Rmu_ssc0000197.1_g000085

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000197.1
OG0013333
Physical Location & Seq
Forward (+)
358009 .. 359239
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000197.1_g000085.1.cds

Sequence Viewer

Length: 492 bp
atgaggttgatacaagctgttatccctcacatggtgtcaaggagaaagggaaagattgtaaatgttggaagtgtttctgcgttgtcccctggaccatggtctggtgcttacacagcatctaaagctgctcttcaagcacttagtgattctttaagattggaactcaagccctttgggatcaatgtaatcactgttgtacctggagctattaggtcaaacattggaaattctggtttagttggctacaacaagatgcctgaatggaaattatataaaccttttgaggcagcaattcgtgctagagtgactctctcacaaggacccaaatcaaccccttcagaggagtttgcgaagaagacagtatctgccattctgaagaagaatccaccagcttggttctcttccggtcacctctctgtcatatttgcaatcttgtattatatgccaatcgtcgttagggattttgtcctgaggaaagcaatgaagctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

163

Amino Acids

17.81

Weight (kDa)

10.53

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10050 AT5G65205
fragaria_vesca FvH4_1g21770 FvH4_1g21770
malus_domestica MD01G1022400.v1.1
prunus_persica Prupe.6G178200_v2.0.a1
pyrus_communis pycom01g05090
rosa_chinensis RchiOBHm_Chr2g0115641
rosa_laevigata RLG00000018200
rosa_multiflora Rmu_ssc0000197.1_g000085
rosa_roxburghii Rroxscaffold_2G00128030 Rroxscaffold_2G00128900
rosa_rugosa Rorug02G0199000
rosa_samantha Rh2AG256100 Rh2BG266900 Rh2CG261500 Rh2DG264400
rosa_wichuraiana Rw2G020050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 101
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 2 cut(s) 321, 395
AdeI CACNNNGTG 2 cut(s) 34, 143
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 3 cut(s) 31, 101, 340
AgsI TTSAA 1 cut(s) 134
AjnI CCWGG 2 cut(s) 88, 199
AluBI AGCT 5 cut(s) 17, 125, 206, 392, 487
AluI AGCT 5 cut(s) 17, 125, 206, 392, 487
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 125, 287
ApoI RAATTY 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 92, 320
AsuHPI GGTGA 1 cut(s) 401
AvaII GGWCC 2 cut(s) 92, 320
AxyI CCTNAGG 1 cut(s) 470
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BbsI GAAGAC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 112, 299
BciT130I CCWGG 2 cut(s) 90, 201
BfaI CTAG 1 cut(s) 300
BisI GCNGC 2 cut(s) 126, 288
BlsI GCNGC 2 cut(s) 127, 289
Bme1390I CCNGG 2 cut(s) 90, 201
Bme18I GGWCC 2 cut(s) 92, 320
BmgT120I GGNCC 2 cut(s) 92, 320
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 2 cut(s) 90, 201
BmsI GCATC 2 cut(s) 125, 243
BoxI GACNNNNGTC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 362
BplI GAGNNNNNCTC 2 cut(s) 294, 326
BpmI CTGGAG 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 88, 95
BsaWI WCCGGW 1 cut(s) 404
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 101, 340
Bse21I CCTNAGG 1 cut(s) 470
Bse3DI GCAATG 1 cut(s) 486
BseBI CCWGG 2 cut(s) 90, 201
BseDI CCNNGG 2 cut(s) 88, 95
BseLI CCNNNNNNNGG 3 cut(s) 31, 101, 340
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 1 cut(s) 461
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 112, 299
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 3 cut(s) 31, 101, 340
BsmFI GGGAC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 177
Bsp19I CCATGG 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 185
BspQI GCTCTTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 486
BssECI CCNNGG 2 cut(s) 88, 95
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 2 cut(s) 90, 201
Bst4CI ACNGT 2 cut(s) 193, 361
Bst6I CTCTTC 2 cut(s) 135, 406
BstAPI GCANNNNNTGC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 140, 470
BstDSI CCRYGG 1 cut(s) 95
BstEII GGTNACC 1 cut(s) 407
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 4 cut(s) 113, 122, 134, 296
BstNI CCWGG 2 cut(s) 90, 201
BstPAI GACNNNNGTC 1 cut(s) 97
BstPI GGTNACC 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 88, 199
BstV1I GCAGC 2 cut(s) 112, 299
BstV2I GAAGAC 1 cut(s) 362
BstXI CCANNNNNNTGG 1 cut(s) 393
Bsu36I CCTNAGG 1 cut(s) 470
BtgI CCRYGG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 365
Cfr13I GGNCC 2 cut(s) 92, 320
Csp6I GTAC 1 cut(s) 197
CviAII CATG 2 cut(s) 31, 96
CviJI RGCY 7 cut(s) 17, 125, 169, 206, 243, 392, 487
CviKI_1 RGCY 7 cut(s) 17, 125, 169, 206, 243, 392, 487
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 2 cut(s) 140, 470
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
DraIII CACNNNGTG 2 cut(s) 34, 143
Eam1104I CTCTTC 2 cut(s) 135, 406
EarI CTCTTC 2 cut(s) 135, 406
Eco130I CCWWGG 1 cut(s) 95
Eco47I GGWCC 2 cut(s) 92, 320
Eco57I CTGAAG 2 cut(s) 321, 395
Eco81I CCTNAGG 1 cut(s) 470
Eco91I GGTNACC 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 88, 199
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 34, 99
FaiI YATR 7 cut(s) 32, 97, 271, 273, 422, 441, 443
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 1 cut(s) 70
FatI CATG 2 cut(s) 30, 95
Fnu4HI GCNGC 2 cut(s) 126, 288
Fsp4HI GCNGC 2 cut(s) 126, 288
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 126, 288
GsuI CTGGAG 1 cut(s) 222
HapII CCGG 1 cut(s) 405
Hin1II CATG 2 cut(s) 34, 99
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 3 cut(s) 146, 307, 382
HpaII CCGG 1 cut(s) 405
HphI GGTGA 1 cut(s) 401
Hpy188I TCNGA 2 cut(s) 340, 375
Hpy188III TCNNGA 1 cut(s) 469
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 193, 361
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 122, 134, 296
HpyF3I CTNAG 2 cut(s) 140, 470
Hsp92II CATG 2 cut(s) 34, 99
Kzo9I GATC 1 cut(s) 177
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 2 cut(s) 112, 299
LweI GCATC 2 cut(s) 125, 243
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 304, 407
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 6 cut(s) 122, 364, 367, 388, 391, 393
MluCI AATT 3 cut(s) 226, 266, 291
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 5 cut(s) 36, 277, 334, 422, 465
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 1 cut(s) 152
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 2 cut(s) 90, 201
MvaI CCWGG 2 cut(s) 90, 201
MwoI GCNNNNNNNGC 4 cut(s) 113, 122, 134, 296
NcoI CCATGG 1 cut(s) 95
NdeII GATC 1 cut(s) 177
NlaIII CATG 2 cut(s) 34, 99
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 304, 407
PciSI GCTCTTC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 146, 382
PflMI CCANNNNNTGG 1 cut(s) 101
PkrI GCNGC 2 cut(s) 127, 289
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PpuMI RGGWCCY 1 cut(s) 320
PshAI GACNNNNGTC 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 320
Psp6I CCWGG 2 cut(s) 88, 199
PspEI GGTNACC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 88, 199
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 2 cut(s) 92, 320
PspPPI RGGWCCY 1 cut(s) 320
PstNI CAGNNNCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 2 cut(s) 126, 288
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 2 cut(s) 92, 320
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 90, 201
SfaNI GCATC 2 cut(s) 125, 243
SinI GGWCC 2 cut(s) 92, 320
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 226, 266, 291
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 88, 199
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 193, 361
TasI AATT 3 cut(s) 226, 266, 291
TfiI GAWTC 2 cut(s) 146, 382
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 2 cut(s) 304, 407
TseI GCWGC 2 cut(s) 125, 287
Tsp45I GTSAC 2 cut(s) 304, 407
TspRI CASTG 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 101
VpaK11BI GGWCC 2 cut(s) 92, 320
XapI RAATTY 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.