Prupe.6G178200_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013333
Physical Location & Seq
Forward (+)
18327300 .. 18330150
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G178200.1

Sequence Viewer

Length: 834 bp
ATGGAATTCTGCGGGCAGCAAGTGGTTCTGATCAGTGGGTGCTCCCAAGGAGGCATAGGCCATGCCCTGGCACGTGCGTTTGCTGCAGAGGACTGTCTGGTGGTGGCTACGAGCAGGTCACTGAGCTCCATGGCTGACCTTCAGGAGGACCCAAGGTTGTTTTTACAAGAGCTGGATGTGGTTTCAGATGAGAGTGTGGATCATGTGGTGTCTAGTGTTTTGGAGAAGTACGGCCGAATTGATGTGCTGATCAACAATGCTGGGGTTCAATGTGTTGGTCCACTTGCAGAAGTCCCTCTCTCTGCTCTGCAAAACACTTTTAATACCAATGTTTATGGTTCCATGAGGTTGATACAAGCTGTTGTCCCTCACATGGCATCAAGGAAAAAGGGAAAGATTGTAAATCTTGGAAGTGTTACTGTTTTGGCCCCTGGACCATGGGCTGGTGGTTACACAGCATCCAAAGCTGCTCTTCAAGCACTTTCTGATTCTTTAAGATTGGAACTCAGGCACTTTGGGATCAATGTAATCACTGTTGTACCTGGAGCTATTAGGTCAAATATTGGAAATTCTGCTTTAGCCGGCTACAACCAGATGCCTGAATGGAAATTATATAAACCTTTTGAAGCAGCAATCCGCGCTAGAGCAACTATGTCACAAGGACCCCATTCAACCTCTGCCGAAGAGTTTGCAAAGAGGACTGCGGCTGCCATTCTGAAGGAGAATCCACTAGCTTGGTTCTCCTATGGCCACCACTCTACCATTTTCGCAATCTTGTATCATCTGCCACTGTTCATAAGGGATTTTGTCATGAAGAAAGCAATGAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

278

Amino Acids

29.95

Weight (kDa)

8.57

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10050 AT5G65205
fragaria_vesca FvH4_1g21770 FvH4_1g21770
malus_domestica MD01G1022400.v1.1
prunus_persica Prupe.6G178200_v2.0.a1
pyrus_communis pycom01g05090
rosa_chinensis RchiOBHm_Chr2g0115641
rosa_laevigata RLG00000018200
rosa_multiflora Rmu_ssc0000197.1_g000085
rosa_roxburghii Rroxscaffold_2G00128030 Rroxscaffold_2G00128900
rosa_rugosa Rorug02G0199000
rosa_samantha Rh2AG256100 Rh2BG266900 Rh2CG261500 Rh2DG264400
rosa_wichuraiana Rw2G020050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AccB7I CCANNNNNTGG 2 cut(s) 67, 443
AccII CGCG 1 cut(s) 639
AciI CCGC 3 cut(s) 12, 637, 704
AclWI GGATC 2 cut(s) 207, 527
AcoI YGGCCR 2 cut(s) 232, 748
AcsI RAATTY 2 cut(s) 5, 568
AcuI CTGAAG 2 cut(s) 125, 737
AcvI CACGTG 1 cut(s) 74
AfaI GTAC 2 cut(s) 230, 540
AfiI CCNNNNNNNGG 4 cut(s) 67, 145, 373, 443
AgsI TTSAA 4 cut(s) 269, 476, 626, 672
AjnI CCWGG 3 cut(s) 66, 430, 541
AluBI AGCT 6 cut(s) 126, 172, 359, 467, 548, 734
AluI AGCT 6 cut(s) 126, 172, 359, 467, 548, 734
Alw21I GWGCWC 2 cut(s) 44, 128
AlwI GGATC 2 cut(s) 207, 527
AoxI GGCC 4 cut(s) 58, 232, 426, 748
ApeKI GCWGC 5 cut(s) 16, 83, 467, 629, 707
ApoI RAATTY 2 cut(s) 5, 568
AspLEI GCGC 1 cut(s) 641
AspS9I GGNCC 5 cut(s) 148, 278, 427, 434, 662
AvaII GGWCC 4 cut(s) 148, 278, 434, 662
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BalI TGGCCA 1 cut(s) 750
BanII GRGCYC 1 cut(s) 128
BbrPI CACGTG 1 cut(s) 74
Bbv12I GWGCWC 2 cut(s) 44, 128
BbvI GCAGC 5 cut(s) 28, 70, 454, 641, 694
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 3 cut(s) 68, 432, 543
BclI TGATCA 2 cut(s) 30, 249
BfaI CTAG 3 cut(s) 213, 642, 731
BfmI CTRYAG 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 6 cut(s) 17, 84, 468, 630, 705, 708
BlsI GCNGC 6 cut(s) 18, 85, 469, 631, 706, 709
Bme1390I CCNGG 3 cut(s) 68, 432, 543
Bme18I GGWCC 4 cut(s) 148, 278, 434, 662
BmgT120I GGNCC 5 cut(s) 148, 278, 427, 434, 662
BmiI GGNNCC 4 cut(s) 150, 340, 429, 664
BmrFI CCNGG 3 cut(s) 68, 432, 543
BmsI GCATC 3 cut(s) 386, 467, 585
BpmI CTGGAG 1 cut(s) 564
BsaAI YACGTR 1 cut(s) 74
BsaJI CCNNGG 6 cut(s) 46, 66, 129, 152, 430, 437
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 145, 373, 443
Bse118I RCCGGY 1 cut(s) 581
Bse3DI GCAATG 1 cut(s) 828
BseBI CCWGG 3 cut(s) 68, 432, 543
BseDI CCNNGG 6 cut(s) 46, 66, 129, 152, 430, 437
BseGI GGATG 2 cut(s) 181, 458
BseLI CCNNNNNNNGG 4 cut(s) 67, 145, 373, 443
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 2 cut(s) 113, 520
BseX3I CGGCCG 1 cut(s) 232
BseXI GCAGC 5 cut(s) 28, 70, 454, 641, 694
BseYI CCCAGC 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 639
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 4 cut(s) 60, 234, 428, 750
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 2 cut(s) 44, 128
BsiSI CCGG 1 cut(s) 582
BslFI GGGAC 2 cut(s) 278, 350
BslI CCNNNNNNNGG 4 cut(s) 67, 145, 373, 443
BsmFI GGGAC 2 cut(s) 278, 350
BsnI GGCC 4 cut(s) 60, 234, 428, 750
Bsp1286I GDGCHC 2 cut(s) 44, 128
Bsp143I GATC 4 cut(s) 30, 199, 249, 519
Bsp19I CCATGG 2 cut(s) 129, 437
BspACI CCGC 3 cut(s) 12, 637, 704
BspANI GGCC 4 cut(s) 60, 234, 428, 750
BspCNI CTCAG 2 cut(s) 114, 519
BspFNI CGCG 1 cut(s) 639
BspHI TCATGA 1 cut(s) 810
BspLI GGNNCC 4 cut(s) 150, 340, 429, 664
BspMAI CTGCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 2 cut(s) 207, 527
BspQI GCTCTTC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 828
BsrFI RCCGGY 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 581
BssECI CCNNGG 6 cut(s) 46, 66, 129, 152, 430, 437
BssMI GATC 4 cut(s) 30, 199, 249, 519
BssT1I CCWWGG 4 cut(s) 46, 129, 152, 437
Bst2UI CCWGG 3 cut(s) 68, 432, 543
Bst4CI ACNGT 4 cut(s) 95, 421, 535, 792
Bst6I CTCTTC 2 cut(s) 477, 678
BstBAI YACGTR 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 14, 583
BstDEI CTNAG 2 cut(s) 122, 506
BstDSI CCRYGG 2 cut(s) 129, 437
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 2 cut(s) 181, 458
BstFNI CGCG 1 cut(s) 639
BstHHI GCGC 1 cut(s) 641
BstKTI GATC 4 cut(s) 33, 202, 252, 522
BstMBI GATC 4 cut(s) 30, 199, 249, 519
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 83, 464, 476, 638
BstNI CCWGG 3 cut(s) 68, 432, 543
BstSCI CCNGG 3 cut(s) 66, 430, 541
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 5 cut(s) 28, 70, 454, 641, 694
BstXI CCANNNNNNTGG 1 cut(s) 735
BstZI CGGCCG 1 cut(s) 232
BsuRI GGCC 4 cut(s) 60, 234, 428, 750
BtgI CCRYGG 2 cut(s) 129, 437
BtsCI GGATG 2 cut(s) 181, 458
BtsIMutI CAGTG 4 cut(s) 40, 119, 531, 788
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 14, 583
CciI TCATGA 1 cut(s) 810
CfoI GCGC 1 cut(s) 641
Cfr10I RCCGGY 1 cut(s) 581
Cfr13I GGNCC 5 cut(s) 148, 278, 427, 434, 662
Csp6I GTAC 2 cut(s) 229, 539
CviAII CATG 7 cut(s) 62, 130, 203, 343, 373, 438, 811
CviQI GTAC 2 cut(s) 229, 539
DdeI CTNAG 2 cut(s) 122, 506
DpnI GATC 4 cut(s) 32, 201, 251, 521
DpnII GATC 4 cut(s) 30, 199, 249, 519
EaeI YGGCCR 2 cut(s) 232, 748
EagI CGGCCG 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 477, 678
EarI CTCTTC 2 cut(s) 477, 678
Ecl136II GAGCTC 1 cut(s) 126
EclXI CGGCCG 1 cut(s) 232
Eco130I CCWWGG 4 cut(s) 46, 129, 152, 437
Eco24I GRGCYC 1 cut(s) 128
Eco47I GGWCC 4 cut(s) 148, 278, 434, 662
Eco52I CGGCCG 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 125, 737
Eco72I CACGTG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 126
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO109I RGGNCCY 2 cut(s) 148, 662
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 3 cut(s) 66, 430, 541
EcoT14I CCWWGG 4 cut(s) 46, 129, 152, 437
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 4 cut(s) 46, 129, 152, 437
FaeI CATG 7 cut(s) 65, 133, 206, 346, 376, 441, 814
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 2 cut(s) 278, 350
FatI CATG 7 cut(s) 61, 129, 202, 342, 372, 437, 810
FauI CCCGC 1 cut(s) 5
FbaI TGATCA 2 cut(s) 30, 249
Fnu4HI GCNGC 6 cut(s) 17, 84, 468, 630, 705, 708
FokI GGATG 2 cut(s) 188, 445
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 6 cut(s) 17, 84, 468, 630, 705, 708
FspBI CTAG 3 cut(s) 213, 642, 731
GlaI GCGC 1 cut(s) 640
GluI GCNGC 6 cut(s) 17, 84, 468, 630, 705, 708
GsaI CCCAGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 4 cut(s) 60, 234, 428, 750
HapII CCGG 1 cut(s) 582
HhaI GCGC 1 cut(s) 641
Hin1II CATG 7 cut(s) 65, 133, 206, 346, 376, 441, 814
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HinfI GANTC 2 cut(s) 488, 724
HpaII CCGG 1 cut(s) 582
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 4 cut(s) 30, 187, 487, 717
Hpy188III TCNNGA 2 cut(s) 143, 811
Hpy8I GTNNAC 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 149, 712
HpyCH4III ACNGT 4 cut(s) 95, 421, 535, 792
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 4 cut(s) 86, 287, 310, 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 464, 476, 638
HpyF3I CTNAG 2 cut(s) 122, 506
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 7 cut(s) 65, 133, 206, 346, 376, 441, 814
HspAI GCGC 1 cut(s) 639
KroI GCCGGC 1 cut(s) 581
KroNI GCCGGC 1 cut(s) 583
Ksp22I TGATCA 2 cut(s) 30, 249
Kzo9I GATC 4 cut(s) 30, 199, 249, 519
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 3 cut(s) 47, 131, 545
Lsp1109I GCAGC 5 cut(s) 28, 70, 454, 641, 694
LweI GCATC 3 cut(s) 386, 467, 585
MaeI CTAG 3 cut(s) 213, 642, 731
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 4 cut(s) 117, 415, 449, 654
MalI GATC 4 cut(s) 32, 201, 251, 521
MboI GATC 4 cut(s) 30, 199, 249, 519
MboII GAAGA 3 cut(s) 464, 695, 826
MhlI GDGCHC 2 cut(s) 44, 128
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 4 cut(s) 5, 237, 568, 608
MluNI TGGCCA 1 cut(s) 750
MnlI CCTC 8 cut(s) 44, 82, 139, 306, 339, 378, 685, 690
Mox20I TGGCCA 1 cut(s) 750
MroNI GCCGGC 1 cut(s) 581
MscI TGGCCA 1 cut(s) 750
MseI TTAA 2 cut(s) 321, 494
Msp20I TGGCCA 1 cut(s) 750
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 3 cut(s) 68, 432, 543
MvaI CCWGG 3 cut(s) 68, 432, 543
MvnI CGCG 1 cut(s) 639
MwoI GCNNNNNNNGC 4 cut(s) 83, 464, 476, 638
NaeI GCCGGC 1 cut(s) 583
NcoI CCATGG 2 cut(s) 129, 437
NdeII GATC 4 cut(s) 30, 199, 249, 519
NgoMIV GCCGGC 1 cut(s) 581
NlaIII CATG 7 cut(s) 65, 133, 206, 346, 376, 441, 814
NlaIV GGNNCC 4 cut(s) 150, 340, 429, 664
NmuCI GTSAC 2 cut(s) 117, 654
PagI TCATGA 1 cut(s) 810
PciSI GCTCTTC 1 cut(s) 477
PdiI GCCGGC 1 cut(s) 583
PfeI GAWTC 2 cut(s) 488, 724
PflMI CCANNNNNTGG 2 cut(s) 67, 443
PkrI GCNGC 6 cut(s) 18, 85, 469, 631, 706, 709
PmaCI CACGTG 1 cut(s) 74
PmlI CACGTG 1 cut(s) 74
Ppu21I YACGTR 1 cut(s) 74
PpuMI RGGWCCY 2 cut(s) 148, 662
Psp124BI GAGCTC 1 cut(s) 128
Psp5II RGGWCCY 2 cut(s) 148, 662
Psp6I CCWGG 3 cut(s) 66, 430, 541
PspCI CACGTG 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 3 cut(s) 66, 430, 541
PspN4I GGNNCC 4 cut(s) 150, 340, 429, 664
PspPI GGNCC 5 cut(s) 148, 278, 427, 434, 662
PspPPI RGGWCCY 2 cut(s) 148, 662
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 2 cut(s) 230, 540
RsaNI GTAC 2 cut(s) 229, 539
SacI GAGCTC 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 477
SaqAI TTAA 2 cut(s) 321, 494
SatI GCNGC 6 cut(s) 17, 84, 468, 630, 705, 708
Sau3AI GATC 4 cut(s) 30, 199, 249, 519
Sau96I GGNCC 5 cut(s) 148, 278, 427, 434, 662
ScrFI CCNGG 3 cut(s) 68, 432, 543
SduI GDGCHC 2 cut(s) 44, 128
SfaNI GCATC 3 cut(s) 386, 467, 585
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 4 cut(s) 148, 278, 434, 662
Sse9I AATT 4 cut(s) 5, 237, 568, 608
SsiI CCGC 3 cut(s) 12, 637, 704
SspI AATATT 1 cut(s) 562
SspMI CTAG 3 cut(s) 213, 642, 731
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 3 cut(s) 66, 430, 541
StyI CCWWGG 4 cut(s) 46, 129, 152, 437
TaaI ACNGT 4 cut(s) 95, 421, 535, 792
TaiI ACGT 1 cut(s) 76
TasI AATT 4 cut(s) 5, 237, 568, 608
TauI GCSGC 1 cut(s) 707
TfiI GAWTC 2 cut(s) 488, 724
Tru1I TTAA 2 cut(s) 321, 494
Tru9I TTAA 2 cut(s) 321, 494
TscAI CASTG 4 cut(s) 40, 126, 538, 795
TseFI GTSAC 2 cut(s) 117, 654
TseI GCWGC 5 cut(s) 16, 83, 467, 629, 707
Tsp45I GTSAC 2 cut(s) 117, 654
TspDTI ATGAA 2 cut(s) 784, 827
TspRI CASTG 4 cut(s) 40, 126, 538, 795
Van91I CCANNNNNTGG 2 cut(s) 67, 443
VpaK11BI GGWCC 4 cut(s) 148, 278, 434, 662
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 2 cut(s) 5, 568
XspI CTAG 3 cut(s) 213, 642, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.