Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009765

Physical Location & Seq

Genomic Coordinates Forward (+)

3268489 .. 3270391

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05480.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCGGTGACTCGGCCGACTCCGACTCAGAAGCAACCAGTTACTCAACAGCGCAGGATTGTTGTAGAAAACAAGCATGGGGAGAAGCTTGTCGGGATATTACATGAGAGGGGTTCGAAGGATCTCGTTGTGGTGTGCCATGGCATCCACTCATCAAAGGAACGCATTCCCATGGTGAACATTGCCGCTGTGTTAGAAAACGATGGTATAAGCGCCTTCCGCTTTGACTTCGCTGGAAACGGGGAAAGTGAAGGTTTGTTTCGATATGGTCACTATCGAAGAGAAGCTGATGATATACGCGCTGTAGTTCAATACTTTCGTGGGAAGGATTATGTAGTAACTGCAGTTGTTGGTCACAGTAAAGGGGGGAATGCAGTGATCTTGTATGCTGCAAAATACAGTGATGTTCGTGCAGTTGTAAATATTTCTGGCCGATTTGATCTGGAAAGAGGCATGGAAGGTCGCTTAGGTAAAGATTTTCGACAAAGAATCAAGCGAGATGGATTTATTGACGTTAAGAACAGAAGAGGTACATATCAGTATCGTGTCACCGAAGAAAGTTTGATAGAGCGTCTAACAACTGATATGAGTGCAGCCTGCCAATCGATTAATCAAAATTGCAGGGTTTTGACAGTTCATGGATCAAATGATAAAATTGTTCCTTTTGAAGATGCTTTTGCGTTTGACAAGATTATACCTAATCACAAAGTATCGATCGTGGAAGGAGCTGATCACGAATACACTTTACACCAAAACGAGCTGGCTTCGATCGTGTTGGACTTCATCAAGGAAGATTTTCACCAGGACATGGATCTGTCTAAGCAGTCACCATCTAGCACAAGAGCCGATAAATCTCTCGATTCACGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Hydrolase_4 Ribosomal_S10

Protein Analysis

291

Amino Acids

32.77

Weight (kDa)

8.34

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11910 AT5G11910 AT5G11910 AT5G11910
fragaria_vesca	FvH4_2g31740
malus_domestica	MD15G1058200.v1.1 MD15G1058300.v1.1
prunus_persica	Prupe.1G410900_v2.0.a1 Prupe.1G410900_v2.0.a1
pyrus_communis	pycom15g05480
rosa_chinensis	RchiOBHm_Chr6g0311081
rosa_laevigata	RLG00000010437
rosa_multiflora	Rmu_co8018994.1_g000001 Rmu_sc0008967.1_g000001 Rmu_sc0027354.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158040
rosa_rugosa	Rorug06G0385200
rosa_samantha	Rh6AG499200 Rh6CG515600 Rh6DG502200
rosa_wichuraiana	Rw6G043490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	808
AccII	CGCG	1 cut(s)	300
AciI	CCGC	2 cut(s)	186, 220
AclWI	GGATC	3 cut(s)	129, 649, 819
AcoI	YGGCCR	2 cut(s)	14, 430
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	1 cut(s)	808
AgsI	TTSAA	2 cut(s)	311, 668
AjnI	CCWGG	1 cut(s)	801
AleI	CACNNNNGTG	1 cut(s)	868
AluBI	AGCT	4 cut(s)	88, 287, 728, 760
AluI	AGCT	4 cut(s)	88, 287, 728, 760
AlwI	GGATC	3 cut(s)	129, 649, 819
AoxI	GGCC	2 cut(s)	14, 430
ApeKI	GCWGC	2 cut(s)	389, 593
AseI	ATTAAT	1 cut(s)	609
Asp700I	GAANNNNTTC	2 cut(s)	165, 795
AspLEI	GCGC	3 cut(s)	54, 215, 302
AsuHPI	GGTGA	5 cut(s)	19, 187, 541, 791, 819
AsuII	TTCGAA	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	376, 605
BccI	CCATC	3 cut(s)	197, 494, 838
BciT130I	CCWGG	1 cut(s)	803
BclI	TGATCA	1 cut(s)	730
BfaI	CTAG	1 cut(s)	834
BfmI	CTRYAG	2 cut(s)	303, 342
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	3 cut(s)	186, 390, 594
BlsI	GCNGC	3 cut(s)	187, 391, 595
Bme1390I	CCNGG	1 cut(s)	803
BmrFI	CCNGG	1 cut(s)	803
BmsI	GCATC	2 cut(s)	153, 661
Bpu10I	CCTNAGC	1 cut(s)	466
Bpu14I	TTCGAA	1 cut(s)	116
Bsa29I	ATCGAT	2 cut(s)	605, 713
BsaJI	CCNNGG	2 cut(s)	139, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	808
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	803
BseCI	ATCGAT	2 cut(s)	605, 713
BseDI	CCNNGG	2 cut(s)	139, 171
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	808
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	38
BseX3I	CGGCCG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	376, 605
BsgI	GTGCAG	2 cut(s)	432, 612
Bsh1236I	CGCG	1 cut(s)	300
Bsh1285I	CGRYCG	3 cut(s)	17, 717, 771
BshFI	GGCC	2 cut(s)	16, 432
BshVI	ATCGAT	2 cut(s)	605, 713
BsiEI	CGRYCG	3 cut(s)	17, 717, 771
BslI	CCNNNNNNNGG	1 cut(s)	808
BsmI	GAATGC	2 cut(s)	165, 376
BsnI	GGCC	2 cut(s)	16, 432
Bsp119I	TTCGAA	1 cut(s)	116
Bsp143I	GATC	8 cut(s)	121, 378, 439, 641, 714, 730, 768, 811
Bsp19I	CCATGG	2 cut(s)	139, 171
BspACI	CCGC	2 cut(s)	186, 220
BspANI	GGCC	2 cut(s)	16, 432
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	2 cut(s)	605, 713
BspFNI	CGCG	1 cut(s)	300
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	3 cut(s)	129, 649, 819
BspT104I	TTCGAA	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	139, 171
BssMI	GATC	8 cut(s)	121, 378, 439, 641, 714, 730, 768, 811
BssT1I	CCWWGG	2 cut(s)	139, 171
Bst2UI	CCWGG	1 cut(s)	803
Bst4CI	ACNGT	3 cut(s)	359, 401, 634
Bst6I	CTCTTC	2 cut(s)	274, 520
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	598, 762
BstDEI	CTNAG	3 cut(s)	27, 466, 819
BstDSI	CCRYGG	2 cut(s)	139, 171
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	3 cut(s)	54, 215, 302
BstKTI	GATC	8 cut(s)	124, 381, 442, 644, 717, 733, 771, 814
BstMBI	GATC	8 cut(s)	121, 378, 439, 641, 714, 730, 768, 811
BstMCI	CGRYCG	3 cut(s)	17, 717, 771
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	803
BstSCI	CCNGG	1 cut(s)	801
BstSFI	CTRYAG	2 cut(s)	303, 342
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	376, 605
BstX2I	RGATCY	2 cut(s)	121, 811
BstYI	RGATCY	2 cut(s)	121, 811
BstZI	CGGCCG	1 cut(s)	14
Bsu15I	ATCGAT	2 cut(s)	605, 713
BsuRI	GGCC	2 cut(s)	16, 432
BsuTUI	ATCGAT	2 cut(s)	605, 713
BtgI	CCRYGG	2 cut(s)	139, 171
BtsCI	GGATG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	381, 406
Cac8I	GCNNGC	2 cut(s)	598, 762
CfoI	GCGC	3 cut(s)	54, 215, 302
ClaI	ATCGAT	2 cut(s)	605, 713
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	7 cut(s)	77, 104, 140, 172, 454, 638, 808
CviJI	RGCY	9 cut(s)	16, 88, 287, 432, 596, 728, 760, 764, 845
CviKI_1	RGCY	9 cut(s)	16, 88, 287, 432, 596, 728, 760, 764, 845
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	27, 466, 819
DpnI	GATC	8 cut(s)	123, 380, 441, 643, 716, 732, 770, 813
DpnII	GATC	8 cut(s)	121, 378, 439, 641, 714, 730, 768, 811
EaeI	YGGCCR	2 cut(s)	14, 430
EagI	CGGCCG	1 cut(s)	14
Eam1104I	CTCTTC	2 cut(s)	274, 520
EarI	CTCTTC	2 cut(s)	274, 520
EclXI	CGGCCG	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	139, 171
Eco52I	CGGCCG	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	801
EcoT14I	CCWWGG	2 cut(s)	139, 171
ErhI	CCWWGG	2 cut(s)	139, 171
FaeI	CATG	7 cut(s)	80, 107, 143, 175, 457, 641, 811
FatI	CATG	7 cut(s)	76, 103, 139, 171, 453, 637, 807
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	3 cut(s)	186, 390, 594
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	186, 390, 594
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	3 cut(s)	53, 214, 301
GluI	GCNGC	3 cut(s)	186, 390, 594
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	16, 432
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	3 cut(s)	54, 215, 302
Hin1II	CATG	7 cut(s)	80, 107, 143, 175, 457, 641, 811
Hin6I	GCGC	3 cut(s)	52, 213, 300
HinP1I	GCGC	3 cut(s)	52, 213, 300
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	5 cut(s)	10, 19, 25, 489, 860
HphI	GGTGA	5 cut(s)	19, 187, 541, 791, 819
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	24, 30
Hpy188III	TCNNGA	5 cut(s)	94, 443, 734, 857, 864
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	6 cut(s)	112, 226, 245, 319, 452, 716
HpyCH4III	ACNGT	3 cut(s)	359, 401, 634
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	6 cut(s)	344, 374, 392, 413, 593, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	3 cut(s)	27, 466, 819
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	7 cut(s)	80, 107, 143, 175, 457, 641, 811
HspAI	GCGC	3 cut(s)	52, 213, 300
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	8 cut(s)	121, 378, 439, 641, 714, 730, 768, 811
LmnI	GCTCC	1 cut(s)	725
Lsp1109I	GCAGC	2 cut(s)	376, 605
LweI	GCATC	2 cut(s)	153, 661
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	7 cut(s)	7, 40, 269, 337, 353, 547, 825
MalI	GATC	8 cut(s)	123, 380, 441, 643, 716, 732, 770, 813
MboI	GATC	8 cut(s)	121, 378, 439, 641, 714, 730, 768, 811
MboII	GAAGA	5 cut(s)	291, 537, 566, 680, 803
MflI	RGATCY	2 cut(s)	121, 811
MluCI	AATT	2 cut(s)	616, 654
MlyI	GAGTC	3 cut(s)	4, 13, 19
MmeI	TCCRAC	2 cut(s)	47, 756
MnlI	CCTC	3 cut(s)	102, 443, 521
MroXI	GAANNNNTTC	2 cut(s)	165, 795
MseI	TTAA	2 cut(s)	516, 609
MslI	CAYNNNNRTG	2 cut(s)	170, 868
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	803
Mva1269I	GAATGC	2 cut(s)	165, 376
MvaI	CCWGG	1 cut(s)	803
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	219
NcoI	CCATGG	2 cut(s)	139, 171
NdeII	GATC	8 cut(s)	121, 378, 439, 641, 714, 730, 768, 811
NlaIII	CATG	7 cut(s)	80, 107, 143, 175, 457, 641, 811
NmuCI	GTSAC	5 cut(s)	7, 269, 353, 547, 825
NspV	TTCGAA	1 cut(s)	116
OliI	CACNNNNGTG	1 cut(s)	868
PctI	GAATGC	2 cut(s)	165, 376
PdmI	GAANNNNTTC	2 cut(s)	165, 795
PfeI	GAWTC	2 cut(s)	489, 860
PflMI	CCANNNNNTGG	1 cut(s)	808
PkrI	GCNGC	3 cut(s)	187, 391, 595
Ple19I	CGATCG	2 cut(s)	717, 771
PleI	GAGTC	3 cut(s)	4, 13, 19
PpsI	GAGTC	3 cut(s)	4, 13, 19
PshBI	ATTAAT	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	801
PspGI	CCWGG	1 cut(s)	801
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	2 cut(s)	121, 811
PvuI	CGATCG	2 cut(s)	717, 771
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
RseI	CAYNNNNRTG	2 cut(s)	170, 868
SaqAI	TTAA	2 cut(s)	516, 609
SatI	GCNGC	3 cut(s)	186, 390, 594
Sau3AI	GATC	8 cut(s)	121, 378, 439, 641, 714, 730, 768, 811
SchI	GAGTC	3 cut(s)	4, 13, 19
ScrFI	CCNGG	1 cut(s)	803
SfaNI	GCATC	2 cut(s)	153, 661
SfcI	CTRYAG	2 cut(s)	303, 342
SfuI	TTCGAA	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	170, 868
Sse9I	AATT	2 cut(s)	616, 654
SsiI	CCGC	2 cut(s)	186, 220
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	1 cut(s)	834
StyD4I	CCNGG	1 cut(s)	801
StyI	CCWWGG	2 cut(s)	139, 171
TaaI	ACNGT	3 cut(s)	359, 401, 634
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	8 cut(s)	116, 262, 277, 481, 605, 713, 767, 858
TasI	AATT	2 cut(s)	616, 654
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	489, 860
Tru1I	TTAA	2 cut(s)	516, 609
Tru9I	TTAA	2 cut(s)	516, 609
TscAI	CASTG	2 cut(s)	381, 406
TseFI	GTSAC	5 cut(s)	7, 269, 353, 547, 825
TseI	GCWGC	2 cut(s)	389, 593
Tsp45I	GTSAC	5 cut(s)	7, 269, 353, 547, 825
TspDTI	ATGAA	2 cut(s)	626, 772
TspRI	CASTG	2 cut(s)	381, 406
Van91I	CCANNNNNTGG	1 cut(s)	808
VspI	ATTAAT	1 cut(s)	609
XmnI	GAANNNNTTC	2 cut(s)	165, 795
XspI	CTAG	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.