Rw6G043490

BAAT / Acyl-CoA thioester hydrolase C terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009765
Physical Location & Seq
Reverse (-)
66777585 .. 66780536
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043490.1

Sequence Viewer

Length: 897 bp
ATGTCCGTAACTCGGCCGAGTCAACAACAACAACAACCCGGGGTTCAAAAGCGGAGAGTCGTCATAGAAAACAGCCATGGGGAGAAGCTTGTGGGGATATTACATGATACGGGTTCAAAGGAGCTCGTTGTGTTCTGCCATGGCATACATTCCTCAAAGGAACGCATCCCAATGGTGAACCTTGCTGCTGCGTTGGAAATACAAGGAACAAGTGCTTTCCGCTTTGACTTTGCTGGAAATGGGGAAAGTGAAGGTTCATTTCGATATGGTAACTATCGCAGAGAAGCTGATGATTTGCGTGCAGTAGTTCAACACTTTCTTGGGTGCCATTATGTAATAACTGCGATTGTTGGTCACAGTAAAGGGGGAAATGCAGTGATCTTGTATGGTGCAAAGTACAAGGACGTTCCTATAGTTGTAAATATTTCTGGCCGGTTTAATCTGGAAAGAGGTATTGATGGTCGCTTAGGTAAAGATTATCTACAAAGAATTAAGCAAGATGGATTTATTGATGTGAAGAATAAAAGAGGCACATTTCAGTATCGAGTAACTCAAGAGAGTTTGTTGGAGCGGCTAACGATTGATATGCGTGCAGTGTGCCAGTCAATTGATCAAAATTGCAGGGTTTTGACAGTTCATGGATCAATGGATAAGATGGTTCCTGTTGAAGATGCTTACGAGTTCAATAAGATCATATCTAATCATAAACTATACATAGTGGAAGGAGCTGATCATGAATTCACTTCATATCAAAATGAATTGGCTTCAATTGTGTTGGGTTTCATTAAGAAAGATTTTCACCAGGACAATGAAGATGATGATTCTAATGATAATAGTTCTTACTGGCAAATCTGCAAGTATAGTACAATTTGCCTCAGAAAACTAACCATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Hydrolase_4 Ribosomal_S10

Protein Analysis

298

Amino Acids

33.74

Weight (kDa)

7.16

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 40 - 143 1.3e-11 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 324
AccBSI CCGCTC 1 cut(s) 571
AciI CCGC 3 cut(s) 52, 220, 571
AclWI GGATC 1 cut(s) 649
AcoI YGGCCR 2 cut(s) 14, 430
AcsI RAATTY 1 cut(s) 737
AfaI GTAC 2 cut(s) 398, 865
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 6 cut(s) 47, 117, 311, 668, 685, 768
AjnI CCWGG 1 cut(s) 801
AluBI AGCT 4 cut(s) 88, 124, 287, 728
AluI AGCT 4 cut(s) 88, 124, 287, 728
Alw21I GWGCWC 1 cut(s) 126
AlwI GGATC 1 cut(s) 649
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 2 cut(s) 14, 430
ApeKI GCWGC 2 cut(s) 185, 188
ApoI RAATTY 1 cut(s) 737
AsuC2I CCSGG 2 cut(s) 39, 40
AsuHPI GGTGA 2 cut(s) 187, 791
AvaI CYCGRG 1 cut(s) 38
BanI GGYRCC 1 cut(s) 324
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 172, 175
BccI CCATC 3 cut(s) 452, 494, 649
BcgI CGANNNNNNTGC 2 cut(s) 568, 602
BciT130I CCWGG 1 cut(s) 803
BclI TGATCA 2 cut(s) 610, 730
BcnI CCSGG 2 cut(s) 39, 40
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 3 cut(s) 186, 189, 572
BlsI GCNGC 3 cut(s) 187, 190, 573
Bme1390I CCNGG 3 cut(s) 39, 40, 803
BmeT110I CYCGRG 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 326, 660
BmrFI CCNGG 3 cut(s) 39, 40, 803
BmsI GCATC 2 cut(s) 174, 661
Bpu10I CCTNAGC 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 2 cut(s) 39, 40
BsaJI CCNNGG 4 cut(s) 38, 39, 76, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 601, 848
BseBI CCWGG 1 cut(s) 803
BseDI CCNNGG 4 cut(s) 38, 39, 76, 139
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 889
BseNI ACTGG 2 cut(s) 601, 848
BseX3I CGGCCG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 172, 175
BsgI GTGCAG 2 cut(s) 321, 612
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 16, 432
BshNI GGYRCC 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 2 cut(s) 39, 433
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 2 cut(s) 16, 432
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 5 cut(s) 378, 610, 641, 690, 730
Bsp19I CCATGG 2 cut(s) 76, 139
BspACI CCGC 3 cut(s) 52, 220, 571
BspANI GGCC 2 cut(s) 16, 432
BspCNI CTCAG 1 cut(s) 888
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 2 cut(s) 326, 660
BspPI GGATC 1 cut(s) 649
BspT107I GGYRCC 1 cut(s) 324
BsrBI CCGCTC 1 cut(s) 571
BsrFI RCCGGY 1 cut(s) 432
BsrI ACTGG 2 cut(s) 601, 848
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 4 cut(s) 38, 39, 76, 139
BssMI GATC 5 cut(s) 378, 610, 641, 690, 730
BssT1I CCWWGG 2 cut(s) 76, 139
Bst2UI CCWGG 1 cut(s) 803
Bst4CI ACNGT 2 cut(s) 359, 634
BstC8I GCNNGC 2 cut(s) 300, 591
BstDEI CTNAG 3 cut(s) 466, 875, 894
BstDSI CCRYGG 2 cut(s) 76, 139
BstF5I GGATG 1 cut(s) 165
BstKTI GATC 5 cut(s) 381, 613, 644, 693, 733
BstMBI GATC 5 cut(s) 378, 610, 641, 690, 730
BstMCI CGRYCG 1 cut(s) 17
BstNI CCWGG 1 cut(s) 803
BstSCI CCNGG 3 cut(s) 37, 38, 801
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 172, 175
BstZI CGGCCG 1 cut(s) 14
BsuRI GGCC 2 cut(s) 16, 432
BtgI CCRYGG 2 cut(s) 76, 139
BtsCI GGATG 1 cut(s) 165
BtsI GCAGTG 2 cut(s) 381, 600
BtsIMutI CAGTG 2 cut(s) 381, 600
Cac8I GCNNGC 2 cut(s) 300, 591
CciI TCATGA 1 cut(s) 733
Cfr10I RCCGGY 1 cut(s) 432
Cfr9I CCCGGG 1 cut(s) 38
Csp6I GTAC 2 cut(s) 397, 864
CviAII CATG 5 cut(s) 77, 104, 140, 638, 734
CviJI RGCY 9 cut(s) 16, 75, 88, 124, 287, 432, 574, 728, 764
CviKI_1 RGCY 9 cut(s) 16, 75, 88, 124, 287, 432, 574, 728, 764
CviQI GTAC 2 cut(s) 397, 864
DdeI CTNAG 3 cut(s) 466, 875, 894
DpnI GATC 5 cut(s) 380, 612, 643, 692, 732
DpnII GATC 5 cut(s) 378, 610, 641, 690, 730
EaeI YGGCCR 2 cut(s) 14, 430
EagI CGGCCG 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 124
EclXI CGGCCG 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 76, 139
Eco24I GRGCYC 1 cut(s) 126
Eco52I CGGCCG 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 801
EcoT14I CCWWGG 2 cut(s) 76, 139
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 2 cut(s) 76, 139
FaeI CATG 5 cut(s) 80, 107, 143, 641, 737
FatI CATG 5 cut(s) 76, 103, 139, 637, 733
FbaI TGATCA 2 cut(s) 610, 730
Fnu4HI GCNGC 3 cut(s) 186, 189, 572
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 3 cut(s) 186, 189, 572
GluI GCNGC 3 cut(s) 186, 189, 572
HaeIII GGCC 2 cut(s) 16, 432
HapII CCGG 2 cut(s) 39, 433
Hin1II CATG 5 cut(s) 80, 107, 143, 641, 737
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 3 cut(s) 19, 57, 821
HpaII CCGG 2 cut(s) 39, 433
HphI GGTGA 2 cut(s) 187, 791
Hpy166II GTNNAC 2 cut(s) 23, 178
Hpy188I TCNGA 1 cut(s) 878
Hpy188III TCNNGA 3 cut(s) 443, 554, 734
Hpy8I GTNNAC 2 cut(s) 23, 178
HpyAV CCTTC 2 cut(s) 245, 716
HpyCH4III ACNGT 2 cut(s) 359, 634
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 6 cut(s) 302, 374, 392, 593, 621, 855
HpyF3I CTNAG 3 cut(s) 466, 875, 894
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 5 cut(s) 80, 107, 143, 641, 737
Ksp22I TGATCA 2 cut(s) 610, 730
Kzo9I GATC 5 cut(s) 378, 610, 641, 690, 730
LmnI GCTCC 3 cut(s) 121, 568, 725
Lsp1109I GCAGC 2 cut(s) 172, 175
LweI GCATC 2 cut(s) 174, 661
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 4 cut(s) 7, 269, 353, 547
MalI GATC 5 cut(s) 380, 612, 643, 692, 732
MbiI CCGCTC 1 cut(s) 571
MboI GATC 5 cut(s) 378, 610, 641, 690, 730
MboII GAAGA 3 cut(s) 529, 680, 824
MfeI CAATTG 2 cut(s) 606, 768
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 7 cut(s) 489, 606, 616, 737, 758, 768, 867
MlyI GAGTC 2 cut(s) 28, 66
MmeI TCCRAC 2 cut(s) 174, 546
MnlI CCTC 4 cut(s) 163, 443, 521, 884
MseI TTAA 3 cut(s) 438, 492, 786
MslI CAYNNNNRTG 1 cut(s) 170
MspI CCGG 2 cut(s) 39, 433
MspR9I CCNGG 3 cut(s) 39, 40, 803
MunI CAATTG 2 cut(s) 606, 768
MvaI CCWGG 1 cut(s) 803
NciI CCSGG 2 cut(s) 39, 40
NcoI CCATGG 2 cut(s) 76, 139
NdeII GATC 5 cut(s) 378, 610, 641, 690, 730
NlaIII CATG 5 cut(s) 80, 107, 143, 641, 737
NlaIV GGNNCC 2 cut(s) 326, 660
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 353
PagI TCATGA 1 cut(s) 733
PfeI GAWTC 1 cut(s) 821
PkrI GCNGC 3 cut(s) 187, 190, 573
PleI GAGTC 2 cut(s) 27, 65
PpsI GAGTC 2 cut(s) 27, 65
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 801
PspGI CCWGG 1 cut(s) 801
PspN4I GGNNCC 2 cut(s) 326, 660
RsaI GTAC 2 cut(s) 398, 865
RsaNI GTAC 2 cut(s) 397, 864
RseI CAYNNNNRTG 1 cut(s) 170
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 3 cut(s) 438, 492, 786
SatI GCNGC 3 cut(s) 186, 189, 572
Sau3AI GATC 5 cut(s) 378, 610, 641, 690, 730
SchI GAGTC 2 cut(s) 28, 66
ScrFI CCNGG 3 cut(s) 39, 40, 803
SduI GDGCHC 1 cut(s) 126
SetI ASST 9 cut(s) 90, 126, 183, 256, 289, 408, 454, 472, 730
SfaNI GCATC 2 cut(s) 174, 661
SfcI CTRYAG 1 cut(s) 411
SmaI CCCGGG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
Sse9I AATT 7 cut(s) 489, 606, 616, 737, 758, 768, 867
SsiI CCGC 3 cut(s) 52, 220, 571
SspI AATATT 1 cut(s) 424
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 37, 38, 801
StyI CCWWGG 2 cut(s) 76, 139
TaaI ACNGT 2 cut(s) 359, 634
TaiI ACGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 262, 544
TasI AATT 7 cut(s) 489, 606, 616, 737, 758, 768, 867
TatI WGTACW 2 cut(s) 396, 863
TauI GCSGC 1 cut(s) 574
TfiI GAWTC 1 cut(s) 821
Tru1I TTAA 3 cut(s) 438, 492, 786
Tru9I TTAA 3 cut(s) 438, 492, 786
TscAI CASTG 2 cut(s) 381, 600
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 2 cut(s) 185, 188
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 7 cut(s) 246, 626, 735, 750, 771, 772, 825
TspMI CCCGGG 1 cut(s) 38
TspRI CASTG 2 cut(s) 381, 600
XapI RAATTY 1 cut(s) 737
XmaI CCCGGG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.