Rroxscaffold_2G00128900

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013333
Physical Location & Seq
Forward (+)
64683611 .. 64686748
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128900.1

Sequence Viewer

Length: 918 bp
ATGCGCTCACCGACGGTTCTTAAACTTATTTCTGATTCTCTCCGCCTATTCTCAAACAACCTCAATCCCACAAAGAAAACCCAAATGGAGTTCTACGGCCGACAAGTTGTTCTGATCACCGGCTGCTCCCAGGGAGGCATCGGCCACGCGCTGGCACGCGCCTTCGCCGACGAGGGCTGCCTGGTGGTGGCCACAGCCAGGTCTCTGAGCTCCATGGCCGATCTTGAGGACGACCCAAGATTCTTCCTTCAAGAATTGGACGTGGTTTCCGAGGAGAGCGTGAACGAAGTGGTGTCTACAGTGGTGGAGAAGTACGGCAGAATCGATGTGGTGGTGAACAATGCTGGAGTTCAGTGCGTGGGTCCACTCGCTGAAGTTCCTCTGTCTGCTCTGCAACACACGTTTGACACCAACGTTTATGGTCCCATGAGGTTGATACAAGCTGTTATCCCTCACATGGCGTCAAGGAGAAAGGGAAAGATTGTAAATGTTGGAAGTGTTACTGCTTTGTCCCCTGGACCATGGTCTGGTGCTTACACAGCATCTAAAGCTGCTCTTCAAGCACTTGGTGATTCTTTAAGATTGGAACTCAAGCCCTTTGGGATCAATGTAATCACTGTTGTACCTGGAGCTATTAGGTCAAACATCGGAAATTCTGGTTTAGTTGGCTACAACAAGATGCCTGAATGGAAATTATACAAACCTTTTGAGGCAGCAATTCGTGCTAGAGTGACTTTCTCACAAGGACCCAAATCAACCCCTTCAGAGGAGTTTGCAAAGAAGACAGTATCTGCCATTCTGAAGAAGAATCCACCAGCTTGGTTCTCTTCCGGTCACCTCTCTGTCATATTTGCAATCTTGTATTATATGCCAATCGTCGTTAGGGATTTTGTCCTGAGGAAAGCAATGAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

305

Amino Acids

33.16

Weight (kDa)

9.53

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 35 - 216 4e-50 short chain dehydrogenase
KR PF08659 37 - 193 5.6e-08 KR domain
Epimerase PF01370 37 - 170 1.1e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 44 - 227 2.1e-36 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10050 AT5G65205
fragaria_vesca FvH4_1g21770 FvH4_1g21770
malus_domestica MD01G1022400.v1.1
prunus_persica Prupe.6G178200_v2.0.a1
pyrus_communis pycom01g05090
rosa_chinensis RchiOBHm_Chr2g0115641
rosa_laevigata RLG00000018200
rosa_multiflora Rmu_ssc0000197.1_g000085
rosa_roxburghii Rroxscaffold_2G00128030 Rroxscaffold_2G00128900
rosa_rugosa Rorug02G0199000
rosa_samantha Rh2AG256100 Rh2BG266900 Rh2CG261500 Rh2DG264400
rosa_wichuraiana Rw2G020050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 151, 527
AccI GTMKAC 1 cut(s) 296
AccII CGCG 2 cut(s) 149, 159
AciI CCGC 1 cut(s) 43
AclI AACGTT 1 cut(s) 414
AclWI GGATC 1 cut(s) 611
AcoI YGGCCR 4 cut(s) 97, 142, 189, 216
AcsI RAATTY 1 cut(s) 652
AcuI CTGAAG 3 cut(s) 393, 747, 821
AcyI GRCGYC 1 cut(s) 461
AdeI CACNNNGTG 1 cut(s) 569
AfaI GTAC 2 cut(s) 314, 624
AfiI CCNNNNNNNGG 6 cut(s) 151, 187, 198, 457, 527, 766
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 2 cut(s) 251, 560
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 5 cut(s) 129, 180, 197, 514, 625
AluBI AGCT 5 cut(s) 210, 443, 551, 632, 818
AluI AGCT 5 cut(s) 210, 443, 551, 632, 818
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 611
AlwNI CAGNNNCTG 1 cut(s) 791
AoxI GGCC 4 cut(s) 97, 142, 189, 216
ApeKI GCWGC 4 cut(s) 123, 177, 551, 713
ApoI RAATTY 1 cut(s) 652
AspLEI GCGC 3 cut(s) 6, 151, 161
AspS9I GGNCC 4 cut(s) 362, 422, 518, 746
AsuHPI GGTGA 4 cut(s) 109, 346, 581, 827
AvaII GGWCC 4 cut(s) 362, 422, 518, 746
AxyI CCTNAGG 1 cut(s) 896
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BalI TGGCCA 1 cut(s) 191
BanII GRGCYC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 788
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 4 cut(s) 110, 164, 538, 725
BceAI ACGGC 2 cut(s) 112, 331
BciT130I CCWGG 5 cut(s) 131, 182, 199, 516, 627
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 1 cut(s) 297
BisI GCNGC 4 cut(s) 124, 178, 552, 714
BlsI GCNGC 4 cut(s) 125, 179, 553, 715
Bme1390I CCNGG 5 cut(s) 131, 182, 199, 516, 627
Bme18I GGWCC 4 cut(s) 362, 422, 518, 746
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 4 cut(s) 362, 422, 518, 746
BmiI GGNNCC 3 cut(s) 363, 424, 748
BmrFI CCNGG 5 cut(s) 131, 182, 199, 516, 627
BmsI GCATC 3 cut(s) 147, 551, 669
BoxI GACNNNNGTC 1 cut(s) 523
BpiI GAAGAC 1 cut(s) 788
BpmI CTGGAG 2 cut(s) 366, 648
BpuEI CTTGAG 2 cut(s) 245, 575
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 6 cut(s) 129, 130, 213, 270, 514, 521
BsaWI WCCGGW 1 cut(s) 830
Bsc4I CCNNNNNNNGG 6 cut(s) 151, 187, 198, 457, 527, 766
Bse118I RCCGGY 1 cut(s) 119
Bse21I CCTNAGG 1 cut(s) 896
Bse3DI GCAATG 1 cut(s) 912
BseBI CCWGG 5 cut(s) 131, 182, 199, 516, 627
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 6 cut(s) 129, 130, 213, 270, 514, 521
BseLI CCNNNNNNNGG 6 cut(s) 151, 187, 198, 457, 527, 766
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 2 cut(s) 197, 887
BseRI GAGGAG 2 cut(s) 287, 782
BseX3I CGGCCG 1 cut(s) 97
BseXI GCAGC 4 cut(s) 110, 164, 538, 725
Bsh1236I CGCG 2 cut(s) 149, 159
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 4 cut(s) 99, 144, 191, 218
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 2 cut(s) 120, 831
BslFI GGGAC 2 cut(s) 408, 496
BslI CCNNNNNNNGG 6 cut(s) 151, 187, 198, 457, 527, 766
BsmAI GTCTC 1 cut(s) 207
BsmFI GGGAC 2 cut(s) 408, 496
BsnI GGCC 4 cut(s) 99, 144, 191, 218
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 212
Bsp143I GATC 3 cut(s) 114, 220, 603
Bsp19I CCATGG 2 cut(s) 213, 521
BspACI CCGC 1 cut(s) 43
BspANI GGCC 4 cut(s) 99, 144, 191, 218
BspCNI CTCAG 2 cut(s) 198, 888
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 2 cut(s) 149, 159
BspLI GGNNCC 3 cut(s) 363, 424, 748
BspPI GGATC 1 cut(s) 611
BspQI GCTCTTC 1 cut(s) 561
BspTNI GGTCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 6 cut(s) 129, 130, 213, 270, 514, 521
BssMI GATC 3 cut(s) 114, 220, 603
BssNI GRCGYC 1 cut(s) 461
BssT1I CCWWGG 2 cut(s) 213, 521
Bst2UI CCWGG 5 cut(s) 131, 182, 199, 516, 627
Bst4CI ACNGT 4 cut(s) 16, 301, 619, 787
Bst6I CTCTTC 2 cut(s) 561, 832
BstACI GRCGYC 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 153, 157
BstDEI CTNAG 2 cut(s) 206, 896
BstDSI CCRYGG 2 cut(s) 213, 521
BstEII GGTNACC 1 cut(s) 833
BstFNI CGCG 2 cut(s) 149, 159
BstHHI GCGC 3 cut(s) 6, 151, 161
BstKTI GATC 3 cut(s) 117, 223, 606
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 3 cut(s) 114, 220, 603
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 4 cut(s) 539, 548, 560, 722
BstNI CCWGG 5 cut(s) 131, 182, 199, 516, 627
BstPAI GACNNNNGTC 1 cut(s) 523
BstPI GGTNACC 1 cut(s) 833
BstSCI CCNGG 5 cut(s) 129, 180, 197, 514, 625
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 2 cut(s) 149, 159
BstV1I GCAGC 4 cut(s) 110, 164, 538, 725
BstV2I GAAGAC 1 cut(s) 788
BstXI CCANNNNNNTGG 1 cut(s) 819
BstZI CGGCCG 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 324
Bsu36I CCTNAGG 1 cut(s) 896
BsuRI GGCC 4 cut(s) 99, 144, 191, 218
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 2 cut(s) 213, 521
BtrI CACGTC 1 cut(s) 262
BtsIMutI CAGTG 3 cut(s) 306, 359, 615
Cac8I GCNNGC 2 cut(s) 153, 157
CaiI CAGNNNCTG 1 cut(s) 791
CfoI GCGC 3 cut(s) 6, 151, 161
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 4 cut(s) 362, 422, 518, 746
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 1 cut(s) 450
Csp6I GTAC 2 cut(s) 313, 623
CviAII CATG 4 cut(s) 214, 427, 457, 522
CviQI GTAC 2 cut(s) 313, 623
DdeI CTNAG 2 cut(s) 206, 896
DpnI GATC 3 cut(s) 116, 222, 605
DpnII GATC 3 cut(s) 114, 220, 603
DraIII CACNNNGTG 1 cut(s) 569
EaeI YGGCCR 4 cut(s) 97, 142, 189, 216
EagI CGGCCG 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 561, 832
EarI CTCTTC 2 cut(s) 561, 832
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 210
EclXI CGGCCG 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 213, 521
Eco24I GRGCYC 1 cut(s) 212
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 4 cut(s) 362, 422, 518, 746
Eco52I CGGCCG 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 3 cut(s) 393, 747, 821
Eco81I CCTNAGG 1 cut(s) 896
Eco91I GGTNACC 1 cut(s) 833
EcoICRI GAGCTC 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 746
EcoO65I GGTNACC 1 cut(s) 833
EcoRII CCWGG 5 cut(s) 129, 180, 197, 514, 625
EcoT14I CCWWGG 2 cut(s) 213, 521
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 2 cut(s) 213, 521
FaeI CATG 4 cut(s) 217, 430, 460, 525
FaiI YATR 9 cut(s) 215, 420, 428, 458, 523, 697, 848, 867, 869
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 2 cut(s) 408, 496
FatI CATG 4 cut(s) 213, 426, 456, 521
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 4 cut(s) 124, 178, 552, 714
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 4 cut(s) 124, 178, 552, 714
FspBI CTAG 1 cut(s) 726
GlaI GCGC 3 cut(s) 5, 150, 160
GluI GCNGC 4 cut(s) 124, 178, 552, 714
GsuI CTGGAG 2 cut(s) 366, 648
HaeIII GGCC 4 cut(s) 99, 144, 191, 218
HapII CCGG 2 cut(s) 120, 831
HgaI GACGC 1 cut(s) 450
HhaI GCGC 3 cut(s) 6, 151, 161
Hin1I GRCGYC 1 cut(s) 461
Hin1II CATG 4 cut(s) 217, 430, 460, 525
Hin6I GCGC 3 cut(s) 4, 149, 159
HinP1I GCGC 3 cut(s) 4, 149, 159
HinfI GANTC 5 cut(s) 35, 240, 321, 572, 808
HpaII CCGG 2 cut(s) 120, 831
HphI GGTGA 4 cut(s) 109, 346, 581, 827
Hpy166II GTNNAC 4 cut(s) 283, 297, 337, 365
Hpy188I TCNGA 7 cut(s) 34, 114, 207, 271, 650, 766, 801
Hpy188III TCNNGA 3 cut(s) 224, 251, 895
Hpy8I GTNNAC 4 cut(s) 283, 297, 337, 365
Hpy99I CGWCG 3 cut(s) 16, 173, 881
HpyAV CCTTC 3 cut(s) 172, 257, 771
HpyCH4III ACNGT 4 cut(s) 16, 301, 619, 787
HpyCH4IV ACGT 3 cut(s) 261, 401, 414
HpyCH4V TGCA 3 cut(s) 394, 776, 854
HpyF10VI GCNNNNNNNGC 4 cut(s) 539, 548, 560, 722
HpyF3I CTNAG 2 cut(s) 206, 896
HpySE526I ACGT 3 cut(s) 261, 401, 414
Hsp92I GRCGYC 1 cut(s) 461
Hsp92II CATG 4 cut(s) 217, 430, 460, 525
HspAI GCGC 3 cut(s) 4, 149, 159
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 3 cut(s) 114, 220, 603
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 3 cut(s) 131, 215, 629
Lsp1109I GCAGC 4 cut(s) 110, 164, 538, 725
LweI GCATC 3 cut(s) 147, 551, 669
MaeI CTAG 1 cut(s) 726
MaeII ACGT 3 cut(s) 261, 401, 414
MaeIII GTNAC 3 cut(s) 499, 730, 833
MalI GATC 3 cut(s) 116, 222, 605
MboI GATC 3 cut(s) 114, 220, 603
MboII GAAGA 6 cut(s) 235, 548, 793, 814, 817, 819
MhlI GDGCHC 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 4 cut(s) 254, 652, 692, 717
MluNI TGGCCA 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 472
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 2 cut(s) 21, 578
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 2 cut(s) 120, 831
MspR9I CCNGG 5 cut(s) 131, 182, 199, 516, 627
MvaI CCWGG 5 cut(s) 131, 182, 199, 516, 627
MvnI CGCG 2 cut(s) 149, 159
MwoI GCNNNNNNNGC 4 cut(s) 539, 548, 560, 722
NcoI CCATGG 2 cut(s) 213, 521
NdeII GATC 3 cut(s) 114, 220, 603
NlaIII CATG 4 cut(s) 217, 430, 460, 525
NlaIV GGNNCC 3 cut(s) 363, 424, 748
NmuCI GTSAC 2 cut(s) 730, 833
PasI CCCWGGG 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 321
PfeI GAWTC 5 cut(s) 35, 240, 321, 572, 808
PflMI CCANNNNNTGG 2 cut(s) 151, 527
PkrI GCNGC 4 cut(s) 125, 179, 553, 715
PpuMI RGGWCCY 1 cut(s) 746
PshAI GACNNNNGTC 1 cut(s) 523
Psp124BI GAGCTC 1 cut(s) 212
Psp1406I AACGTT 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 746
Psp6I CCWGG 5 cut(s) 129, 180, 197, 514, 625
PspEI GGTNACC 1 cut(s) 833
PspGI CCWGG 5 cut(s) 129, 180, 197, 514, 625
PspN4I GGNNCC 3 cut(s) 363, 424, 748
PspPI GGNCC 4 cut(s) 362, 422, 518, 746
PspPPI RGGWCCY 1 cut(s) 746
PstNI CAGNNNCTG 1 cut(s) 791
RsaI GTAC 2 cut(s) 314, 624
RsaNI GTAC 2 cut(s) 313, 623
SacI GAGCTC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 2 cut(s) 21, 578
SatI GCNGC 4 cut(s) 124, 178, 552, 714
Sau3AI GATC 3 cut(s) 114, 220, 603
Sau96I GGNCC 4 cut(s) 362, 422, 518, 746
ScrFI CCNGG 5 cut(s) 131, 182, 199, 516, 627
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 3 cut(s) 147, 551, 669
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 4 cut(s) 362, 422, 518, 746
SmlI CTYRAG 2 cut(s) 224, 590
SmoI CTYRAG 2 cut(s) 224, 590
Sse9I AATT 4 cut(s) 254, 652, 692, 717
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 726
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 5 cut(s) 129, 180, 197, 514, 625
StyI CCWWGG 2 cut(s) 213, 521
TaaI ACNGT 4 cut(s) 16, 301, 619, 787
TaiI ACGT 3 cut(s) 264, 404, 417
TaqI TCGA 1 cut(s) 324
TasI AATT 4 cut(s) 254, 652, 692, 717
TfiI GAWTC 5 cut(s) 35, 240, 321, 572, 808
Tru1I TTAA 2 cut(s) 21, 578
Tru9I TTAA 2 cut(s) 21, 578
TscAI CASTG 3 cut(s) 306, 359, 622
TseFI GTSAC 2 cut(s) 730, 833
TseI GCWGC 4 cut(s) 123, 177, 551, 713
Tsp45I GTSAC 2 cut(s) 730, 833
TspRI CASTG 3 cut(s) 306, 359, 622
Van91I CCANNNNNTGG 2 cut(s) 151, 527
VpaK11BI GGWCC 4 cut(s) 362, 422, 518, 746
XapI RAATTY 1 cut(s) 652
XmiI GTMKAC 1 cut(s) 296
XspI CTAG 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.