Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009765

Physical Location & Seq

Genomic Coordinates Forward (+)

3910832 .. 3911770

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1058300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTTGAAGTTACTGCTGACATGTTTCTTGCAGGGGGGAATGCAGTGATCTTGTATGCTGCAAAATACAGTGATGTTCGTGCGGTTGTAAATATTTCTGGCCGATTTGATCTGGAAAGAGGCATGGAAGGTCGCTTAGGTAAAGATTTTCAACAGAGAATCAAGCAAGATGGATTTATTGACGTTAAGAACAGAAGAGGTACATTTCAGTATCGTGTCACCGAAGAAAGTTTGATAGAGCGTCTAAGAACTGATATGCGTGCAGCCTGCCAATCAATTAATCAAAATTGCAGGGTTTTGACAGTTCATGGATCAAATGATAAAATTGTTCCTTTTGAAGATGCTTTTGAGTTTGACAAGATTATACCTAATCACAAAGTATCGATCGTGGAAGGAGCTGATCACGAATACACTTTACACCAAAACGAGCTGGCTTCGATCGTGTTGGACTTCATTAAGGAAGATTTTCACCAGGACATGGATCTGTCTAAGCAATCACCATCTAGCACAAGAGCCGATAAATCTCTCGATTCACGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Hydrolase_4 Ribosomal_S10

Protein Analysis

181

Amino Acids

20.55

Weight (kDa)

5.55

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11910 AT5G11910 AT5G11910 AT5G11910
fragaria_vesca	FvH4_2g31740
malus_domestica	MD15G1058200.v1.1 MD15G1058300.v1.1
prunus_persica	Prupe.1G410900_v2.0.a1 Prupe.1G410900_v2.0.a1
pyrus_communis	pycom15g05480
rosa_chinensis	RchiOBHm_Chr6g0311081
rosa_laevigata	RLG00000010437
rosa_multiflora	Rmu_co8018994.1_g000001 Rmu_sc0008967.1_g000001 Rmu_sc0027354.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158040
rosa_rugosa	Rorug06G0385200
rosa_samantha	Rh6AG499200 Rh6CG515600 Rh6DG502200
rosa_wichuraiana	Rw6G043490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	478
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	319, 489
AcoI	YGGCCR	1 cut(s)	100
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	478
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	8, 152, 338
AjnI	CCWGG	1 cut(s)	471
AleI	CACNNNNGTG	1 cut(s)	538
AluBI	AGCT	2 cut(s)	398, 430
AluI	AGCT	2 cut(s)	398, 430
AlwI	GGATC	2 cut(s)	319, 489
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	59, 263
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	465
AsuHPI	GGTGA	3 cut(s)	211, 461, 489
BbvI	GCAGC	2 cut(s)	46, 275
BccI	CCATC	2 cut(s)	164, 508
BciT130I	CCWGG	1 cut(s)	473
BclI	TGATCA	1 cut(s)	400
BfaI	CTAG	1 cut(s)	504
BisI	GCNGC	2 cut(s)	60, 264
BlsI	GCNGC	2 cut(s)	61, 265
Bme1390I	CCNGG	1 cut(s)	473
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	136
Bsa29I	ATCGAT	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	473
BseCI	ATCGAT	1 cut(s)	383
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	46, 275
BsgI	GTGCAG	1 cut(s)	282
Bsh1285I	CGRYCG	2 cut(s)	387, 441
BshFI	GGCC	1 cut(s)	102
BshVI	ATCGAT	1 cut(s)	383
BsiEI	CGRYCG	2 cut(s)	387, 441
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	7 cut(s)	48, 109, 311, 384, 400, 438, 481
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	383
BspPI	GGATC	2 cut(s)	319, 489
BssMI	GATC	7 cut(s)	48, 109, 311, 384, 400, 438, 481
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	2 cut(s)	71, 304
Bst6I	CTCTTC	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	261, 268, 432
BstDEI	CTNAG	3 cut(s)	136, 245, 489
BstKTI	GATC	7 cut(s)	51, 112, 314, 387, 403, 441, 484
BstMBI	GATC	7 cut(s)	48, 109, 311, 384, 400, 438, 481
BstMCI	CGRYCG	2 cut(s)	387, 441
BstNI	CCWGG	1 cut(s)	473
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	46, 275
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
Bsu15I	ATCGAT	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	383
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 76
Cac8I	GCNNGC	3 cut(s)	261, 268, 432
ClaI	ATCGAT	1 cut(s)	383
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	4 cut(s)	22, 124, 308, 478
CviJI	RGCY	6 cut(s)	102, 266, 398, 430, 434, 515
CviKI_1	RGCY	6 cut(s)	102, 266, 398, 430, 434, 515
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	3 cut(s)	136, 245, 489
DpnI	GATC	7 cut(s)	50, 111, 313, 386, 402, 440, 483
DpnII	GATC	7 cut(s)	48, 109, 311, 384, 400, 438, 481
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	471
FaeI	CATG	4 cut(s)	25, 127, 311, 481
FaiI	YATR	7 cut(s)	23, 57, 125, 257, 309, 365, 479
FatI	CATG	4 cut(s)	21, 123, 307, 477
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	2 cut(s)	60, 264
Fsp4HI	GCNGC	2 cut(s)	60, 264
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	2 cut(s)	60, 264
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	25, 127, 311, 481
HinfI	GANTC	2 cut(s)	159, 530
HphI	GGTGA	3 cut(s)	211, 461, 489
Hpy188III	TCNNGA	4 cut(s)	113, 404, 527, 534
HpyAV	CCTTC	2 cut(s)	122, 386
HpyCH4III	ACNGT	2 cut(s)	71, 304
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	32, 44, 62, 263, 291
HpyF3I	CTNAG	3 cut(s)	136, 245, 489
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	25, 127, 311, 481
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	7 cut(s)	48, 109, 311, 384, 400, 438, 481
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	8 cut(s)	18, 84, 98, 277, 280, 416, 458, 485
Lsp1109I	GCAGC	2 cut(s)	46, 275
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	10, 217
MalI	GATC	7 cut(s)	50, 111, 313, 386, 402, 440, 483
MboI	GATC	7 cut(s)	48, 109, 311, 384, 400, 438, 481
MboII	GAAGA	4 cut(s)	207, 236, 350, 473
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	3 cut(s)	276, 286, 324
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	2 cut(s)	113, 191
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	3 cut(s)	186, 279, 456
MslI	CAYNNNNRTG	1 cut(s)	538
MspR9I	CCNGG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	473
NdeII	GATC	7 cut(s)	48, 109, 311, 384, 400, 438, 481
NlaIII	CATG	4 cut(s)	25, 127, 311, 481
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	538
PciI	ACATGT	1 cut(s)	21
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	159, 530
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	61, 265
Ple19I	CGATCG	2 cut(s)	387, 441
PscI	ACATGT	1 cut(s)	21
PshBI	ATTAAT	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	481
PvuI	CGATCG	2 cut(s)	387, 441
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	538
SaqAI	TTAA	3 cut(s)	186, 279, 456
SatI	GCNGC	2 cut(s)	60, 264
Sau3AI	GATC	7 cut(s)	48, 109, 311, 384, 400, 438, 481
ScrFI	CCNGG	1 cut(s)	473
SetI	ASST	7 cut(s)	133, 142, 186, 202, 370, 400, 432
SfaNI	GCATC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	538
Sse9I	AATT	3 cut(s)	276, 286, 324
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	71, 304
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	383, 437, 528
TasI	AATT	3 cut(s)	276, 286, 324
TfiI	GAWTC	2 cut(s)	159, 530
Tru1I	TTAA	3 cut(s)	186, 279, 456
Tru9I	TTAA	3 cut(s)	186, 279, 456
TscAI	CASTG	2 cut(s)	51, 76
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	59, 263
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	296, 442
TspRI	CASTG	2 cut(s)	51, 76
Van91I	CCANNNNNTGG	1 cut(s)	478
VspI	ATTAAT	1 cut(s)	279
XceI	RCATGY	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.