Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009765

Physical Location & Seq

Genomic Coordinates Forward (+)

24275991 .. 24278731

Gene Structure 2741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCTGTAACTCGGCCATGTCAGCGACAACCTGGGATTCAGAAGCGGAGAGTTGTCATAGAAAACAGCCATGGGGAGAAGCTTGTGGGGATGTTACATGATACGGGTTCCAAGGGGCTCGTTGTGTTCTGCCATGGCTTACATTCCTCAAAGGAACGCATCCCCATGGTGAACCTTGCTGCTGCATTGGAAGAGCAAGGAACAAGTGCTTTCCGCTTTGACTTTGCTGGAAATGGGGAAAGTGAAGGTTCATTTCGATACGGTAACTATCACAGAGAAGCTGATGATTTACGTGCTGTAGTTCGACACTTTCTTGGGTGCCATTATGTGATAACTGCAATTGTTGGGCACAGTAAAGGGGGAAATGCAGTTATATTGTATGGTGCAAAGTACAAGGATGTTCCTGTAGTTGTAAATATTTCTGGTCGATTTAATCTTGAAAGAGGCATTGAAGGTCGCTTAGGTAAAGATTATCTACAAAGAATCAAGAAAGATGGATTTATTGATGTGAAGAACAAAAGAGGCACATTTCAGTATCGAGCAACTCAAGAGAGTTTGTTGGAGCGGCTAGCGGTTGATATGCATGCAGCCTGCCAGTCAATTGATCAAAATTGCAGGGTTTTGACAGTTCATGGATCAATGGATAAGACTGTTCCTGTTGAAGATGCTTACGAGTACAACAAATTCATACCTAATCATAAACTATACATAGTGGAAGGAGCTGATCATGAATTCACTTCACATCAAAATGAGTTGGCTTCAATCGTGTTGGGCTTCATCAAGAAAGAATTTCACCAGGAGAAGTTTATGCTCAAGCACTCATCACTTGGCACAAGAGTAGCAGATAAATCTATTCATTCACGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Hydrolase_4 Ribosomal_S10

Protein Analysis

290

Amino Acids

32.54

Weight (kDa)

9.09

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	37 - 150	7.9e-13	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	41 - 219	4.3e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11910 AT5G11910 AT5G11910 AT5G11910
fragaria_vesca	FvH4_2g31740
malus_domestica	MD15G1058200.v1.1 MD15G1058300.v1.1
prunus_persica	Prupe.1G410900_v2.0.a1 Prupe.1G410900_v2.0.a1
pyrus_communis	pycom15g05480
rosa_chinensis	RchiOBHm_Chr6g0311081
rosa_laevigata	RLG00000010437
rosa_multiflora	Rmu_co8018994.1_g000001 Rmu_sc0008967.1_g000001 Rmu_sc0027354.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158040
rosa_rugosa	Rorug06G0385200
rosa_samantha	Rh6AG499200 Rh6CG515600 Rh6DG502200
rosa_wichuraiana	Rw6G043490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AccBSI	CCGCTC	1 cut(s)	565
AciI	CCGC	4 cut(s)	46, 214, 565, 572
AclWI	GGATC	1 cut(s)	643
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	3 cut(s)	683, 731, 788
AfaI	GTAC	2 cut(s)	392, 677
AgsI	TTSAA	4 cut(s)	440, 452, 662, 762
AjnI	CCWGG	2 cut(s)	31, 795
AleI	CACNNNNGTG	1 cut(s)	865
AluBI	AGCT	3 cut(s)	82, 281, 722
AluI	AGCT	3 cut(s)	82, 281, 722
AlwI	GGATC	1 cut(s)	643
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	3 cut(s)	179, 182, 587
ApoI	RAATTY	3 cut(s)	683, 731, 788
AsuHPI	GGTGA	2 cut(s)	181, 785
AsuNHI	GCTAGC	1 cut(s)	568
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	166, 169, 599
BccI	CCATC	1 cut(s)	488
BciT130I	CCWGG	2 cut(s)	33, 797
BclI	TGATCA	2 cut(s)	604, 724
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	2 cut(s)	297, 405
BisI	GCNGC	4 cut(s)	180, 183, 566, 588
BlsI	GCNGC	4 cut(s)	181, 184, 567, 589
Bme1390I	CCNGG	2 cut(s)	33, 797
BmiI	GGNNCC	2 cut(s)	109, 320
BmrFI	CCNGG	2 cut(s)	33, 797
BmsI	GCATC	2 cut(s)	168, 655
BmtI	GCTAGC	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	460
BpuEI	CTTGAG	2 cut(s)	531, 797
BsaAI	YACGTR	1 cut(s)	293
BsaJI	CCNNGG	5 cut(s)	32, 70, 111, 133, 165
Bse1I	ACTGG	1 cut(s)	595
BseBI	CCWGG	2 cut(s)	33, 797
BseDI	CCNNGG	5 cut(s)	32, 70, 111, 133, 165
BseGI	GGATG	4 cut(s)	96, 159, 403, 870
BseNI	ACTGG	1 cut(s)	595
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	3 cut(s)	166, 169, 599
BshFI	GGCC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	120, 351
Bsp143I	GATC	3 cut(s)	604, 635, 724
Bsp19I	CCATGG	3 cut(s)	70, 133, 165
BspACI	CCGC	4 cut(s)	46, 214, 565, 572
BspANI	GGCC	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	2 cut(s)	109, 320
BspOI	GCTAGC	1 cut(s)	572
BspPI	GGATC	1 cut(s)	643
BspQI	GCTCTTC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	318
BsrBI	CCGCTC	1 cut(s)	565
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	5 cut(s)	32, 70, 111, 133, 165
BssMI	GATC	3 cut(s)	604, 635, 724
BssT1I	CCWWGG	4 cut(s)	70, 111, 133, 165
Bst2UI	CCWGG	2 cut(s)	33, 797
Bst4CI	ACNGT	4 cut(s)	263, 353, 628, 652
Bst6I	CTCTTC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	3 cut(s)	570, 585, 592
BstDEI	CTNAG	1 cut(s)	460
BstDSI	CCRYGG	3 cut(s)	70, 133, 165
BstF5I	GGATG	4 cut(s)	96, 159, 403, 870
BstKTI	GATC	3 cut(s)	607, 638, 727
BstMBI	GATC	3 cut(s)	604, 635, 724
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	2 cut(s)	33, 797
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	31, 795
BstSFI	CTRYAG	2 cut(s)	297, 405
BstSLI	GKGCMC	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	166, 169, 599
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	3 cut(s)	70, 133, 165
BtsCI	GGATG	4 cut(s)	96, 159, 403, 870
Cac8I	GCNNGC	3 cut(s)	570, 585, 592
CciI	TCATGA	1 cut(s)	727
Csp6I	GTAC	2 cut(s)	391, 676
CviAII	CATG	8 cut(s)	18, 71, 98, 134, 166, 584, 632, 728
CviQI	GTAC	2 cut(s)	391, 676
DdeI	CTNAG	1 cut(s)	460
DpnI	GATC	3 cut(s)	606, 637, 726
DpnII	GATC	3 cut(s)	604, 635, 724
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	4 cut(s)	70, 111, 133, 165
Eco24I	GRGCYC	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	31, 795
EcoT14I	CCWWGG	4 cut(s)	70, 111, 133, 165
EcoT22I	ATGCAT	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	4 cut(s)	70, 111, 133, 165
FaeI	CATG	8 cut(s)	21, 74, 101, 137, 169, 587, 635, 731
FatI	CATG	8 cut(s)	17, 70, 97, 133, 165, 583, 631, 727
FbaI	TGATCA	2 cut(s)	604, 724
Fnu4HI	GCNGC	4 cut(s)	180, 183, 566, 588
FokI	GGATG	3 cut(s)	103, 146, 410
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	4 cut(s)	180, 183, 566, 588
FspBI	CTAG	1 cut(s)	569
GluI	GCNGC	4 cut(s)	180, 183, 566, 588
HaeIII	GGCC	1 cut(s)	16
Hin1II	CATG	8 cut(s)	21, 74, 101, 137, 169, 587, 635, 731
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	37, 483
HphI	GGTGA	2 cut(s)	181, 785
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	5 cut(s)	437, 487, 548, 728, 781
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	3 cut(s)	239, 446, 710
HpyCH4III	ACNGT	4 cut(s)	263, 353, 628, 652
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	7 cut(s)	185, 338, 368, 386, 583, 587, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	460
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	8 cut(s)	21, 74, 101, 137, 169, 587, 635, 731
Ksp22I	TGATCA	2 cut(s)	604, 724
Kzo9I	GATC	3 cut(s)	604, 635, 724
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	562, 719
Lsp1109I	GCAGC	3 cut(s)	166, 169, 599
LweI	GCATC	2 cut(s)	168, 655
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	3 cut(s)	7, 93, 263
MalI	GATC	3 cut(s)	606, 637, 726
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	3 cut(s)	604, 635, 724
MboII	GAAGA	3 cut(s)	203, 523, 674
MfeI	CAATTG	2 cut(s)	339, 600
MhlI	GDGCHC	2 cut(s)	120, 351
MluCI	AATT	6 cut(s)	339, 600, 610, 683, 731, 788
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	3 cut(s)	157, 437, 515
Mph1103I	ATGCAT	1 cut(s)	585
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	3 cut(s)	164, 747, 865
MspR9I	CCNGG	2 cut(s)	33, 797
MunI	CAATTG	2 cut(s)	339, 600
MvaI	CCWGG	2 cut(s)	33, 797
MwoI	GCNNNNNNNGC	1 cut(s)	22
NcoI	CCATGG	3 cut(s)	70, 133, 165
NdeII	GATC	3 cut(s)	604, 635, 724
NheI	GCTAGC	1 cut(s)	568
NlaIII	CATG	8 cut(s)	21, 74, 101, 137, 169, 587, 635, 731
NlaIV	GGNNCC	2 cut(s)	109, 320
NsiI	ATGCAT	1 cut(s)	585
NspI	RCATGY	1 cut(s)	587
OliI	CACNNNNGTG	1 cut(s)	865
PaeI	GCATGC	1 cut(s)	587
PagI	TCATGA	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	37, 483
PkrI	GCNGC	4 cut(s)	181, 184, 567, 589
Ppu21I	YACGTR	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	31, 795
PspGI	CCWGG	2 cut(s)	31, 795
PspN4I	GGNNCC	2 cut(s)	109, 320
RsaI	GTAC	2 cut(s)	392, 677
RsaNI	GTAC	2 cut(s)	391, 676
RseI	CAYNNNNRTG	3 cut(s)	164, 747, 865
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	4 cut(s)	180, 183, 566, 588
Sau3AI	GATC	3 cut(s)	604, 635, 724
ScrFI	CCNGG	2 cut(s)	33, 797
SduI	GDGCHC	2 cut(s)	120, 351
SfaNI	GCATC	2 cut(s)	168, 655
SfcI	CTRYAG	2 cut(s)	297, 405
SmiMI	CAYNNNNRTG	3 cut(s)	164, 747, 865
SmlI	CTYRAG	2 cut(s)	546, 812
SmoI	CTYRAG	2 cut(s)	546, 812
SphI	GCATGC	1 cut(s)	587
Sse9I	AATT	6 cut(s)	339, 600, 610, 683, 731, 788
SsiI	CCGC	4 cut(s)	46, 214, 565, 572
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	1 cut(s)	569
StyD4I	CCNGG	2 cut(s)	31, 795
StyI	CCWWGG	4 cut(s)	70, 111, 133, 165
TaaI	ACNGT	4 cut(s)	263, 353, 628, 652
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	4 cut(s)	256, 304, 427, 538
TasI	AATT	6 cut(s)	339, 600, 610, 683, 731, 788
TatI	WGTACW	2 cut(s)	390, 675
TauI	GCSGC	1 cut(s)	568
TfiI	GAWTC	2 cut(s)	37, 483
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseI	GCWGC	3 cut(s)	179, 182, 587
TspDTI	ATGAA	6 cut(s)	240, 620, 676, 744, 766, 845
XapI	RAATTY	3 cut(s)	683, 731, 788
XceI	RCATGY	1 cut(s)	587
XspI	CTAG	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.