Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009765

Physical Location & Seq

Genomic Coordinates Reverse (-)

3836300 .. 3838243

Gene Structure 1944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCAGAGACTCGCCGGAATCAGTCTAGCGATGAACAAATCGAAAAATCAGAGATTCAGCACCAAAGAGTTGTAATTGAGAACAGTCATGGTGAGAAACTCGTAGGAGTTTTGCATGATACTGGTTCTACAGAGACTGTTGTCATCTGCCATGGATTTCGTTCATCAAAGAATCGGATTCCAATGCTGACCATTGCAAGTTTCTTTGAAAGAGCAATGATCAGTTCTTTCCGGTTTGACTTTGCTGGCAACGGGGAAAGCCAAGGATCATTTCAGTATGGTAACTATCGCCGTGAAGTTGAAGATTTGCGCTCTGTTTTGCAACACTTGCGTGGTGTTAACCGTGTGATTTCTGCGATTATCGGACATAGTAAAGGTGGAAATGTGGTGCTTTTGTATGCAGCAAAGTACAATGATGTGCAGACTGTTGTGAATATCTCAGGGCGGTTTTTTCTTGACAGAGGAATCGAATTTCGGCTTGGTAAGGACTACTTCAAGAGAATCAAAGATAATGGATTCATTGATGTTAGCAACAGAAAGGGAAAGTTTGAATATCGGGTAACAGAAGAGAGTCTAATGGACCGTCTCACAACCAATGCTCATGAAGCATGTCTCTCAATTCGTGAAAACTGCAGGGTCTTGACAGTCCATGGGTCAAATGATAGGATTGTGCATGTAACAGAAGCGTCCGAATTTGCTAAACAGATAAAGAATCATAAGCTGTATGTTATTGAAGGAGCTGATCATGAGTTCACTTCTCACCAGCATCAGCTTGCTTCAATCGTTCTCTCATTCTTTAAATTGGATCCTAAGAAAGATGATGAGTCAGGTGATATCAGTACAAGTAACCAAGACTCCATGAGATCAGTTGTTCCTATTACATCGCGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Hydrolase_4 Ribosomal_S10

Protein Analysis

297

Amino Acids

33.77

Weight (kDa)

7.81

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	45 - 151	8.3e-12	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	46 - 154	6.2e-07	alpha/beta hydrolase fold
BAAT_C	PF08840	111 - 239	9.6e-06	BAAT / Acyl-CoA thioester hydrolase C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11910 AT5G11910 AT5G11910 AT5G11910
fragaria_vesca	FvH4_2g31740
malus_domestica	MD15G1058200.v1.1 MD15G1058300.v1.1
prunus_persica	Prupe.1G410900_v2.0.a1 Prupe.1G410900_v2.0.a1
pyrus_communis	pycom15g05480
rosa_chinensis	RchiOBHm_Chr6g0311081
rosa_laevigata	RLG00000010437
rosa_multiflora	Rmu_co8018994.1_g000001 Rmu_sc0008967.1_g000001 Rmu_sc0027354.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158040
rosa_rugosa	Rorug06G0385200
rosa_samantha	Rh6AG499200 Rh6CG515600 Rh6DG502200
rosa_wichuraiana	Rw6G043490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	886
AciI	CCGC	1 cut(s)	445
AclWI	GGATC	3 cut(s)	274, 800, 813
AcsI	RAATTY	3 cut(s)	470, 692, 888
AfaI	GTAC	2 cut(s)	410, 841
AgsI	TTSAA	6 cut(s)	209, 302, 496, 551, 734, 780
AjuI	GAANNNNNNNTTGG	4 cut(s)	255, 287, 462, 494
AleI	CACNNNNGTG	1 cut(s)	330
AluBI	AGCT	3 cut(s)	721, 740, 772
AluI	AGCT	3 cut(s)	721, 740, 772
Alw26I	GTCTC	4 cut(s)	2, 128, 590, 617
AlwI	GGATC	3 cut(s)	274, 800, 813
AlwNI	CAGNNNCTG	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	3 cut(s)	470, 692, 888
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	580
AsuHPI	GGTGA	3 cut(s)	104, 752, 842
AvaII	GGWCC	1 cut(s)	580
BamHI	GGATCC	1 cut(s)	805
BbvI	GCAGC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	276
BclI	TGATCA	2 cut(s)	219, 742
BcoDI	GTCTC	4 cut(s)	2, 128, 590, 617
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	2 cut(s)	129, 631
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	580
BmiI	GGNNCC	1 cut(s)	807
BmsI	GCATC	1 cut(s)	775
BoxI	GACNNNNGTC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	151, 262, 649
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	839, 869
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	2 cut(s)	192, 222
BseDI	CCNNGG	3 cut(s)	151, 262, 649
BseMI	GCAATG	2 cut(s)	192, 222
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	886
BsiSI	CCGG	2 cut(s)	16, 232
BsmAI	GTCTC	4 cut(s)	2, 128, 590, 617
BsmBI	CGTCTC	1 cut(s)	590
Bsp143I	GATC	5 cut(s)	219, 266, 742, 805, 863
Bsp19I	CCATGG	2 cut(s)	151, 649
Bsp68I	TCGCGA	1 cut(s)	886
BspACI	CCGC	1 cut(s)	445
BspCNI	CTCAG	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	886
BspHI	TCATGA	2 cut(s)	601, 745
BspLI	GGNNCC	1 cut(s)	807
BspMAI	CTGCAG	1 cut(s)	635
BspPI	GGATC	3 cut(s)	274, 800, 813
BsrDI	GCAATG	2 cut(s)	192, 222
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	3 cut(s)	151, 262, 649
BssMI	GATC	5 cut(s)	219, 266, 742, 805, 863
BssT1I	CCWWGG	3 cut(s)	151, 262, 649
Bst4CI	ACNGT	6 cut(s)	86, 139, 344, 427, 584, 646
Bst6I	CTCTTC	1 cut(s)	561
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	247, 774
BstDEI	CTNAG	2 cut(s)	439, 810
BstDSI	CCRYGG	2 cut(s)	151, 649
BstFNI	CGCG	1 cut(s)	886
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	5 cut(s)	222, 269, 745, 808, 866
BstMAI	GTCTC	4 cut(s)	2, 128, 590, 617
BstMBI	GATC	5 cut(s)	219, 266, 742, 805, 863
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 605
BstNSI	RCATGY	2 cut(s)	612, 677
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSFI	CTRYAG	2 cut(s)	129, 631
BstUI	CGCG	1 cut(s)	886
BstV1I	GCAGC	1 cut(s)	413
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
BtgI	CCRYGG	2 cut(s)	151, 649
BtgZI	GCGATG	2 cut(s)	45, 867
BtuMI	TCGCGA	1 cut(s)	886
Cac8I	GCNNGC	2 cut(s)	247, 774
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	2 cut(s)	601, 745
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	580
CseI	GACGC	1 cut(s)	675
Csp6I	GTAC	2 cut(s)	409, 840
CviAII	CATG	9 cut(s)	89, 116, 152, 602, 609, 650, 674, 746, 859
CviJI	RGCY	5 cut(s)	261, 478, 721, 740, 772
CviKI_1	RGCY	5 cut(s)	261, 478, 721, 740, 772
CviQI	GTAC	2 cut(s)	409, 840
DdeI	CTNAG	2 cut(s)	439, 810
DpnI	GATC	5 cut(s)	221, 268, 744, 807, 865
DpnII	GATC	5 cut(s)	219, 266, 742, 805, 863
DraI	TTTAAA	1 cut(s)	799
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco130I	CCWWGG	3 cut(s)	151, 262, 649
Eco32I	GATATC	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	835
EcoT14I	CCWWGG	3 cut(s)	151, 262, 649
ErhI	CCWWGG	3 cut(s)	151, 262, 649
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	9 cut(s)	92, 119, 155, 605, 612, 653, 677, 749, 862
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	9 cut(s)	88, 115, 151, 601, 608, 649, 673, 745, 858
FbaI	TGATCA	2 cut(s)	219, 742
Fnu4HI	GCNGC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	402
HapII	CCGG	2 cut(s)	16, 232
HgaI	GACGC	1 cut(s)	675
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	9 cut(s)	92, 119, 155, 605, 612, 653, 677, 749, 862
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	16, 232
HphI	GGTGA	3 cut(s)	104, 752, 842
Hpy166II	GTNNAC	2 cut(s)	340, 753
Hpy188I	TCNGA	5 cut(s)	7, 52, 177, 365, 691
Hpy188III	TCNNGA	7 cut(s)	455, 496, 602, 623, 640, 746, 885
Hpy8I	GTNNAC	2 cut(s)	340, 753
HpyAV	CCTTC	1 cut(s)	728
HpyCH4III	ACNGT	6 cut(s)	86, 139, 344, 427, 584, 646
HpyCH4V	TGCA	7 cut(s)	115, 197, 322, 401, 421, 633, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 605
HpyF3I	CTNAG	2 cut(s)	439, 810
Hsp92II	CATG	9 cut(s)	92, 119, 155, 605, 612, 653, 677, 749, 862
HspAI	GCGC	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	219, 742
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	219, 266, 742, 805, 863
LmnI	GCTCC	1 cut(s)	737
LpnPI	CCDG	8 cut(s)	29, 108, 231, 245, 426, 619, 776, 813
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	1 cut(s)	775
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	4 cut(s)	281, 559, 676, 845
MalI	GATC	5 cut(s)	221, 268, 744, 807, 865
MboI	GATC	5 cut(s)	219, 266, 742, 805, 863
MboII	GAAGA	2 cut(s)	314, 578
MflI	RGATCY	1 cut(s)	805
MluCI	AATT	6 cut(s)	75, 470, 618, 692, 800, 888
MlyI	GAGTC	4 cut(s)	4, 580, 833, 848
MnlI	CCTC	1 cut(s)	455
MseI	TTAA	3 cut(s)	339, 798, 892
MslI	CAYNNNNRTG	1 cut(s)	330
MspI	CCGG	2 cut(s)	16, 232
MvnI	CGCG	1 cut(s)	886
MwoI	GCNNNNNNNGC	2 cut(s)	328, 605
NcoI	CCATGG	2 cut(s)	151, 649
NdeII	GATC	5 cut(s)	219, 266, 742, 805, 863
NlaIII	CATG	9 cut(s)	92, 119, 155, 605, 612, 653, 677, 749, 862
NlaIV	GGNNCC	1 cut(s)	807
NruI	TCGCGA	1 cut(s)	886
NspI	RCATGY	2 cut(s)	612, 677
OliI	CACNNNNGTG	1 cut(s)	330
PagI	TCATGA	2 cut(s)	601, 745
PfeI	GAWTC	8 cut(s)	19, 55, 172, 178, 465, 501, 516, 712
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	4 cut(s)	4, 579, 832, 848
PpsI	GAGTC	4 cut(s)	4, 579, 832, 848
PshAI	GACNNNNGTC	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	807
PspPI	GGNCC	1 cut(s)	580
PstI	CTGCAG	1 cut(s)	635
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	805
RruI	TCGCGA	1 cut(s)	886
RsaI	GTAC	2 cut(s)	410, 841
RsaNI	GTAC	2 cut(s)	409, 840
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	339, 798, 892
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	5 cut(s)	219, 266, 742, 805, 863
Sau96I	GGNCC	1 cut(s)	580
SchI	GAGTC	4 cut(s)	4, 580, 833, 848
SetI	ASST	5 cut(s)	379, 723, 742, 774, 832
SfaNI	GCATC	1 cut(s)	775
SfcI	CTRYAG	2 cut(s)	129, 631
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	6 cut(s)	75, 470, 618, 692, 800, 888
SsiI	CCGC	1 cut(s)	445
SspMI	CTAG	1 cut(s)	27
StyI	CCWWGG	3 cut(s)	151, 262, 649
TaaI	ACNGT	6 cut(s)	86, 139, 344, 427, 584, 646
TaqI	TCGA	2 cut(s)	42, 468
TasI	AATT	6 cut(s)	75, 470, 618, 692, 800, 888
TatI	WGTACW	2 cut(s)	408, 839
TfiI	GAWTC	8 cut(s)	19, 55, 172, 178, 465, 501, 516, 712
Tru1I	TTAA	3 cut(s)	339, 798, 892
Tru9I	TTAA	3 cut(s)	339, 798, 892
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	4 cut(s)	48, 153, 508, 618
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	3 cut(s)	470, 692, 888
XceI	RCATGY	2 cut(s)	612, 677
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.