FvH4_1g21770

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013333
Physical Location & Seq
Reverse (-)
13711344 .. 13714107
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21770.t1

Sequence Viewer

Length: 834 bp
ATGGAGTTCTACGGCCAGAAAGTGGTTCTGATCACCGGCTGCTCGCAGGGAGGCATCGGCCACGCGCTGGCACGCGCGTTCGCCGACGAGGGCTGCCTGGTGGTGGCCACAACCAGGTCTCTGAGCTCCATGGCTGATCTTGAGGACGACCCAAGATTCTTCCTTCAAGAACTGGACGTGGTTTCCGAGGAGAGCGTGAAGCAAGTGGTGTCCACAGTGTTGGAGAAGTACGGCCGAGTCGATGTGGTGGTGAACAATGCTGGAGTTCCGTGCGTGGGCCCACTCGCTGAAGTTCCTCTATCTGCCCTGCAACACACATTTGACACCAACGTTTACGGTTCCATGAGGTTGATACAAACTGTTGTACCTCACATGGCATCGAGAAAACAAGGAAAGATTGTTAATGTTGGAAGTGTTACTGCTTTATCACCTGGACCATGGTCTGGTGCTTACACAGCATCGAAAGCTGCTCTTCAAGCACTTAGTGATTCTTTAAGATTGGAACTCAAGCCCTTTGGGATTGATGTAATCACTGTTGTACCTGGAGCTATTAAGTCAAACATAGGAAATTCTAGTTTAGCTGGCTACAACAAGATGCCTGAATGGAAATTATACAAACCTTTTGATGCTGCAATCCGTGATAGAGCAACTCGATCACAAGGACCCAGATCAACTCCTTCAGAGGAGTTTGCTAAGAAGACGGTATCTGCGATTCTAAAGAAGAATCCACCTGCTTGGTTCTCCATTGGTTATCTCTCTACTATTTTTGCAATCTTGTATTACATGCCAATCTCTGTTAGGGATTTTGTCATGAGGAAAGTAATGAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

278

Amino Acids

30.07

Weight (kDa)

9.15

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 7 - 192 8.4e-51 short chain dehydrogenase
KR PF08659 9 - 166 4.8e-09 KR domain
Epimerase PF01370 9 - 142 2.8e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 16 - 199 1.6e-35 Enoyl-(Acyl carrier protein) reductase
DUF1776 PF08643 92 - 260 7.1e-07 Fungal family of unknown function (DUF1776)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10050 AT5G65205
fragaria_vesca FvH4_1g21770 FvH4_1g21770
malus_domestica MD01G1022400.v1.1
prunus_persica Prupe.6G178200_v2.0.a1
pyrus_communis pycom01g05090
rosa_chinensis RchiOBHm_Chr2g0115641
rosa_laevigata RLG00000018200
rosa_multiflora Rmu_ssc0000197.1_g000085
rosa_roxburghii Rroxscaffold_2G00128030 Rroxscaffold_2G00128900
rosa_rugosa Rorug02G0199000
rosa_samantha Rh2AG256100 Rh2BG266900 Rh2CG261500 Rh2DG264400
rosa_wichuraiana Rw2G020050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 739
Acc36I ACCTGC 1 cut(s) 739
AccB7I CCANNNNNTGG 3 cut(s) 22, 67, 443
AccII CGCG 3 cut(s) 65, 75, 77
AclI AACGTT 1 cut(s) 330
AcoI YGGCCR 4 cut(s) 13, 58, 105, 232
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 2 cut(s) 309, 663
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 3 cut(s) 230, 366, 540
AfiI CCNNNNNNNGG 6 cut(s) 22, 67, 103, 114, 275, 443
AgsI TTSAA 2 cut(s) 167, 476
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 4 cut(s) 96, 113, 430, 541
AluBI AGCT 5 cut(s) 126, 467, 548, 581, 829
AluI AGCT 5 cut(s) 126, 467, 548, 581, 829
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 123
AoxI GGCC 5 cut(s) 13, 58, 105, 232, 277
ApaI GGGCCC 1 cut(s) 281
ApeKI GCWGC 4 cut(s) 39, 93, 467, 629
ApoI RAATTY 1 cut(s) 568
AspLEI GCGC 2 cut(s) 67, 77
AspS9I GGNCC 4 cut(s) 277, 278, 434, 662
AsuHPI GGTGA 3 cut(s) 25, 262, 420
AvaII GGWCC 2 cut(s) 434, 662
BaeGI GKGCMC 1 cut(s) 281
BaeI ACNNNNGTAYC 4 cut(s) 348, 381, 522, 555
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 2 cut(s) 128, 281
BbsI GAAGAC 1 cut(s) 704
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 4 cut(s) 26, 80, 454, 616
BceAI ACGGC 2 cut(s) 28, 247
BciT130I CCWGG 4 cut(s) 98, 115, 432, 543
BclI TGATCA 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 573
BfuAI ACCTGC 1 cut(s) 739
BisI GCNGC 4 cut(s) 40, 94, 468, 630
BlsI GCNGC 4 cut(s) 41, 95, 469, 631
Bme1390I CCNGG 4 cut(s) 98, 115, 432, 543
Bme18I GGWCC 2 cut(s) 434, 662
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 4 cut(s) 277, 278, 434, 662
BmiI GGNNCC 3 cut(s) 279, 340, 664
BmrFI CCNGG 4 cut(s) 98, 115, 432, 543
BmsI GCATC 5 cut(s) 63, 386, 467, 585, 616
BoxI GACNNNNGTC 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 704
BpmI CTGGAG 2 cut(s) 282, 564
BpuEI CTTGAG 2 cut(s) 161, 491
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 129, 186, 437
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 67, 103, 114, 275, 443
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 177
BseBI CCWGG 4 cut(s) 98, 115, 432, 543
BseDI CCNNGG 3 cut(s) 129, 186, 437
BseLI CCNNNNNNNGG 6 cut(s) 22, 67, 103, 114, 275, 443
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 2 cut(s) 203, 698
BseSI GKGCMC 1 cut(s) 281
BseX3I CGGCCG 1 cut(s) 232
BseXI GCAGC 4 cut(s) 26, 80, 454, 616
Bsh1236I CGCG 3 cut(s) 65, 75, 77
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 5 cut(s) 15, 60, 107, 234, 279
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 6 cut(s) 22, 67, 103, 114, 275, 443
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 5 cut(s) 15, 60, 107, 234, 279
Bso31I GGTCTC 1 cut(s) 123
Bsp120I GGGCCC 1 cut(s) 277
Bsp1286I GDGCHC 2 cut(s) 128, 281
Bsp143I GATC 4 cut(s) 30, 136, 653, 668
Bsp19I CCATGG 2 cut(s) 129, 437
BspANI GGCC 5 cut(s) 15, 60, 107, 234, 279
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 3 cut(s) 65, 75, 77
BspHI TCATGA 1 cut(s) 810
BspLI GGNNCC 3 cut(s) 279, 340, 664
BspMI ACCTGC 1 cut(s) 739
BspQI GCTCTTC 1 cut(s) 477
BspTNI GGTCTC 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 129, 186, 437
BssMI GATC 4 cut(s) 30, 136, 653, 668
BssT1I CCWWGG 2 cut(s) 129, 437
Bst2UI CCWGG 4 cut(s) 98, 115, 432, 543
Bst4CI ACNGT 5 cut(s) 217, 338, 361, 535, 703
Bst6I CTCTTC 1 cut(s) 477
BstC8I GCNNGC 4 cut(s) 44, 69, 73, 583
BstDEI CTNAG 3 cut(s) 122, 482, 693
BstDSI CCRYGG 2 cut(s) 129, 437
BstFNI CGCG 3 cut(s) 65, 75, 77
BstHHI GCGC 2 cut(s) 67, 77
BstKTI GATC 4 cut(s) 33, 139, 656, 671
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 4 cut(s) 30, 136, 653, 668
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 3 cut(s) 455, 464, 476
BstNI CCWGG 4 cut(s) 98, 115, 432, 543
BstNSI RCATGY 1 cut(s) 787
BstPAI GACNNNNGTC 1 cut(s) 439
BstSCI CCNGG 4 cut(s) 96, 113, 430, 541
BstSLI GKGCMC 1 cut(s) 281
BstUI CGCG 3 cut(s) 65, 75, 77
BstV1I GCAGC 4 cut(s) 26, 80, 454, 616
BstV2I GAAGAC 1 cut(s) 704
BstXI CCANNNNNNTGG 2 cut(s) 220, 735
BstZI CGGCCG 1 cut(s) 232
BsuRI GGCC 5 cut(s) 15, 60, 107, 234, 279
BtgI CCRYGG 2 cut(s) 129, 437
BtrI CACGTC 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 222, 531
BveI ACCTGC 1 cut(s) 739
Cac8I GCNNGC 4 cut(s) 44, 69, 73, 583
CciI TCATGA 1 cut(s) 810
CfoI GCGC 2 cut(s) 67, 77
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 4 cut(s) 277, 278, 434, 662
CsiI ACCWGGT 1 cut(s) 113
Csp6I GTAC 3 cut(s) 229, 365, 539
CviAII CATG 6 cut(s) 130, 343, 373, 438, 784, 811
CviQI GTAC 3 cut(s) 229, 365, 539
DdeI CTNAG 3 cut(s) 122, 482, 693
DpnI GATC 4 cut(s) 32, 138, 655, 670
DpnII GATC 4 cut(s) 30, 136, 653, 668
DraIII CACNNNGTG 1 cut(s) 485
EaeI YGGCCR 4 cut(s) 13, 58, 105, 232
EagI CGGCCG 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Ecl136II GAGCTC 1 cut(s) 126
EclXI CGGCCG 1 cut(s) 232
Eco130I CCWWGG 2 cut(s) 129, 437
Eco24I GRGCYC 2 cut(s) 128, 281
Eco31I GGTCTC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 434, 662
Eco52I CGGCCG 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 309, 663
EcoICRI GAGCTC 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 662
EcoRII CCWGG 4 cut(s) 96, 113, 430, 541
EcoT14I CCWWGG 2 cut(s) 129, 437
EcoT38I GRGCYC 2 cut(s) 128, 281
ErhI CCWWGG 2 cut(s) 129, 437
FaeI CATG 6 cut(s) 133, 346, 376, 441, 787, 814
FaiI YATR 8 cut(s) 131, 344, 374, 439, 563, 613, 785, 812
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FatI CATG 6 cut(s) 129, 342, 372, 437, 783, 810
FbaI TGATCA 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 40, 94, 468, 630
FriOI GRGCYC 2 cut(s) 128, 281
Fsp4HI GCNGC 4 cut(s) 40, 94, 468, 630
FspBI CTAG 1 cut(s) 573
GlaI GCGC 2 cut(s) 66, 76
GluI GCNGC 4 cut(s) 40, 94, 468, 630
GsuI CTGGAG 2 cut(s) 282, 564
HaeIII GGCC 5 cut(s) 15, 60, 107, 234, 279
HapII CCGG 1 cut(s) 36
HhaI GCGC 2 cut(s) 67, 77
Hin1II CATG 6 cut(s) 133, 346, 376, 441, 787, 814
Hin6I GCGC 2 cut(s) 65, 75
HinP1I GCGC 2 cut(s) 65, 75
HinfI GANTC 5 cut(s) 156, 237, 488, 712, 724
HpaII CCGG 1 cut(s) 36
HphI GGTGA 3 cut(s) 25, 262, 420
Hpy166II GTNNAC 3 cut(s) 213, 253, 334
Hpy188I TCNGA 5 cut(s) 30, 123, 187, 682, 833
Hpy188III TCNNGA 4 cut(s) 140, 167, 381, 811
Hpy8I GTNNAC 3 cut(s) 213, 253, 334
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 173, 687
HpyCH4III ACNGT 5 cut(s) 217, 338, 361, 535, 703
HpyCH4IV ACGT 2 cut(s) 177, 330
HpyCH4V TGCA 3 cut(s) 310, 632, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 464, 476
HpyF3I CTNAG 3 cut(s) 122, 482, 693
HpySE526I ACGT 2 cut(s) 177, 330
Hsp92II CATG 6 cut(s) 133, 346, 376, 441, 787, 814
HspAI GCGC 2 cut(s) 65, 75
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 4 cut(s) 30, 136, 653, 668
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 2 cut(s) 131, 545
Lsp1109I GCAGC 4 cut(s) 26, 80, 454, 616
LweI GCATC 5 cut(s) 63, 386, 467, 585, 616
MabI ACCWGGT 1 cut(s) 113
MaeI CTAG 1 cut(s) 573
MaeII ACGT 2 cut(s) 177, 330
MaeIII GTNAC 1 cut(s) 415
MalI GATC 4 cut(s) 32, 138, 655, 670
MboI GATC 4 cut(s) 30, 136, 653, 668
MboII GAAGA 4 cut(s) 151, 464, 709, 733
MhlI GDGCHC 2 cut(s) 128, 281
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 2 cut(s) 568, 608
MluNI TGGCCA 1 cut(s) 107
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 2 cut(s) 201, 388
MnlI CCTC 9 cut(s) 44, 82, 136, 181, 306, 339, 378, 676, 807
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
MseI TTAA 3 cut(s) 402, 494, 552
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 4 cut(s) 98, 115, 432, 543
MvaI CCWGG 4 cut(s) 98, 115, 432, 543
MvnI CGCG 3 cut(s) 65, 75, 77
MwoI GCNNNNNNNGC 3 cut(s) 455, 464, 476
NcoI CCATGG 2 cut(s) 129, 437
NdeII GATC 4 cut(s) 30, 136, 653, 668
NlaIII CATG 6 cut(s) 133, 346, 376, 441, 787, 814
NlaIV GGNNCC 3 cut(s) 279, 340, 664
NmeAIII GCCGAG 1 cut(s) 260
NspI RCATGY 1 cut(s) 787
PagI TCATGA 1 cut(s) 810
PaqCI CACCTGC 1 cut(s) 739
PciSI GCTCTTC 1 cut(s) 477
PcsI WCGNNNNNNNCGW 3 cut(s) 183, 237, 707
PfeI GAWTC 4 cut(s) 156, 488, 712, 724
PflMI CCANNNNNTGG 3 cut(s) 22, 67, 443
PkrI GCNGC 4 cut(s) 41, 95, 469, 631
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PpuMI RGGWCCY 1 cut(s) 662
PshAI GACNNNNGTC 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 128
Psp1406I AACGTT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 662
Psp6I CCWGG 4 cut(s) 96, 113, 430, 541
PspGI CCWGG 4 cut(s) 96, 113, 430, 541
PspN4I GGNNCC 3 cut(s) 279, 340, 664
PspOMI GGGCCC 1 cut(s) 277
PspPI GGNCC 4 cut(s) 277, 278, 434, 662
PspPPI RGGWCCY 1 cut(s) 662
RsaI GTAC 3 cut(s) 230, 366, 540
RsaNI GTAC 3 cut(s) 229, 365, 539
SacI GAGCTC 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 477
SaqAI TTAA 3 cut(s) 402, 494, 552
SatI GCNGC 4 cut(s) 40, 94, 468, 630
Sau3AI GATC 4 cut(s) 30, 136, 653, 668
Sau96I GGNCC 4 cut(s) 277, 278, 434, 662
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 4 cut(s) 98, 115, 432, 543
SduI GDGCHC 2 cut(s) 128, 281
SexAI ACCWGGT 1 cut(s) 113
SfaNI GCATC 5 cut(s) 63, 386, 467, 585, 616
SinI GGWCC 2 cut(s) 434, 662
SmlI CTYRAG 2 cut(s) 140, 506
SmoI CTYRAG 2 cut(s) 140, 506
Sse9I AATT 2 cut(s) 568, 608
SspMI CTAG 1 cut(s) 573
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 4 cut(s) 96, 113, 430, 541
StyI CCWWGG 2 cut(s) 129, 437
TaaI ACNGT 5 cut(s) 217, 338, 361, 535, 703
TaiI ACGT 2 cut(s) 180, 333
TaqI TCGA 4 cut(s) 240, 380, 461, 652
TasI AATT 2 cut(s) 568, 608
TfiI GAWTC 4 cut(s) 156, 488, 712, 724
Tru1I TTAA 3 cut(s) 402, 494, 552
Tru9I TTAA 3 cut(s) 402, 494, 552
TscAI CASTG 2 cut(s) 222, 538
TseI GCWGC 4 cut(s) 39, 93, 467, 629
TspGWI ACGGA 2 cut(s) 258, 626
TspRI CASTG 2 cut(s) 222, 538
Van91I CCANNNNNTGG 3 cut(s) 22, 67, 443
VpaK11BI GGWCC 2 cut(s) 434, 662
XapI RAATTY 1 cut(s) 568
XceI RCATGY 1 cut(s) 787
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.