Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027354.1

Orthogroup ID

OG0009765

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1682

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027354.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 410 bp

atgtccgtaactcggccgagtcaacaacaacaacaacccggggttcaaaagcggagagttgtcatagaaaacagccatggggagaagcttgtggggatattacatgatacgggttcaaaggagctcgttgtgttctgccatggcatacattcctcaaaggaacgcatcccaatggtgaaccttgctgctgcgttggaaatacaaggaacaagtgctttccgctttgactttgctggaaatggggaaagtgaaggttcatttcgatatggtaactatcacagagaagctgatgatttgcgtgcagtagttcaacactttcttgggtgccattatgtaataactgcgattgttgggcacagtaaagggggaaatgcagtgatcttgtatggtgcaaagtacaaggacgttcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Hydrolase_4 Ribosomal_S10

Protein Analysis

137

Amino Acids

15.06

Weight (kDa)

8.61

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11910 AT5G11910 AT5G11910 AT5G11910
fragaria_vesca	FvH4_2g31740
malus_domestica	MD15G1058200.v1.1 MD15G1058300.v1.1
prunus_persica	Prupe.1G410900_v2.0.a1 Prupe.1G410900_v2.0.a1
pyrus_communis	pycom15g05480
rosa_chinensis	RchiOBHm_Chr6g0311081
rosa_laevigata	RLG00000010437
rosa_multiflora	Rmu_co8018994.1_g000001 Rmu_sc0008967.1_g000001 Rmu_sc0027354.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158040
rosa_rugosa	Rorug06G0385200
rosa_samantha	Rh6AG499200 Rh6CG515600 Rh6DG502200
rosa_wichuraiana	Rw6G043490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	324
AciI	CCGC	2 cut(s)	52, 220
AcoI	YGGCCR	1 cut(s)	14
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	47, 117, 311
AluBI	AGCT	3 cut(s)	88, 124, 287
AluI	AGCT	3 cut(s)	88, 124, 287
Alw21I	GWGCWC	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	185, 188
AsuC2I	CCSGG	2 cut(s)	39, 40
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	172, 175
BcnI	CCSGG	2 cut(s)	39, 40
BisI	GCNGC	2 cut(s)	186, 189
BlsI	GCNGC	2 cut(s)	187, 190
Bme1390I	CCNGG	2 cut(s)	39, 40
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	2 cut(s)	39, 40
BmsI	GCATC	1 cut(s)	174
BpuMI	CCSGG	2 cut(s)	39, 40
BsaJI	CCNNGG	4 cut(s)	38, 39, 76, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
BseDI	CCNNGG	4 cut(s)	38, 39, 76, 139
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	357
BseX3I	CGGCCG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	172, 175
BsgI	GTGCAG	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	324
BsiEI	CGRYCG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	12
BsnI	GGCC	1 cut(s)	16
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	126, 357
Bsp143I	GATC	1 cut(s)	378
Bsp19I	CCATGG	2 cut(s)	76, 139
BspACI	CCGC	2 cut(s)	52, 220
BspANI	GGCC	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	324
BssECI	CCNNGG	4 cut(s)	38, 39, 76, 139
BssMI	GATC	1 cut(s)	378
BssT1I	CCWWGG	2 cut(s)	76, 139
Bst4CI	ACNGT	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	300
BstDSI	CCRYGG	2 cut(s)	76, 139
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	378
BstMCI	CGRYCG	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	37, 38
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	172, 175
BstZI	CGGCCG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	2 cut(s)	76, 139
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	300
Cfr9I	CCCGGG	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	77, 104, 140
CviJI	RGCY	5 cut(s)	16, 75, 88, 124, 287
CviKI_1	RGCY	5 cut(s)	16, 75, 88, 124, 287
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	14
EagI	CGGCCG	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	124
EclXI	CGGCCG	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	76, 139
Eco24I	GRGCYC	1 cut(s)	126
Eco52I	CGGCCG	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	76, 139
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	76, 139
FaeI	CATG	3 cut(s)	80, 107, 143
FaiI	YATR	8 cut(s)	65, 78, 105, 141, 146, 267, 333, 387
FatI	CATG	3 cut(s)	76, 103, 139
Fnu4HI	GCNGC	2 cut(s)	186, 189
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	186, 189
GluI	GCNGC	2 cut(s)	186, 189
HaeIII	GGCC	1 cut(s)	16
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	3 cut(s)	80, 107, 143
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	23, 178
Hpy8I	GTNNAC	2 cut(s)	23, 178
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	302, 374, 392
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	80, 107, 143
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	52, 219
Lsp1109I	GCAGC	2 cut(s)	172, 175
LweI	GCATC	1 cut(s)	174
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	7, 269
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MhlI	GDGCHC	2 cut(s)	126, 357
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	1 cut(s)	163
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	39, 40
NciI	CCSGG	2 cut(s)	39, 40
NcoI	CCATGG	2 cut(s)	76, 139
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	3 cut(s)	80, 107, 143
NlaIV	GGNNCC	1 cut(s)	326
NmeAIII	GCCGAG	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	187, 190
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	326
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	126
SatI	GCNGC	2 cut(s)	186, 189
Sau3AI	GATC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	39, 40
SduI	GDGCHC	2 cut(s)	126, 357
SetI	ASST	6 cut(s)	90, 126, 183, 256, 289, 408
SfaNI	GCATC	1 cut(s)	174
SmaI	CCCGGG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	170
SsiI	CCGC	2 cut(s)	52, 220
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	37, 38
StyI	CCWWGG	2 cut(s)	76, 139
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	262
TatI	WGTACW	1 cut(s)	396
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	2 cut(s)	185, 188
TspDTI	ATGAA	1 cut(s)	246
TspMI	CCCGGG	1 cut(s)	38
TspRI	CASTG	1 cut(s)	381
XmaI	CCCGGG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.