Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008967.1

Orthogroup ID

OG0009765

Physical Location & Seq

Genomic Coordinates Reverse (-)

755 .. 3252

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008967.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgtccgtaactcggccgagtcaacaacaacaacaacccggggttcaaaagcagagagttgtcatagaaaacagccatggggagaagcttgtggggatattacatgatacgggttcaaaggagctcgttgtgttctgccatggcatacattcctcaaaggaacgcatcccaatgctgaaccttgctgctgcgttggaaatacaaggaacaagtgctttccgctttgactttgctggaaatggggaaagtgaaggttcatttcgatatggtaactatcgcagagaagctgatgatttacgtgcagtagttcaacactttcttgggtgccattatgtaataactgcgattgttgggcacagtaaagggggaaatgcagtgatcttgtatggtgcaaagtacaaggacgttcctatagttgtaaatatttctggccggtttaatctggaaagaggtattgatggtcgcttaggtaaagattatctacaaagaatcaagcaagatggatttattgatgtgaagaataaaagaggcacatttcagtatcgagtaactcaagagagtttgttggagcggctaacgattgatatgcgtgcagtgtgccagtcaattgatcaaaattgcagggttttgacagttcatggatcaatggataagatggttcctgttgaagatgcttacgagttcaataagatcatacctaatcataaactatacatagtggaaggagctgatcatgaattcacttcatatcaaaatgagttggcttcaattgtgttgggtttcattaagaaagattttcaccaggacaagtttatgttcaagcagtcaccacttggcacaagagcagcagatagatctgttaatccacgattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Hydrolase_4 Ribosomal_S10

Protein Analysis

291

Amino Acids

32.85

Weight (kDa)

8.93

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11910 AT5G11910 AT5G11910 AT5G11910
fragaria_vesca	FvH4_2g31740
malus_domestica	MD15G1058200.v1.1 MD15G1058300.v1.1
prunus_persica	Prupe.1G410900_v2.0.a1 Prupe.1G410900_v2.0.a1
pyrus_communis	pycom15g05480
rosa_chinensis	RchiOBHm_Chr6g0311081
rosa_laevigata	RLG00000010437
rosa_multiflora	Rmu_co8018994.1_g000001 Rmu_sc0008967.1_g000001 Rmu_sc0027354.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158040
rosa_rugosa	Rorug06G0385200
rosa_samantha	Rh6AG499200 Rh6CG515600 Rh6DG502200
rosa_wichuraiana	Rw6G043490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	324
AccBSI	CCGCTC	1 cut(s)	571
AciI	CCGC	2 cut(s)	220, 571
AclWI	GGATC	1 cut(s)	649
AcoI	YGGCCR	2 cut(s)	14, 430
AcsI	RAATTY	1 cut(s)	737
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	7 cut(s)	47, 117, 311, 668, 685, 768, 820
AjnI	CCWGG	1 cut(s)	801
AluBI	AGCT	4 cut(s)	88, 124, 287, 728
AluI	AGCT	4 cut(s)	88, 124, 287, 728
Alw21I	GWGCWC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	14, 430
ApeKI	GCWGC	3 cut(s)	185, 188, 845
ApoI	RAATTY	1 cut(s)	737
AsuC2I	CCSGG	2 cut(s)	39, 40
AsuHPI	GGTGA	2 cut(s)	791, 819
AvaI	CYCGRG	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	172, 175, 857
BccI	CCATC	3 cut(s)	452, 494, 649
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BciT130I	CCWGG	1 cut(s)	803
BclI	TGATCA	2 cut(s)	610, 730
BcnI	CCSGG	2 cut(s)	39, 40
BfmI	CTRYAG	1 cut(s)	411
BglII	AGATCT	1 cut(s)	854
BisI	GCNGC	4 cut(s)	186, 189, 572, 846
BlsI	GCNGC	4 cut(s)	187, 190, 573, 847
Bme1390I	CCNGG	3 cut(s)	39, 40, 803
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	326, 660
BmrFI	CCNGG	3 cut(s)	39, 40, 803
BmsI	GCATC	2 cut(s)	174, 661
Bpu10I	CCTNAGC	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	2 cut(s)	39, 40
BsaAI	YACGTR	1 cut(s)	299
BsaJI	CCNNGG	4 cut(s)	38, 39, 76, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse118I	RCCGGY	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	803
BseDI	CCNNGG	4 cut(s)	38, 39, 76, 139
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	601
BseSI	GKGCMC	1 cut(s)	357
BseX3I	CGGCCG	1 cut(s)	14
BseXI	GCAGC	3 cut(s)	172, 175, 857
BsgI	GTGCAG	2 cut(s)	321, 612
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	16, 432
BshNI	GGYRCC	1 cut(s)	324
BsiEI	CGRYCG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	39, 433
BslI	CCNNNNNNNGG	1 cut(s)	12
BsnI	GGCC	2 cut(s)	16, 432
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	126, 357
Bsp143I	GATC	6 cut(s)	378, 610, 641, 690, 730, 854
Bsp19I	CCATGG	2 cut(s)	76, 139
BspACI	CCGC	2 cut(s)	220, 571
BspANI	GGCC	2 cut(s)	16, 432
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	2 cut(s)	326, 660
BspPI	GGATC	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	324
BsrBI	CCGCTC	1 cut(s)	571
BsrFI	RCCGGY	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	601
BssAI	RCCGGY	1 cut(s)	432
BssECI	CCNNGG	4 cut(s)	38, 39, 76, 139
BssMI	GATC	6 cut(s)	378, 610, 641, 690, 730, 854
BssT1I	CCWWGG	2 cut(s)	76, 139
Bst2UI	CCWGG	1 cut(s)	803
Bst4CI	ACNGT	2 cut(s)	359, 634
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	1 cut(s)	466
BstDSI	CCRYGG	2 cut(s)	76, 139
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	6 cut(s)	381, 613, 644, 693, 733, 857
BstMBI	GATC	6 cut(s)	378, 610, 641, 690, 730, 854
BstMCI	CGRYCG	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	803
BstSCI	CCNGG	3 cut(s)	37, 38, 801
BstSFI	CTRYAG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	172, 175, 857
BstX2I	RGATCY	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	854
BstZI	CGGCCG	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	16, 432
BtgI	CCRYGG	2 cut(s)	76, 139
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	2 cut(s)	381, 600
BtsIMutI	CAGTG	2 cut(s)	381, 600
Cac8I	GCNNGC	1 cut(s)	591
CciI	TCATGA	1 cut(s)	733
Cfr10I	RCCGGY	1 cut(s)	432
Cfr9I	CCCGGG	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	5 cut(s)	77, 104, 140, 638, 734
CviJI	RGCY	9 cut(s)	16, 75, 88, 124, 287, 432, 574, 728, 764
CviKI_1	RGCY	9 cut(s)	16, 75, 88, 124, 287, 432, 574, 728, 764
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	466
DpnI	GATC	6 cut(s)	380, 612, 643, 692, 732, 856
DpnII	GATC	6 cut(s)	378, 610, 641, 690, 730, 854
EaeI	YGGCCR	2 cut(s)	14, 430
EagI	CGGCCG	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	124
EclXI	CGGCCG	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	76, 139
Eco24I	GRGCYC	1 cut(s)	126
Eco52I	CGGCCG	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	801
EcoT14I	CCWWGG	2 cut(s)	76, 139
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	76, 139
FaeI	CATG	5 cut(s)	80, 107, 143, 641, 737
FatI	CATG	5 cut(s)	76, 103, 139, 637, 733
FbaI	TGATCA	2 cut(s)	610, 730
Fnu4HI	GCNGC	4 cut(s)	186, 189, 572, 846
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	4 cut(s)	186, 189, 572, 846
GluI	GCNGC	4 cut(s)	186, 189, 572, 846
HaeIII	GGCC	2 cut(s)	16, 432
HapII	CCGG	2 cut(s)	39, 433
Hin1II	CATG	5 cut(s)	80, 107, 143, 641, 737
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	19, 489
HpaII	CCGG	2 cut(s)	39, 433
HphI	GGTGA	2 cut(s)	791, 819
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188III	TCNNGA	3 cut(s)	443, 554, 734
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	245, 716
HpyCH4III	ACNGT	2 cut(s)	359, 634
HpyCH4IV	ACGT	2 cut(s)	298, 405
HpyCH4V	TGCA	5 cut(s)	302, 374, 392, 593, 621
HpyF3I	CTNAG	1 cut(s)	466
HpySE526I	ACGT	2 cut(s)	298, 405
Hsp92II	CATG	5 cut(s)	80, 107, 143, 641, 737
Ksp22I	TGATCA	2 cut(s)	610, 730
Kzo9I	GATC	6 cut(s)	378, 610, 641, 690, 730, 854
LmnI	GCTCC	3 cut(s)	121, 568, 725
Lsp1109I	GCAGC	3 cut(s)	172, 175, 857
LweI	GCATC	2 cut(s)	174, 661
MaeII	ACGT	2 cut(s)	298, 405
MaeIII	GTNAC	4 cut(s)	7, 269, 547, 825
MalI	GATC	6 cut(s)	380, 612, 643, 692, 732, 856
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	6 cut(s)	378, 610, 641, 690, 730, 854
MboII	GAAGA	2 cut(s)	529, 680
MfeI	CAATTG	2 cut(s)	606, 768
MflI	RGATCY	1 cut(s)	854
MhlI	GDGCHC	2 cut(s)	126, 357
MluCI	AATT	4 cut(s)	606, 616, 737, 768
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	2 cut(s)	174, 546
MnlI	CCTC	3 cut(s)	163, 443, 521
MseI	TTAA	3 cut(s)	438, 786, 861
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	2 cut(s)	39, 433
MspR9I	CCNGG	3 cut(s)	39, 40, 803
MunI	CAATTG	2 cut(s)	606, 768
MvaI	CCWGG	1 cut(s)	803
NciI	CCSGG	2 cut(s)	39, 40
NcoI	CCATGG	2 cut(s)	76, 139
NdeII	GATC	6 cut(s)	378, 610, 641, 690, 730, 854
NlaIII	CATG	5 cut(s)	80, 107, 143, 641, 737
NlaIV	GGNNCC	2 cut(s)	326, 660
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	825
PagI	TCATGA	1 cut(s)	733
PfeI	GAWTC	1 cut(s)	489
PkrI	GCNGC	4 cut(s)	187, 190, 573, 847
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	801
PspGI	CCWGG	1 cut(s)	801
PspN4I	GGNNCC	2 cut(s)	326, 660
PsuI	RGATCY	1 cut(s)	854
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	3 cut(s)	438, 786, 861
SatI	GCNGC	4 cut(s)	186, 189, 572, 846
Sau3AI	GATC	6 cut(s)	378, 610, 641, 690, 730, 854
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	39, 40, 803
SduI	GDGCHC	2 cut(s)	126, 357
SfaNI	GCATC	2 cut(s)	174, 661
SfcI	CTRYAG	1 cut(s)	411
SmaI	CCCGGG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	4 cut(s)	606, 616, 737, 768
SsiI	CCGC	2 cut(s)	220, 571
SspI	AATATT	1 cut(s)	424
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	37, 38, 801
StyI	CCWWGG	2 cut(s)	76, 139
TaaI	ACNGT	2 cut(s)	359, 634
TaiI	ACGT	2 cut(s)	301, 408
TaqI	TCGA	2 cut(s)	262, 544
TasI	AATT	4 cut(s)	606, 616, 737, 768
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	574
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	3 cut(s)	438, 786, 861
Tru9I	TTAA	3 cut(s)	438, 786, 861
TscAI	CASTG	2 cut(s)	381, 600
TseFI	GTSAC	1 cut(s)	825
TseI	GCWGC	3 cut(s)	185, 188, 845
Tsp45I	GTSAC	1 cut(s)	825
TspDTI	ATGAA	5 cut(s)	246, 626, 735, 750, 772
TspMI	CCCGGG	1 cut(s)	38
TspRI	CASTG	2 cut(s)	381, 600
XapI	RAATTY	1 cut(s)	737
XmaI	CCCGGG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.