pycom01g05090

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013333
Physical Location & Seq
Forward (+)
4644163 .. 4644983
821 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05090.1

Sequence Viewer

Length: 519 bp
ATGATGTTATGCTATTGCTTAGGTTCCGTGAGGTTGATACAAGCTGTTATCCCCCACATGGCATCAAGAAGAAAAGGAAAGATTGTAAATGTTGGAAGTGTTAGTGTTGCGGCACCTACACCGTGGGCTGGTGCTTACACAGCATCCAAAGCTGCTCTTCATGCACTCAGTGATTCTTTAAGATTGGAACTGCGGCCCTTTGGAATCAGTGTGATCACGGTTGTACCTGGAGGAATTAGGTCAAACATCGGACGCGCTGCTTTGGCCAGCTACAACCAGATGCCCGAATGGAAGTTATACAAGCCTTTCGAAGCAGCAATCCGCGCCAGAGCCACTCTCTCACAAGGTCCTAAATCAACCCCTTCAGACGAGTTTGCAAAGAAGACTGTGGCTGCCATTCTGCAGAAGAATCCTGCAGCTTGGTTCTCCTACGGTCACCTCTCTACCATTTTCGCCATCTTATATCATCTGCCACTCTTCGTTAAAGATTTTGTATTGAGGAAGGCAATGAAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

173

Amino Acids

18.75

Weight (kDa)

10.2

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 6 - 103 5.9e-12 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 7 - 86 1.3e-20 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10050 AT5G65205
fragaria_vesca FvH4_1g21770 FvH4_1g21770
malus_domestica MD01G1022400.v1.1
prunus_persica Prupe.6G178200_v2.0.a1
pyrus_communis pycom01g05090
rosa_chinensis RchiOBHm_Chr2g0115641
rosa_laevigata RLG00000018200
rosa_multiflora Rmu_ssc0000197.1_g000085
rosa_roxburghii Rroxscaffold_2G00128030 Rroxscaffold_2G00128900
rosa_rugosa Rorug02G0199000
rosa_samantha Rh2AG256100 Rh2BG266900 Rh2CG261500 Rh2DG264400
rosa_wichuraiana Rw2G020050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 112
AccII CGCG 2 cut(s) 255, 324
AciI CCGC 3 cut(s) 110, 193, 322
AcoI YGGCCR 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 348
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 2 cut(s) 58, 128
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 4 cut(s) 44, 152, 270, 419
AluI AGCT 4 cut(s) 44, 152, 270, 419
AoxI GGCC 2 cut(s) 194, 264
ApeKI GCWGC 5 cut(s) 152, 257, 314, 392, 416
AspLEI GCGC 2 cut(s) 257, 326
AspS9I GGNCC 2 cut(s) 195, 347
AsuHPI GGTGA 1 cut(s) 428
AsuII TTCGAA 1 cut(s) 309
AvaII GGWCC 1 cut(s) 347
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BalI TGGCCA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 389
BbvI GCAGC 5 cut(s) 139, 244, 326, 379, 428
BccI CCATC 1 cut(s) 464
BciT130I CCWGG 1 cut(s) 228
BclI TGATCA 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 401, 414
BisI GCNGC 7 cut(s) 111, 153, 194, 258, 315, 393, 417
BlsI GCNGC 7 cut(s) 112, 154, 195, 259, 316, 394, 418
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 2 cut(s) 195, 347
BmiI GGNNCC 2 cut(s) 25, 114
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 3 cut(s) 71, 152, 270
BpiI GAAGAC 1 cut(s) 389
BplI GAGNNNNNCTC 2 cut(s) 321, 353
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 122
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 128
Bse3DI GCAATG 1 cut(s) 513
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 2 cut(s) 58, 128
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 181
BseXI GCAGC 5 cut(s) 139, 244, 326, 379, 428
Bsh1236I CGCG 2 cut(s) 255, 324
BshFI GGCC 2 cut(s) 196, 266
BshNI GGYRCC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 58, 128
BsnI GGCC 2 cut(s) 196, 266
Bsp119I TTCGAA 1 cut(s) 309
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 3 cut(s) 110, 193, 322
BspANI GGCC 2 cut(s) 196, 266
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 2 cut(s) 255, 324
BspLI GGNNCC 2 cut(s) 25, 114
BspMAI CTGCAG 2 cut(s) 405, 418
BspQI GCTCTTC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 513
BssECI CCNNGG 1 cut(s) 122
BssMI GATC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 4 cut(s) 123, 220, 388, 434
Bst6I CTCTTC 2 cut(s) 162, 482
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 19, 167
BstDSI CCRYGG 1 cut(s) 122
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 1 cut(s) 143
BstFNI CGCG 2 cut(s) 255, 324
BstHHI GCGC 2 cut(s) 257, 326
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 5 cut(s) 140, 149, 161, 263, 323
BstNI CCWGG 1 cut(s) 228
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 226
BstSFI CTRYAG 2 cut(s) 401, 414
BstUI CGCG 2 cut(s) 255, 324
BstV1I GCAGC 5 cut(s) 139, 244, 326, 379, 428
BstV2I GAAGAC 1 cut(s) 389
BsuRI GGCC 2 cut(s) 196, 266
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 143
BtsIMutI CAGTG 2 cut(s) 175, 214
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 2 cut(s) 257, 326
Cfr13I GGNCC 2 cut(s) 195, 347
CseI GACGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 58, 161
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 2 cut(s) 19, 167
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
DraIII CACNNNGTG 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 162, 482
EarI CTCTTC 2 cut(s) 162, 482
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 348
Eco91I GGTNACC 1 cut(s) 434
EcoO109I RGGNCCY 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 226
FaeI CATG 2 cut(s) 61, 164
FaiI YATR 5 cut(s) 10, 59, 162, 298, 463
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 2 cut(s) 57, 160
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 7 cut(s) 111, 153, 194, 258, 315, 393, 417
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 7 cut(s) 111, 153, 194, 258, 315, 393, 417
GlaI GCGC 2 cut(s) 256, 325
GluI GCNGC 7 cut(s) 111, 153, 194, 258, 315, 393, 417
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 2 cut(s) 196, 266
HgaI GACGC 1 cut(s) 261
HhaI GCGC 2 cut(s) 257, 326
Hin1II CATG 2 cut(s) 61, 164
Hin6I GCGC 2 cut(s) 255, 324
HinP1I GCGC 2 cut(s) 255, 324
HinfI GANTC 3 cut(s) 173, 204, 409
HphI GGTGA 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 251, 367
Hpy188III TCNNGA 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 372, 496
HpyCH4III ACNGT 4 cut(s) 123, 220, 388, 434
HpyCH4V TGCA 4 cut(s) 164, 377, 403, 416
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 149, 161, 263, 323
HpyF3I CTNAG 2 cut(s) 19, 167
Hsp92II CATG 2 cut(s) 61, 164
HspAI GCGC 2 cut(s) 255, 324
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 1 cut(s) 213
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 7 cut(s) 114, 213, 240, 280, 290, 340, 426
Lsp1109I GCAGC 5 cut(s) 139, 244, 326, 379, 428
LweI GCATC 3 cut(s) 71, 152, 270
MaeIII GTNAC 1 cut(s) 434
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 5 cut(s) 81, 149, 394, 418, 469
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 24, 224, 449, 492
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MseI TTAA 2 cut(s) 179, 483
Msp20I TGGCCA 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 2 cut(s) 255, 324
MwoI GCNNNNNNNGC 5 cut(s) 140, 149, 161, 263, 323
NdeII GATC 1 cut(s) 213
NlaIII CATG 2 cut(s) 61, 164
NlaIV GGNNCC 2 cut(s) 25, 114
NmuCI GTSAC 1 cut(s) 434
NspV TTCGAA 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 162
PfeI GAWTC 3 cut(s) 173, 204, 409
PkrI GCNGC 7 cut(s) 112, 154, 195, 259, 316, 394, 418
PpuMI RGGWCCY 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 434
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 25, 114
PspPI GGNCC 2 cut(s) 195, 347
PspPPI RGGWCCY 1 cut(s) 347
PstI CTGCAG 2 cut(s) 405, 418
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 179, 483
SatI GCNGC 7 cut(s) 111, 153, 194, 258, 315, 393, 417
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 195, 347
ScrFI CCNGG 1 cut(s) 228
SfaNI GCATC 3 cut(s) 71, 152, 270
SfcI CTRYAG 2 cut(s) 401, 414
SfuI TTCGAA 1 cut(s) 309
SinI GGWCC 1 cut(s) 347
Sse9I AATT 1 cut(s) 234
SsiI CCGC 3 cut(s) 110, 193, 322
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 4 cut(s) 123, 220, 388, 434
TaqI TCGA 1 cut(s) 309
TasI AATT 1 cut(s) 234
TauI GCSGC 2 cut(s) 113, 196
TfiI GAWTC 3 cut(s) 173, 204, 409
Tru1I TTAA 2 cut(s) 179, 483
Tru9I TTAA 2 cut(s) 179, 483
TscAI CASTG 2 cut(s) 175, 214
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 5 cut(s) 152, 257, 314, 392, 416
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 2 cut(s) 175, 214
VpaK11BI GGWCC 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.