RchiOBHm_Chr6g0311081

BAAT / Acyl-CoA thioester hydrolase C terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009765
Physical Location & Seq
Reverse (-)
68166884 .. 68169792
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27975

Sequence Viewer

Length: 870 bp
ATGTCCGTAACTCGGCCGAGTCAACAACAACCCGGGGTTCAAAAGCGGAGAGTTGTCATAGAAAACAGCCATGGGGAGAAGCTTGTGGGGATATTACATGATACGGGTTCAAAGGAGCTCGTTGTGTTCTGCCATGGCATACATTCCTCAAAGGAACGCATCCCAATGGTGAACCTTGCTGCTGCGTTGGAAATACAAGGAACAAGTGCTTTCCGCTTTGACTTTGCTGGAAATGGGGAAAGTGAAGGTTCATTTCGATACGGTAACTATCGCAGAGAAGCTGATGATTTACGTGCAGTAGTTCAACACTTTCTTGGGTGCCATTATGTAATAACTGCGATTGTTGGGCACAGTAAAGGGGGAAATGCAGTGATCTTGTATGGTGCAAAGTACAGGGATGTTCCTCTAGTTGTAAATATTTCTGGCCGGTTTAATCTGGAAAGAGGTATTGATGATCGCTTAGGTAAAGACTATCTACAAAGAATCAAGCAAGATGGATTTATTGATGTGAAGAATAAAAGAGGCACATTTCAGTATCGAGTAACTCAAGAGAGTTTGTTGGAGCGGCTAACGATTGATATGCGTGCAGTGTGCCAGTCAATTGATCAAAATTGCAGGGTTTTGACAGTTCATGGATCAATGGATAAGATGGTTCCTGTTGAAGATGCTTACGAGTTCAATAAGATCATACCTAATCATAAACTATACATAGTGGAAGGAGCTGATCATGAATTCACTTCATATCAAAATGAGTTGGCTTCAATTGTGTTGGGTTTCATTAGGAAAGATTTTCACCAGGACAAGTTTATGTTCAAGCAGTCACCACTTGGCACAAGAGCAGCAGATAGATCTGTTAATCCACGATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Hydrolase_4 Ribosomal_S10

Protein Analysis

289

Amino Acids

32.72

Weight (kDa)

8.95

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 38 - 141 1.1e-11 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AccBSI CCGCTC 1 cut(s) 565
AciI CCGC 3 cut(s) 46, 214, 565
AclWI GGATC 1 cut(s) 643
AcoI YGGCCR 2 cut(s) 14, 424
AcsI RAATTY 1 cut(s) 731
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 7 cut(s) 41, 111, 305, 662, 679, 762, 814
AjnI CCWGG 1 cut(s) 795
AluBI AGCT 4 cut(s) 82, 118, 281, 722
AluI AGCT 4 cut(s) 82, 118, 281, 722
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 1 cut(s) 643
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 2 cut(s) 14, 424
ApeKI GCWGC 3 cut(s) 179, 182, 839
ApoI RAATTY 1 cut(s) 731
AsuC2I CCSGG 2 cut(s) 33, 34
AsuHPI GGTGA 3 cut(s) 181, 785, 813
AvaI CYCGRG 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 166, 169, 851
BccI CCATC 2 cut(s) 488, 643
BcgI CGANNNNNNTGC 2 cut(s) 562, 596
BciT130I CCWGG 1 cut(s) 797
BclI TGATCA 2 cut(s) 604, 724
BcnI CCSGG 2 cut(s) 33, 34
BfaI CTAG 1 cut(s) 407
BglII AGATCT 1 cut(s) 848
BisI GCNGC 4 cut(s) 180, 183, 566, 840
BlsI GCNGC 4 cut(s) 181, 184, 567, 841
Bme1390I CCNGG 3 cut(s) 33, 34, 797
BmeT110I CYCGRG 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 320, 654
BmrFI CCNGG 3 cut(s) 33, 34, 797
BmsI GCATC 2 cut(s) 168, 655
Bpu10I CCTNAGC 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 531
BpuMI CCSGG 2 cut(s) 33, 34
BsaAI YACGTR 1 cut(s) 293
BsaJI CCNNGG 4 cut(s) 32, 33, 70, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 595
BseBI CCWGG 1 cut(s) 797
BseDI CCNNGG 4 cut(s) 32, 33, 70, 133
BseGI GGATG 2 cut(s) 159, 403
BseLI CCNNNNNNNGG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 595
BseSI GKGCMC 1 cut(s) 351
BseX3I CGGCCG 1 cut(s) 14
BseXI GCAGC 3 cut(s) 166, 169, 851
BsgI GTGCAG 2 cut(s) 315, 606
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 16, 426
BshNI GGYRCC 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 2 cut(s) 33, 427
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 2 cut(s) 16, 426
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 120, 351
Bsp143I GATC 7 cut(s) 372, 454, 604, 635, 684, 724, 848
Bsp19I CCATGG 2 cut(s) 70, 133
BspACI CCGC 3 cut(s) 46, 214, 565
BspANI GGCC 2 cut(s) 16, 426
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 2 cut(s) 320, 654
BspPI GGATC 1 cut(s) 643
BspT107I GGYRCC 1 cut(s) 318
BsrBI CCGCTC 1 cut(s) 565
BsrFI RCCGGY 1 cut(s) 426
BsrI ACTGG 1 cut(s) 595
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 4 cut(s) 32, 33, 70, 133
BssMI GATC 7 cut(s) 372, 454, 604, 635, 684, 724, 848
BssT1I CCWWGG 2 cut(s) 70, 133
Bst2UI CCWGG 1 cut(s) 797
Bst4CI ACNGT 3 cut(s) 263, 353, 628
BstBAI YACGTR 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 1 cut(s) 460
BstDSI CCRYGG 2 cut(s) 70, 133
BstF5I GGATG 2 cut(s) 159, 403
BstKTI GATC 7 cut(s) 375, 457, 607, 638, 687, 727, 851
BstMBI GATC 7 cut(s) 372, 454, 604, 635, 684, 724, 848
BstMCI CGRYCG 1 cut(s) 17
BstNI CCWGG 1 cut(s) 797
BstSCI CCNGG 3 cut(s) 31, 32, 795
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 3 cut(s) 166, 169, 851
BstX2I RGATCY 1 cut(s) 848
BstYI RGATCY 1 cut(s) 848
BstZI CGGCCG 1 cut(s) 14
BsuRI GGCC 2 cut(s) 16, 426
BtgI CCRYGG 2 cut(s) 70, 133
BtsCI GGATG 2 cut(s) 159, 403
BtsI GCAGTG 2 cut(s) 375, 594
BtsIMutI CAGTG 2 cut(s) 375, 594
Cac8I GCNNGC 1 cut(s) 585
CciI TCATGA 1 cut(s) 727
Cfr10I RCCGGY 1 cut(s) 426
Cfr9I CCCGGG 1 cut(s) 32
Csp6I GTAC 1 cut(s) 391
CviAII CATG 5 cut(s) 71, 98, 134, 632, 728
CviJI RGCY 9 cut(s) 16, 69, 82, 118, 281, 426, 568, 722, 758
CviKI_1 RGCY 9 cut(s) 16, 69, 82, 118, 281, 426, 568, 722, 758
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 460
DpnI GATC 7 cut(s) 374, 456, 606, 637, 686, 726, 850
DpnII GATC 7 cut(s) 372, 454, 604, 635, 684, 724, 848
EaeI YGGCCR 2 cut(s) 14, 424
EagI CGGCCG 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 118
EclXI CGGCCG 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 70, 133
Eco24I GRGCYC 1 cut(s) 120
Eco52I CGGCCG 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 731
EcoRII CCWGG 1 cut(s) 795
EcoT14I CCWWGG 2 cut(s) 70, 133
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 70, 133
FaeI CATG 5 cut(s) 74, 101, 137, 635, 731
FatI CATG 5 cut(s) 70, 97, 133, 631, 727
FbaI TGATCA 2 cut(s) 604, 724
Fnu4HI GCNGC 4 cut(s) 180, 183, 566, 840
FokI GGATG 2 cut(s) 146, 410
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 180, 183, 566, 840
FspBI CTAG 1 cut(s) 407
GluI GCNGC 4 cut(s) 180, 183, 566, 840
HaeIII GGCC 2 cut(s) 16, 426
HapII CCGG 2 cut(s) 33, 427
Hin1II CATG 5 cut(s) 74, 101, 137, 635, 731
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 19, 483
HpaII CCGG 2 cut(s) 33, 427
HphI GGTGA 3 cut(s) 181, 785, 813
Hpy166II GTNNAC 2 cut(s) 23, 172
Hpy188III TCNNGA 3 cut(s) 437, 548, 728
Hpy8I GTNNAC 2 cut(s) 23, 172
HpyAV CCTTC 2 cut(s) 239, 710
HpyCH4III ACNGT 3 cut(s) 263, 353, 628
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 5 cut(s) 296, 368, 386, 587, 615
HpyF3I CTNAG 1 cut(s) 460
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 5 cut(s) 74, 101, 137, 635, 731
Ksp22I TGATCA 2 cut(s) 604, 724
Kzo9I GATC 7 cut(s) 372, 454, 604, 635, 684, 724, 848
LmnI GCTCC 3 cut(s) 115, 562, 719
Lsp1109I GCAGC 3 cut(s) 166, 169, 851
LweI GCATC 2 cut(s) 168, 655
MaeI CTAG 1 cut(s) 407
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 4 cut(s) 7, 263, 541, 819
MalI GATC 7 cut(s) 374, 456, 606, 637, 686, 726, 850
MbiI CCGCTC 1 cut(s) 565
MboI GATC 7 cut(s) 372, 454, 604, 635, 684, 724, 848
MboII GAAGA 2 cut(s) 523, 674
MfeI CAATTG 2 cut(s) 600, 762
MflI RGATCY 1 cut(s) 848
MhlI GDGCHC 2 cut(s) 120, 351
MluCI AATT 4 cut(s) 600, 610, 731, 762
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 2 cut(s) 168, 540
MnlI CCTC 4 cut(s) 157, 414, 437, 515
MseI TTAA 2 cut(s) 432, 855
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 2 cut(s) 33, 427
MspR9I CCNGG 3 cut(s) 33, 34, 797
MunI CAATTG 2 cut(s) 600, 762
MvaI CCWGG 1 cut(s) 797
NciI CCSGG 2 cut(s) 33, 34
NcoI CCATGG 2 cut(s) 70, 133
NdeII GATC 7 cut(s) 372, 454, 604, 635, 684, 724, 848
NlaIII CATG 5 cut(s) 74, 101, 137, 635, 731
NlaIV GGNNCC 2 cut(s) 320, 654
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 819
PagI TCATGA 1 cut(s) 727
PfeI GAWTC 1 cut(s) 483
PkrI GCNGC 4 cut(s) 181, 184, 567, 841
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
Ppu21I YACGTR 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 795
PspGI CCWGG 1 cut(s) 795
PspN4I GGNNCC 2 cut(s) 320, 654
PsuI RGATCY 1 cut(s) 848
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 432, 855
SatI GCNGC 4 cut(s) 180, 183, 566, 840
Sau3AI GATC 7 cut(s) 372, 454, 604, 635, 684, 724, 848
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 3 cut(s) 33, 34, 797
SduI GDGCHC 2 cut(s) 120, 351
SfaNI GCATC 2 cut(s) 168, 655
SmaI CCCGGG 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
Sse9I AATT 4 cut(s) 600, 610, 731, 762
SsiI CCGC 3 cut(s) 46, 214, 565
SspI AATATT 1 cut(s) 418
SspMI CTAG 1 cut(s) 407
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 3 cut(s) 31, 32, 795
StyI CCWWGG 2 cut(s) 70, 133
TaaI ACNGT 3 cut(s) 263, 353, 628
TaiI ACGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 256, 538
TasI AATT 4 cut(s) 600, 610, 731, 762
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 568
TfiI GAWTC 1 cut(s) 483
Tru1I TTAA 2 cut(s) 432, 855
Tru9I TTAA 2 cut(s) 432, 855
TscAI CASTG 2 cut(s) 375, 594
TseFI GTSAC 1 cut(s) 819
TseI GCWGC 3 cut(s) 179, 182, 839
Tsp45I GTSAC 1 cut(s) 819
TspDTI ATGAA 5 cut(s) 240, 620, 729, 744, 766
TspMI CCCGGG 1 cut(s) 32
TspRI CASTG 2 cut(s) 375, 594
XapI RAATTY 1 cut(s) 731
XmaI CCCGGG 1 cut(s) 32
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.