Rroxscaffold_7G00158040

BAAT / Acyl-CoA thioester hydrolase C terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009765
Physical Location & Seq
Forward (+)
1643959 .. 1646914
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158040.1

Sequence Viewer

Length: 894 bp
ATGTCCGTAACTCGGCCGAGTCAACAACAACAACCCGGGGTTCAAAAGCGCAGAGTTGTTATAGTAAACAGCCATGGGGAGAAGCTTGTGGGGATATTACATGATACGGGTTCAAAGGAGCTCGTTGTGTTCTGCCATGGCATACATTCCTCGAAGGAACGCATCCCAATGGTGAACCTTGCTGCTGCGTTGGAAATACAAGGAACAAGTGCTTTCCGCTTTGACTTTGCTGGAAATGGGGAAAGTGAAGGTTCATTTCGATATGGTAACTATCGCAGAGAAGCTGATGATTTACGTGCAGTAGTTCAACACTTTCTTGGGTGCCATTATGTAATAACTGCAATTGTTGGGCACAGTAAAGGGGGAAATGCAGTGATCTTGTATGGTGCAGAGTACAGGGATGTTCCTATAGTTGTAAATATTTCTGGCCGGTTTAATCTGGAAAGAGGTATTGAAGGTCGCTTAGGTAGAGATTATCTACAAAGAATCAAGCAAGATGGATTTATTGATGTGAAGAACAAAAGAGGCACATTTCAGTATCGAGTAACTCAAGAGAGTTTGTTGGAGCGGCTAACGATTGATATGCGTGCAGTGTGCCAGTCAATTGATCAAAATTGCAGGGTTTTGACAGTTCATGGATCAATGGATAAGATGGTTCCTGTTGAAGATGCTTACGAGTTCAATAAGATCATACCTAATCATAAACTATACATAGTGGAAGGAGCTGATCATGAATTCACTTCATATCAAAATGAGTTGGCTTCAATTGTGTTGGGTTTCATTAAGAAAGATTTTCACCAGGACAATGAAGATGATGATTATAATGATAATAGTTCTTACTGGCAAATCTGCAAGGAGAGTACAATTGGCCTCAGAAAACTAACCATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Hydrolase_4 Ribosomal_S10

Protein Analysis

297

Amino Acids

33.66

Weight (kDa)

6.6

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 39 - 141 1.4e-11 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 321
AccBSI CCGCTC 1 cut(s) 568
AciI CCGC 2 cut(s) 217, 568
AclWI GGATC 1 cut(s) 646
AcoI YGGCCR 2 cut(s) 14, 427
AcsI RAATTY 1 cut(s) 734
AfaI GTAC 2 cut(s) 395, 862
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 7 cut(s) 44, 114, 308, 455, 665, 682, 765
AjnI CCWGG 1 cut(s) 798
AluBI AGCT 4 cut(s) 85, 121, 284, 725
AluI AGCT 4 cut(s) 85, 121, 284, 725
Alw21I GWGCWC 1 cut(s) 123
AlwI GGATC 1 cut(s) 646
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 3 cut(s) 14, 427, 868
ApeKI GCWGC 2 cut(s) 182, 185
ApoI RAATTY 1 cut(s) 734
AspLEI GCGC 1 cut(s) 51
AsuC2I CCSGG 2 cut(s) 36, 37
AsuHPI GGTGA 2 cut(s) 184, 788
AvaI CYCGRG 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 354
BanI GGYRCC 1 cut(s) 321
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 169, 172
BccI CCATC 2 cut(s) 491, 646
BcgI CGANNNNNNTGC 2 cut(s) 565, 599
BciT130I CCWGG 1 cut(s) 800
BclI TGATCA 2 cut(s) 607, 727
BcnI CCSGG 2 cut(s) 36, 37
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 3 cut(s) 183, 186, 569
BlsI GCNGC 3 cut(s) 184, 187, 570
Bme1390I CCNGG 3 cut(s) 36, 37, 800
BmeT110I CYCGRG 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 323, 657
BmrFI CCNGG 3 cut(s) 36, 37, 800
BmsI GCATC 2 cut(s) 171, 658
Bpu10I CCTNAGC 1 cut(s) 463
BpuEI CTTGAG 1 cut(s) 534
BpuMI CCSGG 2 cut(s) 36, 37
BsaAI YACGTR 1 cut(s) 296
BsaJI CCNNGG 4 cut(s) 35, 36, 73, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 429
Bse1I ACTGG 2 cut(s) 598, 845
BseBI CCWGG 1 cut(s) 800
BseDI CCNNGG 4 cut(s) 35, 36, 73, 136
BseGI GGATG 2 cut(s) 162, 406
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 886
BseNI ACTGG 2 cut(s) 598, 845
BseSI GKGCMC 1 cut(s) 354
BseX3I CGGCCG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 169, 172
BsgI GTGCAG 3 cut(s) 318, 408, 609
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 3 cut(s) 16, 429, 870
BshNI GGYRCC 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 2 cut(s) 36, 430
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 3 cut(s) 16, 429, 870
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 123, 354
Bsp143I GATC 5 cut(s) 375, 607, 638, 687, 727
Bsp19I CCATGG 2 cut(s) 73, 136
BspACI CCGC 2 cut(s) 217, 568
BspANI GGCC 3 cut(s) 16, 429, 870
BspCNI CTCAG 1 cut(s) 885
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 2 cut(s) 323, 657
BspPI GGATC 1 cut(s) 646
BspT107I GGYRCC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 429
BsrI ACTGG 2 cut(s) 598, 845
BssAI RCCGGY 1 cut(s) 429
BssECI CCNNGG 4 cut(s) 35, 36, 73, 136
BssMI GATC 5 cut(s) 375, 607, 638, 687, 727
BssT1I CCWWGG 2 cut(s) 73, 136
Bst2UI CCWGG 1 cut(s) 800
Bst4CI ACNGT 2 cut(s) 356, 631
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 3 cut(s) 463, 872, 891
BstDSI CCRYGG 2 cut(s) 73, 136
BstF5I GGATG 2 cut(s) 162, 406
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 5 cut(s) 378, 610, 641, 690, 730
BstMBI GATC 5 cut(s) 375, 607, 638, 687, 727
BstMCI CGRYCG 1 cut(s) 17
BstNI CCWGG 1 cut(s) 800
BstSCI CCNGG 3 cut(s) 34, 35, 798
BstSFI CTRYAG 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 169, 172
BstZI CGGCCG 1 cut(s) 14
BsuRI GGCC 3 cut(s) 16, 429, 870
BtgI CCRYGG 2 cut(s) 73, 136
BtsCI GGATG 2 cut(s) 162, 406
BtsI GCAGTG 2 cut(s) 378, 597
BtsIMutI CAGTG 2 cut(s) 378, 597
Cac8I GCNNGC 1 cut(s) 588
CciI TCATGA 1 cut(s) 730
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 1 cut(s) 429
Cfr9I CCCGGG 1 cut(s) 35
Csp6I GTAC 2 cut(s) 394, 861
CviAII CATG 5 cut(s) 74, 101, 137, 635, 731
CviQI GTAC 2 cut(s) 394, 861
DdeI CTNAG 3 cut(s) 463, 872, 891
DpnI GATC 5 cut(s) 377, 609, 640, 689, 729
DpnII GATC 5 cut(s) 375, 607, 638, 687, 727
EaeI YGGCCR 2 cut(s) 14, 427
EagI CGGCCG 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 121
EclXI CGGCCG 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 73, 136
Eco24I GRGCYC 1 cut(s) 123
Eco52I CGGCCG 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 798
EcoT14I CCWWGG 2 cut(s) 73, 136
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 2 cut(s) 73, 136
FaeI CATG 5 cut(s) 77, 104, 140, 638, 734
FatI CATG 5 cut(s) 73, 100, 136, 634, 730
FbaI TGATCA 2 cut(s) 607, 727
Fnu4HI GCNGC 3 cut(s) 183, 186, 569
FokI GGATG 2 cut(s) 149, 413
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 3 cut(s) 183, 186, 569
GlaI GCGC 1 cut(s) 50
GluI GCNGC 3 cut(s) 183, 186, 569
HaeIII GGCC 3 cut(s) 16, 429, 870
HapII CCGG 2 cut(s) 36, 430
HhaI GCGC 1 cut(s) 51
Hin1II CATG 5 cut(s) 77, 104, 140, 638, 734
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 2 cut(s) 19, 486
HpaII CCGG 2 cut(s) 36, 430
HphI GGTGA 2 cut(s) 184, 788
Hpy166II GTNNAC 3 cut(s) 23, 67, 175
Hpy188I TCNGA 1 cut(s) 875
Hpy188III TCNNGA 3 cut(s) 440, 551, 731
Hpy8I GTNNAC 3 cut(s) 23, 67, 175
HpyAV CCTTC 4 cut(s) 148, 242, 449, 713
HpyCH4III ACNGT 2 cut(s) 356, 631
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 7 cut(s) 299, 341, 371, 389, 590, 618, 852
HpyF3I CTNAG 3 cut(s) 463, 872, 891
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 5 cut(s) 77, 104, 140, 638, 734
HspAI GCGC 1 cut(s) 49
Ksp22I TGATCA 2 cut(s) 607, 727
Kzo9I GATC 5 cut(s) 375, 607, 638, 687, 727
LmnI GCTCC 3 cut(s) 118, 565, 722
Lsp1109I GCAGC 2 cut(s) 169, 172
LweI GCATC 2 cut(s) 171, 658
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 3 cut(s) 7, 266, 544
MalI GATC 5 cut(s) 377, 609, 640, 689, 729
MbiI CCGCTC 1 cut(s) 568
MboI GATC 5 cut(s) 375, 607, 638, 687, 727
MboII GAAGA 3 cut(s) 526, 677, 821
MfeI CAATTG 4 cut(s) 342, 603, 765, 864
MhlI GDGCHC 2 cut(s) 123, 354
MluCI AATT 6 cut(s) 342, 603, 613, 734, 765, 864
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 2 cut(s) 171, 543
MnlI CCTC 4 cut(s) 160, 440, 518, 881
MseI TTAA 2 cut(s) 435, 783
MslI CAYNNNNRTG 1 cut(s) 167
MspI CCGG 2 cut(s) 36, 430
MspR9I CCNGG 3 cut(s) 36, 37, 800
MunI CAATTG 4 cut(s) 342, 603, 765, 864
MvaI CCWGG 1 cut(s) 800
NciI CCSGG 2 cut(s) 36, 37
NcoI CCATGG 2 cut(s) 73, 136
NdeII GATC 5 cut(s) 375, 607, 638, 687, 727
NlaIII CATG 5 cut(s) 77, 104, 140, 638, 734
NlaIV GGNNCC 2 cut(s) 323, 657
NmeAIII GCCGAG 1 cut(s) 42
PagI TCATGA 1 cut(s) 730
PfeI GAWTC 1 cut(s) 486
PkrI GCNGC 3 cut(s) 184, 187, 570
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
Ppu21I YACGTR 1 cut(s) 296
PsiI TTATAA 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 798
PspGI CCWGG 1 cut(s) 798
PspN4I GGNNCC 2 cut(s) 323, 657
RsaI GTAC 2 cut(s) 395, 862
RsaNI GTAC 2 cut(s) 394, 861
RseI CAYNNNNRTG 1 cut(s) 167
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 2 cut(s) 435, 783
SatI GCNGC 3 cut(s) 183, 186, 569
Sau3AI GATC 5 cut(s) 375, 607, 638, 687, 727
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 3 cut(s) 36, 37, 800
SduI GDGCHC 2 cut(s) 123, 354
SfaNI GCATC 2 cut(s) 171, 658
SfcI CTRYAG 1 cut(s) 408
SmaI CCCGGG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
Sse9I AATT 6 cut(s) 342, 603, 613, 734, 765, 864
SsiI CCGC 2 cut(s) 217, 568
SspI AATATT 1 cut(s) 421
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 3 cut(s) 34, 35, 798
StyI CCWWGG 2 cut(s) 73, 136
TaaI ACNGT 2 cut(s) 356, 631
TaiI ACGT 1 cut(s) 298
TaqI TCGA 3 cut(s) 152, 259, 541
TasI AATT 6 cut(s) 342, 603, 613, 734, 765, 864
TatI WGTACW 2 cut(s) 393, 860
TauI GCSGC 1 cut(s) 571
TfiI GAWTC 1 cut(s) 486
Tru1I TTAA 2 cut(s) 435, 783
Tru9I TTAA 2 cut(s) 435, 783
TscAI CASTG 2 cut(s) 378, 597
TseI GCWGC 2 cut(s) 182, 185
TspDTI ATGAA 6 cut(s) 243, 623, 732, 747, 769, 822
TspMI CCCGGG 1 cut(s) 35
TspRI CASTG 2 cut(s) 378, 597
XapI RAATTY 1 cut(s) 734
XmaI CCCGGG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.