 813
MspR9I CCNGG 4 cut(s) 164, 181, 498, 609
MvaI CCWGG 4 cut(s) 164, 181, 498, 609
MvnI CGCG 2 cut(s) 131, 141
MwoI GCNNNNNNNGC 3 cut(s) 530, 542, 704
NcoI CCATGG 2 cut(s) 195, 503
NdeII GATC 2 cut(s) 96, 585
NlaIII CATG 4 cut(s) 199, 412, 442, 507
NlaIV GGNNCC 4 cut(s) 216, 345, 406, 730
NmuCI GTSAC 3 cut(s) 29, 712, 815
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 2 cut(s) 249, 303
PfeI GAWTC 4 cut(s) 222, 303, 554, 790
PflMI CCANNNNNTGG 3 cut(s) 88, 133, 509
PkrI GCNGC 4 cut(s) 107, 161, 535, 697
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PpuMI RGGWCCY 2 cut(s) 214, 728
PshAI GACNNNNGTC 1 cut(s) 505
Psp1406I AACGTT 1 cut(s) 396
Psp5II RGGWCCY 2 cut(s) 214, 728
Psp6I CCWGG 4 cut(s) 162, 179, 496, 607
PspEI GGTNACC 1 cut(s) 815
PspGI CCWGG 4 cut(s) 162, 179, 496, 607
PspN4I GGNNCC 4 cut(s) 216, 345, 406, 730
PspPI GGNCC 5 cut(s) 214, 344, 404, 500, 728
PspPPI RGGWCCY 2 cut(s) 214, 728
PstNI CAGNNNCTG 1 cut(s) 773
RsaI GTAC 2 cut(s) 296, 606
RsaNI GTAC 2 cut(s) 295, 605
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 2 cut(s) 50, 560
SatI GCNGC 4 cut(s) 106, 160, 534, 696
Sau3AI GATC 2 cut(s) 96, 585
Sau96I GGNCC 5 cut(s) 214, 344, 404, 500, 728
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 4 cut(s) 164, 181, 498, 609
SfaNI GCATC 3 cut(s) 129, 533, 651
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 5 cut(s) 214, 344, 404, 500, 728
SmlI CTYRAG 2 cut(s) 206, 572
SmoI CTYRAG 2 cut(s) 206, 572
Sse9I AATT 4 cut(s) 236, 634, 674, 699
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 4 cut(s) 162, 179, 496, 607
StyI CCWWGG 2 cut(s) 195, 503
TaaI ACNGT 4 cut(s) 29, 283, 601, 769
TaiI ACGT 3 cut(s) 246, 386, 399
TaqI TCGA 1 cut(s) 306
TasI AATT 4 cut(s) 236, 634, 674, 699
TfiI GAWTC 4 cut(s) 222, 303, 554, 790
Tru1I TTAA 2 cut(s) 50, 560
Tru9I TTAA 2 cut(s) 50, 560
TscAI CASTG 4 cut(s) 106, 288, 341, 604
TseFI GTSAC 3 cut(s) 29, 712, 815
TseI GCWGC 4 cut(s) 105, 159, 533, 695
Tsp45I GTSAC 3 cut(s) 29, 712, 815
TspRI CASTG 4 cut(s) 106, 288, 341, 604
Van91I CCANNNNNTGG 3 cut(s) 88, 133, 509
VpaK11BI GGWCC 5 cut(s) 214, 344, 404, 500, 728
XapI RAATTY 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.