Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009765

Physical Location & Seq

Genomic Coordinates Reverse (-)

65766389 .. 65769267

Gene Structure 2879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG502200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTGAACCTTGCTGCTGCGTTGGAAATACAAGGAATTAGTGCTTTCCGCTTTGACTTTGCTGGAAATGGGGAAAGTGAAGGTTCATTTCGATTCGGTAACTATCGCAGAGAAGCTGATGATTTACGTGCAGTAGTTCAACACTTTCTTGGGTGCCATTATGTAATAACTGCAATTGTTGGGCACAGTAAAGGGGGAAATGCAGTGATCTTGTATGGTGCAAAGTACAGGGATGTTCCTATAGTAGTAAATATTTCTGGCCGGTTTAATCTGGAAAGAGGTATTGAAGGTCGCTTAGGTAAAGATTATCTACAAAGAATCAAGCAAGATGGATTTATTGATGTGAAGAACAAAAGAGGCACATTTCAGTATCGAGTAACTCAAGAGAGTTTGTTGGAGCGGCTAACGATTGATATGCGTGAAGTGTGCCAGTCAATTGATCAAAATTGCAGGGTTTTGACAGTTCATGGATCAATGGATAAGATGGTTCCTGTTGAAGATGCTTACGAGTTCAATAAGATCATACCTAATCATAAACTATACATAGTGGAAGGAGCTGATCATGAATTCACTTCATATCAAAATGAGTTGGCTTCAATTGTGTTGGGTTTCATTAAGAAAGATTTTCACCAGGACAAGTTTATGTTCAAGCAGTCACCACTTGGCACAAGAGCAGCAGATAGATCTGTTAATTCACGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Hydrolase_4 Ribosomal_S10

Protein Analysis

234

Amino Acids

26.58

Weight (kDa)

8.37

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	3 - 87	1.7e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11910 AT5G11910 AT5G11910 AT5G11910
fragaria_vesca	FvH4_2g31740
malus_domestica	MD15G1058200.v1.1 MD15G1058300.v1.1
prunus_persica	Prupe.1G410900_v2.0.a1 Prupe.1G410900_v2.0.a1
pyrus_communis	pycom15g05480
rosa_chinensis	RchiOBHm_Chr6g0311081
rosa_laevigata	RLG00000010437
rosa_multiflora	Rmu_co8018994.1_g000001 Rmu_sc0008967.1_g000001 Rmu_sc0027354.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158040
rosa_rugosa	Rorug06G0385200
rosa_samantha	Rh6AG499200 Rh6CG515600 Rh6DG502200
rosa_wichuraiana	Rw6G043490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	153
AccBSI	CCGCTC	1 cut(s)	400
AciI	CCGC	2 cut(s)	49, 400
AclWI	GGATC	1 cut(s)	478
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	566
AfaI	GTAC	1 cut(s)	227
AgsI	TTSAA	6 cut(s)	140, 287, 497, 514, 597, 649
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	2 cut(s)	116, 557
AluI	AGCT	2 cut(s)	116, 557
AlwI	GGATC	1 cut(s)	478
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	3 cut(s)	14, 17, 674
ApoI	RAATTY	1 cut(s)	566
AsuHPI	GGTGA	3 cut(s)	16, 620, 648
BaeGI	GKGCMC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	4, 686
BccI	CCATC	2 cut(s)	323, 478
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	1 cut(s)	632
BclI	TGATCA	2 cut(s)	439, 559
BfmI	CTRYAG	1 cut(s)	240
BglII	AGATCT	1 cut(s)	683
BisI	GCNGC	4 cut(s)	15, 18, 401, 675
BlsI	GCNGC	4 cut(s)	16, 19, 402, 676
Bme1390I	CCNGG	1 cut(s)	632
BmiI	GGNNCC	2 cut(s)	155, 489
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	1 cut(s)	490
Bpu10I	CCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	632
BseGI	GGATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	4, 686
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	262
BsnI	GGCC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	6 cut(s)	207, 439, 470, 519, 559, 683
BspACI	CCGC	2 cut(s)	49, 400
BspANI	GGCC	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	2 cut(s)	155, 489
BspPI	GGATC	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	261
BssMI	GATC	6 cut(s)	207, 439, 470, 519, 559, 683
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	2 cut(s)	188, 463
BstBAI	YACGTR	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	6 cut(s)	210, 442, 473, 522, 562, 686
BstMBI	GATC	6 cut(s)	207, 439, 470, 519, 559, 683
BstNI	CCWGG	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	630
BstSFI	CTRYAG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	4, 686
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
CciI	TCATGA	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	467, 563
CviJI	RGCY	5 cut(s)	116, 261, 403, 557, 593
CviKI_1	RGCY	5 cut(s)	116, 261, 403, 557, 593
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	295
DpnI	GATC	6 cut(s)	209, 441, 472, 521, 561, 685
DpnII	GATC	6 cut(s)	207, 439, 470, 519, 559, 683
EaeI	YGGCCR	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	630
FaeI	CATG	2 cut(s)	470, 566
FatI	CATG	2 cut(s)	466, 562
FbaI	TGATCA	2 cut(s)	439, 559
Fnu4HI	GCNGC	4 cut(s)	15, 18, 401, 675
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	4 cut(s)	15, 18, 401, 675
GluI	GCNGC	4 cut(s)	15, 18, 401, 675
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	2 cut(s)	470, 566
HinfI	GANTC	2 cut(s)	93, 318
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	3 cut(s)	16, 620, 648
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188III	TCNNGA	4 cut(s)	272, 383, 563, 696
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	74, 281, 545
HpyCH4III	ACNGT	2 cut(s)	188, 463
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	5 cut(s)	131, 173, 203, 221, 450
HpyF3I	CTNAG	1 cut(s)	295
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	2 cut(s)	470, 566
Ksp22I	TGATCA	2 cut(s)	439, 559
Kzo9I	GATC	6 cut(s)	207, 439, 470, 519, 559, 683
LmnI	GCTCC	2 cut(s)	397, 554
Lsp1109I	GCAGC	2 cut(s)	4, 686
LweI	GCATC	1 cut(s)	490
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	3 cut(s)	98, 376, 654
MalI	GATC	6 cut(s)	209, 441, 472, 521, 561, 685
MbiI	CCGCTC	1 cut(s)	400
MboI	GATC	6 cut(s)	207, 439, 470, 519, 559, 683
MboII	GAAGA	2 cut(s)	358, 509
MfeI	CAATTG	3 cut(s)	174, 435, 597
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	7 cut(s)	36, 174, 435, 445, 566, 597, 691
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	2 cut(s)	272, 350
MseI	TTAA	3 cut(s)	267, 615, 690
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	632
MunI	CAATTG	3 cut(s)	174, 435, 597
MvaI	CCWGG	1 cut(s)	632
NdeII	GATC	6 cut(s)	207, 439, 470, 519, 559, 683
NlaIII	CATG	2 cut(s)	470, 566
NlaIV	GGNNCC	2 cut(s)	155, 489
NmuCI	GTSAC	1 cut(s)	654
PagI	TCATGA	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	93, 318
PkrI	GCNGC	4 cut(s)	16, 19, 402, 676
Ppu21I	YACGTR	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	2 cut(s)	155, 489
PsuI	RGATCY	1 cut(s)	683
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	267, 615, 690
SatI	GCNGC	4 cut(s)	15, 18, 401, 675
Sau3AI	GATC	6 cut(s)	207, 439, 470, 519, 559, 683
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	9 cut(s)	12, 85, 118, 130, 283, 292, 301, 529, 559
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	7 cut(s)	36, 174, 435, 445, 566, 597, 691
SsiI	CCGC	2 cut(s)	49, 400
SspI	AATATT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	630
TaaI	ACNGT	2 cut(s)	188, 463
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	91, 373
TasI	AATT	7 cut(s)	36, 174, 435, 445, 566, 597, 691
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	2 cut(s)	93, 318
Tru1I	TTAA	3 cut(s)	267, 615, 690
Tru9I	TTAA	3 cut(s)	267, 615, 690
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	654
TseI	GCWGC	3 cut(s)	14, 17, 674
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	5 cut(s)	75, 455, 564, 579, 601
TspRI	CASTG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.