Rorug02G0199000

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013333
Physical Location & Seq
Forward (+)
18576220 .. 18577008
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0199000.1

Sequence Viewer

Length: 639 bp
ATGATGATCTCCCCCATCTGCTGTTTCATATTTTCTCTCGTTCTCTCCTCTTCCTATGCTGCTGTGCAAGACTTCTGTGTTGCAGACTACACAGCTCTTCAAGGCCCTGCAGGGTACTCTTGCAAAGACCCTGCAAAAGTTACGGTAGATGATTTCGTCTACTCTGGCCTAAGAGTTCCTGGCAATACCTCCAATATTCACAAGTTTGGATTTGTACCTGCAGTTGTTGCTCAGTTTCCAGGTCTCAATGGCCTCGGCGTTTCAGTGGCTCGCACGGACTTGGGTGTTGGTGGAGTTATCCCATTCCACACTCACCGCGGAGCTACAGAAGTGCTAATTGTCGCGGAAGGAGGTTCGGTACTTGCAGGGTTCATTGACTCGAATAACAAAGTTTATCTGAAAACTCTGAGCAAGGGTGATAGTATGATTTTCCCTCGAGGTTTATTTCACTTCGCAGTGAATCAAGGCGATACTCCGGTCCTTATGTATGCTAGCTTAAGCAGTGAAAACCCAGGTCTGGATGTTTTGGAGACTTCACTGTTTAAAAACGATTTGTCTACTGACTTGATATCCAAGACTACTTTACTGGACAAATCTCAGATCAGGAAACTTAAGCGTCTTCTTGGTGGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

212

Amino Acids

22.57

Weight (kDa)

6.88

Isoelectric Point (pI)

28.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 56 - 201 1.4e-29 Cupin
Cupin_2 PF07883 93 - 163 8.6e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10050 AT5G65205
fragaria_vesca FvH4_1g21770 FvH4_1g21770
malus_domestica MD01G1022400.v1.1
prunus_persica Prupe.6G178200_v2.0.a1
pyrus_communis pycom01g05090
rosa_chinensis RchiOBHm_Chr2g0115641
rosa_laevigata RLG00000018200
rosa_multiflora Rmu_ssc0000197.1_g000085
rosa_roxburghii Rroxscaffold_2G00128030 Rroxscaffold_2G00128900
rosa_rugosa Rorug02G0199000
rosa_samantha Rh2AG256100 Rh2BG266900 Rh2CG261500 Rh2DG264400
rosa_wichuraiana Rw2G020050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 226
AccI GTMKAC 2 cut(s) 159, 557
AccII CGCG 2 cut(s) 318, 344
AciI CCGC 3 cut(s) 316, 318, 344
AfaI GTAC 4 cut(s) 116, 216, 360, 631
AfiI CCNNNNNNNGG 1 cut(s) 517
AflII CTTAAG 2 cut(s) 496, 611
AgsI TTSAA 1 cut(s) 101
AjnI CCWGG 3 cut(s) 178, 238, 511
AluBI AGCT 3 cut(s) 95, 323, 495
AluI AGCT 3 cut(s) 95, 323, 495
Alw26I GTCTC 2 cut(s) 248, 524
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 3 cut(s) 103, 166, 250
ApeKI GCWGC 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 104, 478
AsuHPI GGTGA 2 cut(s) 305, 428
AsuNHI GCTAGC 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 435
AvaII GGWCC 1 cut(s) 478
BaeI ACNNNNGTAYC 2 cut(s) 462, 495
BbsI GAAGAC 1 cut(s) 611
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 3 cut(s) 180, 240, 513
BcoDI GTCTC 2 cut(s) 248, 524
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 3 cut(s) 108, 219, 324
BfrI CTTAAG 2 cut(s) 496, 611
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 3 cut(s) 180, 240, 513
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 435
BmgT120I GGNCC 2 cut(s) 104, 478
BmrFI CCNGG 3 cut(s) 180, 240, 513
BmtI GCTAGC 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 253, 316, 511
BsaWI WCCGGW 1 cut(s) 475
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 591
BseBI CCWGG 3 cut(s) 180, 240, 513
BseDI CCNNGG 3 cut(s) 253, 316, 511
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMII CTCAG 3 cut(s) 245, 398, 611
BseNI ACTGG 1 cut(s) 591
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 2 cut(s) 318, 344
BshFI GGCC 3 cut(s) 105, 168, 252
BsiHKCI CYCGRG 1 cut(s) 435
BsiSI CCGG 1 cut(s) 476
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 2 cut(s) 248, 524
BsnI GGCC 3 cut(s) 105, 168, 252
Bso31I GGTCTC 1 cut(s) 248
BsoBI CYCGRG 1 cut(s) 435
Bsp143I GATC 2 cut(s) 6, 600
BspACI CCGC 3 cut(s) 316, 318, 344
BspANI GGCC 3 cut(s) 105, 168, 252
BspCNI CTCAG 3 cut(s) 244, 399, 610
BspFNI CGCG 2 cut(s) 318, 344
BspMAI CTGCAG 2 cut(s) 112, 223
BspMI ACCTGC 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 495
BspQI GCTCTTC 1 cut(s) 102
BspTI CTTAAG 2 cut(s) 496, 611
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 3 cut(s) 253, 316, 511
BssMI GATC 2 cut(s) 6, 600
Bst2UI CCWGG 3 cut(s) 180, 240, 513
Bst4CI ACNGT 2 cut(s) 145, 540
Bst6I CTCTTC 2 cut(s) 55, 102
BstAFI CTTAAG 2 cut(s) 496, 611
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 2 cut(s) 271, 493
BstDEI CTNAG 4 cut(s) 170, 231, 407, 597
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 526
BstFNI CGCG 2 cut(s) 318, 344
BstKTI GATC 2 cut(s) 9, 603
BstMAI GTCTC 2 cut(s) 248, 524
BstMBI GATC 2 cut(s) 6, 600
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 3 cut(s) 180, 240, 513
BstSCI CCNGG 3 cut(s) 178, 238, 511
BstSFI CTRYAG 3 cut(s) 108, 219, 324
BstUI CGCG 2 cut(s) 318, 344
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 611
BsuRI GGCC 3 cut(s) 105, 168, 252
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 526
BtsI GCAGTG 2 cut(s) 462, 508
BtsIMutI CAGTG 4 cut(s) 270, 462, 508, 536
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 271, 493
Cfr13I GGNCC 2 cut(s) 104, 478
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 1 cut(s) 605
Csp6I GTAC 4 cut(s) 115, 215, 359, 630
CviJI RGCY 7 cut(s) 95, 105, 168, 252, 269, 323, 495
CviKI_1 RGCY 7 cut(s) 95, 105, 168, 252, 269, 323, 495
CviQI GTAC 4 cut(s) 115, 215, 359, 630
DdeI CTNAG 4 cut(s) 170, 231, 407, 597
DpnI GATC 2 cut(s) 8, 602
DpnII GATC 2 cut(s) 6, 600
DraI TTTAAA 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 55, 102
EarI CTCTTC 2 cut(s) 55, 102
Eco31I GGTCTC 1 cut(s) 248
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 478
Eco88I CYCGRG 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 3 cut(s) 178, 238, 511
EcoRV GATATC 1 cut(s) 570
FaiI YATR 5 cut(s) 29, 57, 425, 485, 489
FblI GTMKAC 2 cut(s) 159, 557
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 533
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 492
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 3 cut(s) 105, 168, 252
HapII CCGG 1 cut(s) 476
HgaI GACGC 1 cut(s) 605
HinfI GANTC 2 cut(s) 377, 460
HpaII CCGG 1 cut(s) 476
HphI GGTGA 2 cut(s) 305, 428
Hpy166II GTNNAC 2 cut(s) 160, 558
Hpy188I TCNGA 3 cut(s) 399, 408, 600
Hpy188III TCNNGA 2 cut(s) 518, 604
Hpy8I GTNNAC 2 cut(s) 160, 558
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 2 cut(s) 145, 540
HpyCH4V TGCA 7 cut(s) 67, 83, 110, 123, 134, 221, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 4 cut(s) 170, 231, 407, 597
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 2 cut(s) 6, 600
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 8, 602
MboI GATC 2 cut(s) 6, 600
MboII GAAGA 3 cut(s) 42, 89, 611
MluCI AATT 2 cut(s) 336, 634
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 6 cut(s) 58, 199, 263, 344, 431, 444
MseI TTAA 4 cut(s) 497, 543, 612, 637
MspA1I CMGCKG 1 cut(s) 318
MspCI CTTAAG 2 cut(s) 496, 611
MspI CCGG 1 cut(s) 476
MspR9I CCNGG 3 cut(s) 180, 240, 513
MvaI CCWGG 3 cut(s) 180, 240, 513
MvnI CGCG 2 cut(s) 318, 344
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 2 cut(s) 6, 600
NheI GCTAGC 1 cut(s) 491
NmeAIII GCCGAG 1 cut(s) 234
PaeR7I CTCGAG 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 460
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Psp6I CCWGG 3 cut(s) 178, 238, 511
PspGI CCWGG 3 cut(s) 178, 238, 511
PspPI GGNCC 2 cut(s) 104, 478
PspXI VCTCGAGB 1 cut(s) 435
PstI CTGCAG 2 cut(s) 112, 223
RsaI GTAC 4 cut(s) 116, 216, 360, 631
RsaNI GTAC 4 cut(s) 115, 215, 359, 630
SacII CCGCGG 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 4 cut(s) 497, 543, 612, 637
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 6, 600
Sau96I GGNCC 2 cut(s) 104, 478
SbfI CCTGCAGG 1 cut(s) 112
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 180, 240, 513
SdaI CCTGCAGG 1 cut(s) 112
SetI ASST 9 cut(s) 97, 191, 220, 244, 325, 355, 442, 497, 517
SfcI CTRYAG 3 cut(s) 108, 219, 324
Sfr274I CTCGAG 1 cut(s) 435
Sfr303I CCGCGG 1 cut(s) 319
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 1 cut(s) 478
SlaI CTCGAG 1 cut(s) 435
SmlI CTYRAG 3 cut(s) 435, 496, 611
SmoI CTYRAG 3 cut(s) 435, 496, 611
Sse8387I CCTGCAGG 1 cut(s) 112
Sse9I AATT 2 cut(s) 336, 634
SsiI CCGC 3 cut(s) 316, 318, 344
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 3 cut(s) 178, 238, 511
TaaI ACNGT 2 cut(s) 145, 540
TaqI TCGA 2 cut(s) 380, 436
TasI AATT 2 cut(s) 336, 634
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 4 cut(s) 497, 543, 612, 637
Tru9I TTAA 4 cut(s) 497, 543, 612, 637
TscAI CASTG 4 cut(s) 270, 462, 508, 543
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 16, 361
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 4 cut(s) 270, 462, 508, 543
Vha464I CTTAAG 2 cut(s) 496, 611
VpaK11BI GGWCC 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 435
XmiI GTMKAC 2 cut(s) 159, 557
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.