Rh2AG256100

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013333
Physical Location & Seq
Reverse (-)
29164350 .. 29167142
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG256100.1

Sequence Viewer

Length: 951 bp
ATGGAGCTCCGCCGTGCTGGAAATTTTTGCCATCCCTACCCTTTGCCCCGTATGGTGTTCTCCTCAACCGCCTCTAACCGTGACAATACAAAACTGAAGTTAAATGATAAAACCCAGATGGAGTTCTACGGCCAACAAGTGGTTCTGATCACCGGCTGCTCGCAGGGTGGCATCGGCCACGCGCTGGCACGCGCCTTCGCCGACGAGGGCTGCCTGGTGGTGGCCACAGCCAGGTCTCTGAGCTCCATGGCCTATCTTGAGGACGACCCAAGATTCTTCCTTCAAGAATTGGACGTGGTTTCCGAGGAGAGCGTGAACGAAGTGGTGTCTACAGTGGTGGAGAAGTACGGCAGAATCGATGTGGTGGTGAACAATGCTGGAGTTCAGTGCGTGGGTCCACTCGCTGAAGTTCCTCTCTCTGCTATGCAACACACGTTTGACACCAACGTTTATGGTCCCATGAGGTTGATACAAGCTGTTATCCCTCACATGGTGTCAAGGAGAAAGGGAAAGATTGTAAATGTTGGAAGTGTTACTGCGTTGTCCCCTGGACCATGGTCTGGTGCTTACACAGCATCTAAAGCTGCTCTTCAAGCACTTAGTGATTCTTTAAGATTGGAACTCAAGCCCTTTGGGATCAATGTAATCACTGTTGTACCTGGAGCTATTAGGTCAAACATTGGAAATTCTGGTTTAGTTGGCTACAACAAGATGCCTGAATGGAAATTATATAAACCTTTTGAGGCAGCAATTCGTGCTAGAGTGACTCTCTCACAAGGACCCAAATCAACCCCTTCAGAGGAGTTTGCGAAGAAGACAGTATCTGCCATTCTGAAGAAGAATCCACCAGCTTGGTTCTCTTCCGGTCACCTCTCTGTCATATTTGCAATCTTGTATTATATGCCAATCGTCGTTAGGGATTTTGTCCTGAGGAAAGCAATGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

316

Amino Acids

34.55

Weight (kDa)

9.44

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 46 - 227 5.5e-51 short chain dehydrogenase
KR PF08659 48 - 205 3e-08 KR domain
Epimerase PF01370 48 - 181 5.2e-07 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 55 - 238 2.8e-36 Enoyl-(Acyl carrier protein) reductase
SDR PF23441 102 - 229 9.6e-06 SDR-like rossmann domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10050 AT5G65205
fragaria_vesca FvH4_1g21770 FvH4_1g21770
malus_domestica MD01G1022400.v1.1
prunus_persica Prupe.6G178200_v2.0.a1
pyrus_communis pycom01g05090
rosa_chinensis RchiOBHm_Chr2g0115641
rosa_laevigata RLG00000018200
rosa_multiflora Rmu_ssc0000197.1_g000085
rosa_roxburghii Rroxscaffold_2G00128030 Rroxscaffold_2G00128900
rosa_rugosa Rorug02G0199000
rosa_samantha Rh2AG256100 Rh2BG266900 Rh2CG261500 Rh2DG264400
rosa_wichuraiana Rw2G020050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 139, 184, 560
AccI GTMKAC 1 cut(s) 329
AccII CGCG 2 cut(s) 182, 192
AciI CCGC 2 cut(s) 10, 69
AclI AACGTT 1 cut(s) 447
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 3 cut(s) 130, 175, 222
AcsI RAATTY 2 cut(s) 22, 685
AcuI CTGAAG 4 cut(s) 116, 426, 780, 854
AdeI CACNNNGTG 2 cut(s) 493, 602
AfaI GTAC 2 cut(s) 347, 657
AfiI CCNNNNNNNGG 7 cut(s) 139, 184, 220, 231, 490, 560, 799
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 2 cut(s) 284, 593
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 4 cut(s) 213, 230, 547, 658
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 7 cut(s) 7, 243, 476, 584, 665, 851, 946
AluI AGCT 7 cut(s) 7, 243, 476, 584, 665, 851, 946
Alw21I GWGCWC 2 cut(s) 9, 245
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 644
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 4 cut(s) 130, 175, 222, 249
ApeKI GCWGC 4 cut(s) 156, 210, 584, 746
ApoI RAATTY 2 cut(s) 22, 685
AspLEI GCGC 2 cut(s) 184, 194
AspS9I GGNCC 4 cut(s) 395, 455, 551, 779
AsuHPI GGTGA 3 cut(s) 142, 379, 860
AvaII GGWCC 4 cut(s) 395, 455, 551, 779
AxyI CCTNAGG 1 cut(s) 929
BaeI ACNNNNGTAYC 2 cut(s) 639, 672
BalI TGGCCA 1 cut(s) 224
BanII GRGCYC 2 cut(s) 9, 245
BbsI GAAGAC 1 cut(s) 821
Bbv12I GWGCWC 2 cut(s) 9, 245
BbvI GCAGC 4 cut(s) 143, 197, 571, 758
BccI CCATC 2 cut(s) 39, 112
BceAI ACGGC 2 cut(s) 145, 364
BciT130I CCWGG 4 cut(s) 215, 232, 549, 660
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 4 cut(s) 157, 211, 585, 747
BlsI GCNGC 4 cut(s) 158, 212, 586, 748
Bme1390I CCNGG 4 cut(s) 215, 232, 549, 660
Bme18I GGWCC 4 cut(s) 395, 455, 551, 779
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 4 cut(s) 395, 455, 551, 779
BmiI GGNNCC 3 cut(s) 396, 457, 781
BmrFI CCNGG 4 cut(s) 215, 232, 549, 660
BmsI GCATC 3 cut(s) 180, 584, 702
BoxI GACNNNNGTC 1 cut(s) 556
BpiI GAAGAC 1 cut(s) 821
BplI GAGNNNNNCTC 2 cut(s) 753, 785
BpmI CTGGAG 2 cut(s) 399, 681
BpuEI CTTGAG 2 cut(s) 278, 608
Bsa29I ATCGAT 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 4 cut(s) 246, 303, 547, 554
BsaWI WCCGGW 1 cut(s) 863
Bsc4I CCNNNNNNNGG 7 cut(s) 139, 184, 220, 231, 490, 560, 799
Bse118I RCCGGY 1 cut(s) 152
Bse21I CCTNAGG 1 cut(s) 929
Bse3DI GCAATG 1 cut(s) 945
BseBI CCWGG 4 cut(s) 215, 232, 549, 660
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 4 cut(s) 246, 303, 547, 554
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 7 cut(s) 139, 184, 220, 231, 490, 560, 799
BseMI GCAATG 1 cut(s) 945
BseMII CTCAG 2 cut(s) 230, 920
BseRI GAGGAG 3 cut(s) 52, 320, 815
BseXI GCAGC 4 cut(s) 143, 197, 571, 758
Bsh1236I CGCG 2 cut(s) 182, 192
BshFI GGCC 4 cut(s) 132, 177, 224, 251
BshVI ATCGAT 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 9, 245
BsiSI CCGG 2 cut(s) 153, 864
BslFI GGGAC 2 cut(s) 441, 529
BslI CCNNNNNNNGG 7 cut(s) 139, 184, 220, 231, 490, 560, 799
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 2 cut(s) 441, 529
BsnI GGCC 4 cut(s) 132, 177, 224, 251
Bso31I GGTCTC 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 9, 245
Bsp143I GATC 2 cut(s) 147, 636
Bsp19I CCATGG 2 cut(s) 246, 554
BspACI CCGC 2 cut(s) 10, 69
BspANI GGCC 4 cut(s) 132, 177, 224, 251
BspCNI CTCAG 2 cut(s) 231, 921
BspDI ATCGAT 1 cut(s) 357
BspFNI CGCG 2 cut(s) 182, 192
BspLI GGNNCC 3 cut(s) 396, 457, 781
BspPI GGATC 1 cut(s) 644
BspQI GCTCTTC 1 cut(s) 594
BspTNI GGTCTC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 945
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 4 cut(s) 246, 303, 547, 554
BssMI GATC 2 cut(s) 147, 636
BssT1I CCWWGG 2 cut(s) 246, 554
Bst2UI CCWGG 4 cut(s) 215, 232, 549, 660
Bst4CI ACNGT 4 cut(s) 80, 334, 652, 820
Bst6I CTCTTC 2 cut(s) 594, 865
BstAPI GCANNNNNTGC 1 cut(s) 755
BstC8I GCNNGC 3 cut(s) 161, 186, 190
BstDEI CTNAG 3 cut(s) 239, 599, 929
BstDSI CCRYGG 2 cut(s) 246, 554
BstEII GGTNACC 1 cut(s) 866
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 2 cut(s) 182, 192
BstHHI GCGC 2 cut(s) 184, 194
BstKTI GATC 2 cut(s) 150, 639
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 147, 636
BstMWI GCNNNNNNNGC 4 cut(s) 572, 581, 593, 755
BstNI CCWGG 4 cut(s) 215, 232, 549, 660
BstPAI GACNNNNGTC 1 cut(s) 556
BstPI GGTNACC 1 cut(s) 866
BstSCI CCNGG 4 cut(s) 213, 230, 547, 658
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 2 cut(s) 182, 192
BstV1I GCAGC 4 cut(s) 143, 197, 571, 758
BstV2I GAAGAC 1 cut(s) 821
BstXI CCANNNNNNTGG 1 cut(s) 852
Bsu15I ATCGAT 1 cut(s) 357
Bsu36I CCTNAGG 1 cut(s) 929
BsuRI GGCC 4 cut(s) 132, 177, 224, 251
BsuTUI ATCGAT 1 cut(s) 357
BtgI CCRYGG 2 cut(s) 246, 554
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 3 cut(s) 339, 392, 648
Cac8I GCNNGC 3 cut(s) 161, 186, 190
CaiI CAGNNNCTG 1 cut(s) 824
CfoI GCGC 2 cut(s) 184, 194
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 4 cut(s) 395, 455, 551, 779
ClaI ATCGAT 1 cut(s) 357
Csp6I GTAC 2 cut(s) 346, 656
CviAII CATG 4 cut(s) 247, 460, 490, 555
CviQI GTAC 2 cut(s) 346, 656
DdeI CTNAG 3 cut(s) 239, 599, 929
DpnI GATC 2 cut(s) 149, 638
DpnII GATC 2 cut(s) 147, 636
DraIII CACNNNGTG 2 cut(s) 493, 602
EaeI YGGCCR 3 cut(s) 130, 175, 222
Eam1104I CTCTTC 2 cut(s) 594, 865
EarI CTCTTC 2 cut(s) 594, 865
Ecl136II GAGCTC 2 cut(s) 7, 243
Eco130I CCWWGG 2 cut(s) 246, 554
Eco24I GRGCYC 2 cut(s) 9, 245
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 4 cut(s) 395, 455, 551, 779
Eco53kI GAGCTC 2 cut(s) 7, 243
Eco57I CTGAAG 4 cut(s) 116, 426, 780, 854
Eco81I CCTNAGG 1 cut(s) 929
Eco91I GGTNACC 1 cut(s) 866
EcoICRI GAGCTC 2 cut(s) 7, 243
EcoO109I RGGNCCY 1 cut(s) 779
EcoO65I GGTNACC 1 cut(s) 866
EcoRII CCWGG 4 cut(s) 213, 230, 547, 658
EcoT14I CCWWGG 2 cut(s) 246, 554
EcoT38I GRGCYC 2 cut(s) 9, 245
ErhI CCWWGG 2 cut(s) 246, 554
FaeI CATG 4 cut(s) 250, 463, 493, 558
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 2 cut(s) 441, 529
FatI CATG 4 cut(s) 246, 459, 489, 554
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 329
Fnu4HI GCNGC 4 cut(s) 157, 211, 585, 747
FokI GGATG 1 cut(s) 18
FriOI GRGCYC 2 cut(s) 9, 245
Fsp4HI GCNGC 4 cut(s) 157, 211, 585, 747
FspBI CTAG 1 cut(s) 759
GlaI GCGC 2 cut(s) 183, 193
GluI GCNGC 4 cut(s) 157, 211, 585, 747
GsuI CTGGAG 2 cut(s) 399, 681
HaeIII GGCC 4 cut(s) 132, 177, 224, 251
HapII CCGG 2 cut(s) 153, 864
HhaI GCGC 2 cut(s) 184, 194
Hin1II CATG 4 cut(s) 250, 463, 493, 558
Hin6I GCGC 2 cut(s) 182, 192
HinP1I GCGC 2 cut(s) 182, 192
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 5 cut(s) 273, 354, 605, 766, 841
HpaII CCGG 2 cut(s) 153, 864
HphI GGTGA 3 cut(s) 142, 379, 860
Hpy166II GTNNAC 4 cut(s) 316, 330, 370, 398
Hpy188I TCNGA 5 cut(s) 147, 240, 304, 799, 834
Hpy188III TCNNGA 3 cut(s) 257, 284, 928
Hpy8I GTNNAC 4 cut(s) 316, 330, 370, 398
Hpy99I CGWCG 2 cut(s) 206, 914
HpyAV CCTTC 3 cut(s) 205, 290, 804
HpyCH4III ACNGT 4 cut(s) 80, 334, 652, 820
HpyCH4IV ACGT 3 cut(s) 294, 434, 447
HpyCH4V TGCA 2 cut(s) 427, 887
HpyF10VI GCNNNNNNNGC 4 cut(s) 572, 581, 593, 755
HpyF3I CTNAG 3 cut(s) 239, 599, 929
HpySE526I ACGT 3 cut(s) 294, 434, 447
Hsp92II CATG 4 cut(s) 250, 463, 493, 558
HspAI GCGC 2 cut(s) 182, 192
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 2 cut(s) 147, 636
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 4 cut(s) 4, 12, 248, 662
Lsp1109I GCAGC 4 cut(s) 143, 197, 571, 758
LweI GCATC 3 cut(s) 180, 584, 702
MaeI CTAG 1 cut(s) 759
MaeII ACGT 3 cut(s) 294, 434, 447
MaeIII GTNAC 4 cut(s) 80, 532, 763, 866
MalI GATC 2 cut(s) 149, 638
MboI GATC 2 cut(s) 147, 636
MboII GAAGA 7 cut(s) 268, 581, 823, 826, 847, 850, 852
MhlI GDGCHC 2 cut(s) 9, 245
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 5 cut(s) 22, 287, 685, 725, 750
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 1 cut(s) 760
MmeI TCCRAC 1 cut(s) 505
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
MseI TTAA 2 cut(s) 101, 611
Msp20I TGGCCA 1 cut(s) 224
MspI CCGG 2 cut(s) 153, 864
MspR9I CCNGG 4 cut(s) 215, 232, 549, 660
MvaI CCWGG 4 cut(s) 215, 232, 549, 660
MvnI CGCG 2 cut(s) 182, 192
MwoI GCNNNNNNNGC 4 cut(s) 572, 581, 593, 755
NcoI CCATGG 2 cut(s) 246, 554
NdeII GATC 2 cut(s) 147, 636
NlaIII CATG 4 cut(s) 250, 463, 493, 558
NlaIV GGNNCC 3 cut(s) 396, 457, 781
NmuCI GTSAC 3 cut(s) 80, 763, 866
PciSI GCTCTTC 1 cut(s) 594
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 354
PfeI GAWTC 4 cut(s) 273, 354, 605, 841
PflMI CCANNNNNTGG 3 cut(s) 139, 184, 560
PkrI GCNGC 4 cut(s) 158, 212, 586, 748
PleI GAGTC 1 cut(s) 760
PpsI GAGTC 1 cut(s) 760
PpuMI RGGWCCY 1 cut(s) 779
PshAI GACNNNNGTC 1 cut(s) 556
Psp124BI GAGCTC 2 cut(s) 9, 245
Psp1406I AACGTT 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 779
Psp6I CCWGG 4 cut(s) 213, 230, 547, 658
PspEI GGTNACC 1 cut(s) 866
PspGI CCWGG 4 cut(s) 213, 230, 547, 658
PspN4I GGNNCC 3 cut(s) 396, 457, 781
PspPI GGNCC 4 cut(s) 395, 455, 551, 779
PspPPI RGGWCCY 1 cut(s) 779
PstNI CAGNNNCTG 1 cut(s) 824
RsaI GTAC 2 cut(s) 347, 657
RsaNI GTAC 2 cut(s) 346, 656
SacI GAGCTC 2 cut(s) 9, 245
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 2 cut(s) 101, 611
SatI GCNGC 4 cut(s) 157, 211, 585, 747
Sau3AI GATC 2 cut(s) 147, 636
Sau96I GGNCC 4 cut(s) 395, 455, 551, 779
SchI GAGTC 1 cut(s) 760
ScrFI CCNGG 4 cut(s) 215, 232, 549, 660
SduI GDGCHC 2 cut(s) 9, 245
SfaNI GCATC 3 cut(s) 180, 584, 702
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 4 cut(s) 395, 455, 551, 779
SmlI CTYRAG 2 cut(s) 257, 623
SmoI CTYRAG 2 cut(s) 257, 623
Sse9I AATT 5 cut(s) 22, 287, 685, 725, 750
SsiI CCGC 2 cut(s) 10, 69
SspMI CTAG 1 cut(s) 759
SstI GAGCTC 2 cut(s) 9, 245
StyD4I CCNGG 4 cut(s) 213, 230, 547, 658
StyI CCWWGG 2 cut(s) 246, 554
TaaI ACNGT 4 cut(s) 80, 334, 652, 820
TaiI ACGT 3 cut(s) 297, 437, 450
TaqI TCGA 1 cut(s) 357
TasI AATT 5 cut(s) 22, 287, 685, 725, 750
TfiI GAWTC 4 cut(s) 273, 354, 605, 841
Tru1I TTAA 2 cut(s) 101, 611
Tru9I TTAA 2 cut(s) 101, 611
TscAI CASTG 3 cut(s) 339, 392, 655
TseFI GTSAC 3 cut(s) 80, 763, 866
TseI GCWGC 4 cut(s) 156, 210, 584, 746
Tsp45I GTSAC 3 cut(s) 80, 763, 866
TspRI CASTG 3 cut(s) 339, 392, 655
Van91I CCANNNNNTGG 3 cut(s) 139, 184, 560
VpaK11BI GGWCC 4 cut(s) 395, 455, 551, 779
XapI RAATTY 2 cut(s) 22, 685
XmiI GTMKAC 1 cut(s) 329
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.