AT5G12100

Pentacotripeptide-repeat region of PRORP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010490
Physical Location & Seq
Forward (+)
3911334 .. 3914167
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G12100.1

Sequence Viewer

Length: 2451 bp
ATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCACCGTCAAGTTCACTGACTCTGTCTCAGCATGCTCATGTCGTCGTCTCTTCTCTGCCTCCACCGACCCCGAACCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCACCGGAGACGAAAAGCTACGGAATCTCCGAGTTCTTCTCCAGCAGAATCGAATCGAAACGGCGCGTGGCGTTCTCTCTTCGCTGCTTCGATCGGATTCTACGCCTTTCGCATCGCCGAAAGAGCTCTTCTCCGCCTTCTCGTTATCATCTCCGTCGTTGAAACACGATTTCTCCTACTTGCTTCTCTCCGTGCTACTAAACGAATCGAAGATGATTTCTGAAGCTGCGGATTTGTTTTTCGCTTTGAGGAATGAAGGTATTTATCCCAGCTCAGATTCGTTAACGCTTTTGCTTGATCATCTTGTGAAGACGAAACAATTCAGAGTGACTATAAACGTGTTTTTGAACATTCTCGAATCTGATTTTCGTCCGAGTAAGTTCATGTATGGGAAAGCAATTCAAGCTGCTGTGAAATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAACCGGATGAAGCACGATAGAATCTATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGATTGTGTAAAGGGAAAAGGATGAATGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAGAAGATTGTTACCTTCTTTGATAACGTATAACACGTTGATTGATGGATATTGCAAAGCTGGGAATCCGGAAAAGAGTTTTAAAGTGAGAGAACGTATGAAAGCGGATCATATCGAACCGAGTCTTATTACGTTTAATACTTTGCTTAAGGGGCTGTTTAAAGCTGGAATGGTGGAAGATGCAGAGAATGTTTTGAAGGAAATGAAGGATCTGGGGTTTGTACCAGATGCTTTCACCTTCAGTATTCTGTTTGATGGTTATTCGAGTAACGAGAAAGCTGAGGCTGCGTTGGGTGTTTATGAGACTGCGGTTGATTCTGGCGTGAAAATGAATGCTTATACTTGTAGCATTTTGTTGAATGCGTTGTGCAAAGAAGGAAAGATCGAGAAAGCGGAAGAGATTTTGGGGAGAGAGATGGCTAAGGGGCTTGTCCCGAACGAGGTTATTTATAACACTATGATTGATGGATACTGTCGAAAAGGTGATCTGGTTGGTGCTCGTATGAAAATTGAAGCAATGGAGAAACAAGGGATGAAGCCAGATCATTTGGCGTATAATTGTTTGATTAGGAGATTTTGTGAATTGGGGGAAATGGAGAATGCTGAGAAAGAGGTTAACAAAATGAAACTGAAGGGAGTTTCTCCTAGCGTGGAGACATATAACATCCTGATTGGGGGCTATGGGAGAAAATATGAATTTGATAAGTGCTTCGACATTCTTAAAGAAATGGAAGATAACGGGACAATGCCGAATGTAGTTAGCTATGGAACTCTGATAAATTGTTTGTGCAAAGGTTCTAAACTTCTTGAAGCTCAGATTGTTAAGAGGGATATGGAAGATAGAGGGGTTTCACCGAAAGTAAGGATATATAACATGCTAATCGATGGTTGTTGCTCAAAGGGGAAGATAGAAGACGCTTTCCGGTTTTCTAAGGAGATGCTCAAAAAGGGAATAGAATTAAACCTGGTGACTTATAACACCCTCATTGATGGGTTGTCCATGACCGGAAAATTATCAGAAGCTGAAGACTTACTTCTTGAAATCTCAAGAAAGGGTCTCAAACCAGATGTATTCACGTATAACTCACTAATATCTGGATATGGATTCGCTGGAAACGTGCAAAGATGTATCGCGCTCTATGAAGAGATGAAGAGATCAGGAATAAAACCCACTCTGAAGACATATCATCTTTTGATCAGTTTGTGTACCAAGGAGGGGATAGAGCTCACAGAGAGATTATTTGGAGAGATGTCATTGAAACCAGACTTATTAGTTTACAATGGGGTTCTCCATTGCTACGCCGTACATGGAGACATGGAAAAGGCTTTTAATTTGCAGAAGCAGATGATTGAAAAGAGTATCGGTTTGGATAAGACAACCTATAACAGCTTGATTCTGGGACAACTGAAGGTAGGAAAACTGTGCGAGGTTAGGAGTTTGATTGACGAGATGAATGCCCGGGAAATGGAACCTGAAGCTGATACATATAACATAATAGTGAAAGGGCATTGCGAGGTGAAAGATTATATGAGTGCATATGTTTGGTACAGAGAGATGCAAGAGAAGGGTTTTCTGTTAGATGTTTGCATAGGCAACGAGCTAGTGAGTGGGCTTAAAGAAGAATGGAGGTCAAAGGAGGCAGAGATTGTCATTTCTGAGATGAATGGTCGCATGCTAGGTGATGTAACAGTGGATGAAGATCTATCTGCAACAGAGAAGCTTTGA

Protein Analysis

816

Amino Acids

91.92

Weight (kDa)

5.97

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 180 - 226 7.5e-07 PPR repeat family
PPR_long PF17177 187 - 331 1.1e-11 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 210 - 240 2.7e-10 PPR repeat
PPR_2 PF13041 212 - 258 1.4e-14 PPR repeat family
PPR PF01535 216 - 243 6.4e-07 PPR repeat
PPR_3 PF13812 236 - 292 1.3e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 245 - 276 1.3e-10 PPR repeat
PPR_2 PF13041 247 - 296 1.6e-14 PPR repeat family
TPR_24 PF23276 249 - 344 1.2e-06 Fungal tetratrico peptide repeats
PPR PF01535 250 - 278 1.9e-08 PPR repeat
PPR_1 PF12854 279 - 311 1.3e-09 PPR repeat
PPR_2 PF13041 282 - 330 2.8e-15 PPR repeat family
PPR PF01535 285 - 315 2e-07 PPR repeat
PPR_2 PF13041 325 - 366 2.3e-07 PPR repeat family
PPR_long PF17177 330 - 465 1.4e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 343 - 398 3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 383 - 408 3e-09 PPR repeat
PPR_2 PF13041 387 - 435 6.4e-13 PPR repeat family
PPR_3 PF13812 413 - 470 5e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 419 - 451 6.7e-06 PPR repeat
PPR_2 PF13041 425 - 470 3.5e-12 PPR repeat family
PPR_long PF17177 446 - 544 3.5e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 457 - 506 2e-14 PPR repeat family
PPR PF01535 461 - 489 3.5e-06 PPR repeat
PPR_1 PF12854 489 - 521 4.7e-06 PPR repeat
PPR_3 PF13812 516 - 572 1.3e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 518 - 625 1.9e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 523 - 555 2.8e-09 PPR repeat
PPR_2 PF13041 527 - 574 2.1e-16 PPR repeat family
PPR PF01535 531 - 560 7.7e-06 PPR repeat
PPR_long PF17177 532 - 649 7.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 558 - 587 7.2e-07 PPR repeat
PPR_2 PF13041 563 - 609 5.2e-14 PPR repeat family
PPR PF01535 565 - 595 2e-06 PPR repeat
PPR_3 PF13812 586 - 646 2.1e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 593 - 626 3.2e-09 PPR repeat
PPR_2 PF13041 597 - 644 5.2e-14 PPR repeat family
PPR PF01535 600 - 630 3e-08 PPR repeat
PPR_2 PF13041 663 - 707 4.5e-08 PPR repeat family
PPR_2 PF13041 701 - 746 1.3e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010490)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12100
fragaria_vesca FvH4_6g17750 FvH4_6g17750 FvH4_6g17750 FvH4_6g17750
malus_domestica MD12G1016300.v1.1 MD14G1014400.v1.1
prunus_persica Prupe.7G119000_v2.0.a1
pyrus_communis pycom12g01340 pycom14g01210
rosa_chinensis RchiOBHm_Chr3g0471971
rosa_laevigata RLG00000024115
rosa_multiflora Rmu_sc0000090.1_g000022
rosa_roxburghii Rroxscaffold_6G00409400
rosa_rugosa Rorug03G0121400
rosa_samantha Rh3AG172800 Rh3BG198300 Rh3CG189400 Rh3CG196800 Rh3DG176100
rosa_wichuraiana Rw3G016780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1176, 1701
AccII CGCG 2 cut(s) 223, 1859
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 6 cut(s) 143, 291, 386, 830, 1034, 1118
AclWI GGATC 2 cut(s) 840, 942
AcsI RAATTY 1 cut(s) 1421
AcuI CTGAAG 7 cut(s) 399, 949, 1376, 1770, 1922, 2153, 2220
AfaI GTAC 4 cut(s) 948, 1933, 2031, 2273
AfiI CCNNNNNNNGG 5 cut(s) 161, 1165, 1399, 1941, 2191
AflII CTTAAG 2 cut(s) 13, 872
AflIII ACRYGT 2 cut(s) 495, 759
AjnI CCWGG 1 cut(s) 1689
Alw21I GWGCWC 3 cut(s) 285, 1225, 1953
Alw26I GTCTC 7 cut(s) 73, 95, 159, 1022, 1373, 1787, 2031
AlwI GGATC 2 cut(s) 840, 942
AlwNI CAGNNNCTG 1 cut(s) 1748
Ama87I CYCGRG 1 cut(s) 2184
Aor13HI TCCGGA 1 cut(s) 793
ApeKI GCWGC 4 cut(s) 241, 383, 563, 1010
ApoI RAATTY 1 cut(s) 1421
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 2 cut(s) 223, 1861
AsuC2I CCSGG 2 cut(s) 2185, 2186
AsuHPI GGTGA 8 cut(s) 16, 151, 952, 1220, 1569, 1705, 2254, 2417
AvaI CYCGRG 1 cut(s) 2184
BanII GRGCYC 2 cut(s) 285, 1953
BbsI GAAGAC 4 cut(s) 473, 1644, 1758, 1910
Bbv12I GWGCWC 3 cut(s) 285, 1225, 1953
BbvCI CCTCAGC 1 cut(s) 1005
BbvI GCAGC 4 cut(s) 228, 370, 550, 997
BccI CCATC 7 cut(s) 659, 764, 974, 1135, 1184, 1604, 1709
BceAI ACGGC 2 cut(s) 234, 2012
BcgI CGANNNNNNTGC 4 cut(s) 704, 738, 2162, 2196
BciT130I CCWGG 1 cut(s) 1691
BciVI GTATCC 1 cut(s) 1187
BclI TGATCA 2 cut(s) 454, 1920
BcnI CCSGG 2 cut(s) 2185, 2186
BcoDI GTCTC 7 cut(s) 73, 95, 159, 1022, 1373, 1787, 2031
BfaI CTAG 3 cut(s) 1371, 2327, 2402
BfrI CTTAAG 2 cut(s) 13, 872
BfuI GTATCC 1 cut(s) 1187
BglII AGATCT 2 cut(s) 29, 2425
BisI GCNGC 4 cut(s) 242, 384, 564, 1011
BlsI GCNGC 4 cut(s) 243, 385, 565, 1012
Bme1390I CCNGG 3 cut(s) 1691, 2185, 2186
BmeT110I CYCGRG 1 cut(s) 2184
BmiI GGNNCC 1 cut(s) 2196
BmrFI CCNGG 3 cut(s) 1691, 2185, 2186
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 6 cut(s) 278, 685, 895, 943, 1653, 2271
BmuI ACTGGG 1 cut(s) 630
BpiI GAAGAC 4 cut(s) 473, 1644, 1758, 1910
BplI GAGNNNNNCTC 6 cut(s) 19, 51, 180, 212, 272, 304
BpmI CTGGAG 1 cut(s) 182
Bpu10I CCTNAGC 2 cut(s) 1005, 1146
BpuEI CTTGAG 1 cut(s) 1756
BpuMI CCSGG 2 cut(s) 2185, 2186
Bsa29I ATCGAT 1 cut(s) 1608
BsaAI YACGTR 1 cut(s) 1803
BsaBI GATNNNNATC 1 cut(s) 2424
BsaI GGTCTC 1 cut(s) 1787
BsaJI CCNNGG 2 cut(s) 1935, 2184
BsaWI WCCGGW 5 cut(s) 161, 609, 793, 1647, 1730
BsaXI ACNNNNNCTCC 6 cut(s) 168, 198, 314, 344, 1288, 1318
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 1165, 1399, 1941, 2191
Bse1I ACTGG 1 cut(s) 636
Bse3DI GCAATG 3 cut(s) 1248, 2017, 2233
Bse8I GATNNNNATC 1 cut(s) 2424
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 1 cut(s) 1691
BseCI ATCGAT 1 cut(s) 1608
BseDI CCNNGG 2 cut(s) 1935, 2184
BseGI GGATG 5 cut(s) 618, 693, 1263, 1389, 2425
BseJI GATNNNNATC 1 cut(s) 2424
BseLI CCNNNNNNNGG 5 cut(s) 161, 1165, 1399, 1941, 2191
BseMI GCAATG 3 cut(s) 1248, 2017, 2233
BseMII CTCAG 6 cut(s) 84, 444, 996, 1320, 1553, 2373
BseNI ACTGG 1 cut(s) 636
BseXI GCAGC 4 cut(s) 228, 370, 550, 997
BseYI CCCAGC 2 cut(s) 425, 785
Bsh1236I CGCG 2 cut(s) 223, 1859
Bsh1285I CGRYCG 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 1608
BsiEI CGRYCG 1 cut(s) 251
BsiHKAI GWGCWC 3 cut(s) 285, 1225, 1953
BsiHKCI CYCGRG 1 cut(s) 2184
BsiSI CCGG 6 cut(s) 162, 610, 794, 1648, 1731, 2185
BslFI GGGAC 3 cut(s) 1142, 1480, 2139
BslI CCNNNNNNNGG 5 cut(s) 161, 1165, 1399, 1941, 2191
BsmAI GTCTC 7 cut(s) 73, 95, 159, 1022, 1373, 1787, 2031
BsmBI CGTCTC 2 cut(s) 95, 159
BsmFI GGGAC 3 cut(s) 1142, 1480, 2139
BsmI GAATGC 4 cut(s) 1063, 1090, 1330, 2185
Bso31I GGTCTC 1 cut(s) 1787
BsoBI CYCGRG 1 cut(s) 2184
Bsp1286I GDGCHC 3 cut(s) 285, 1225, 1953
Bsp13I TCCGGA 1 cut(s) 793
BspACI CCGC 6 cut(s) 143, 291, 386, 830, 1034, 1118
BspCNI CTCAG 6 cut(s) 83, 443, 997, 1321, 1552, 2374
BspDI ATCGAT 1 cut(s) 1608
BspEI TCCGGA 1 cut(s) 793
BspFNI CGCG 2 cut(s) 223, 1859
BspLI GGNNCC 1 cut(s) 2196
BspPI GGATC 2 cut(s) 840, 942
BspQI GCTCTTC 1 cut(s) 290
BspTI CTTAAG 2 cut(s) 13, 872
BspTNI GGTCTC 1 cut(s) 1787
BsrDI GCAATG 3 cut(s) 1248, 2017, 2233
BsrI ACTGG 1 cut(s) 636
BssECI CCNNGG 2 cut(s) 1935, 2184
BssT1I CCWWGG 1 cut(s) 1935
Bst2UI CCWGG 1 cut(s) 1691
Bst4CI ACNGT 5 cut(s) 49, 705, 1199, 2148, 2416
Bst6I CTCTTC 6 cut(s) 98, 241, 290, 1116, 1863, 1871
BstAFI CTTAAG 2 cut(s) 13, 872
BstBAI YACGTR 1 cut(s) 1803
BstC8I GCNNGC 3 cut(s) 76, 723, 2399
BstDEI CTNAG 8 cut(s) 70, 430, 1005, 1146, 1329, 1539, 1656, 2382
BstF5I GGATG 5 cut(s) 618, 693, 1263, 1389, 2425
BstFNI CGCG 2 cut(s) 223, 1859
BstHHI GCGC 2 cut(s) 223, 1861
BstMAI GTCTC 7 cut(s) 73, 95, 159, 1022, 1373, 1787, 2031
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 4 cut(s) 280, 560, 877, 1010
BstNI CCWGG 1 cut(s) 1691
BstNSI RCATGY 3 cut(s) 78, 1603, 2401
BstSCI CCNGG 3 cut(s) 1689, 2183, 2184
BstUI CGCG 2 cut(s) 223, 1859
BstV1I GCAGC 4 cut(s) 228, 370, 550, 997
BstV2I GAAGAC 4 cut(s) 473, 1644, 1758, 1910
BstX2I RGATCY 3 cut(s) 29, 934, 2425
BstYI RGATCY 3 cut(s) 29, 934, 2425
Bsu15I ATCGAT 1 cut(s) 1608
BsuI GTATCC 1 cut(s) 1187
BsuTUI ATCGAT 1 cut(s) 1608
BtgZI GCGATG 2 cut(s) 255, 594
BtsCI GGATG 5 cut(s) 618, 693, 1263, 1389, 2425
BtsIMutI CAGTG 3 cut(s) 57, 643, 2421
Cac8I GCNNGC 3 cut(s) 76, 723, 2399
CaiI CAGNNNCTG 1 cut(s) 1748
CfoI GCGC 2 cut(s) 223, 1861
Cfr9I CCCGGG 1 cut(s) 2184
ClaI ATCGAT 1 cut(s) 1608
CseI GACGC 1 cut(s) 1649
CsiI ACCWGGT 1 cut(s) 1689
Csp6I GTAC 4 cut(s) 947, 1932, 2030, 2272
CviAII CATG 8 cut(s) 75, 81, 541, 1600, 1726, 2033, 2041, 2398
CviQI GTAC 4 cut(s) 947, 1932, 2030, 2272
DdeI CTNAG 8 cut(s) 70, 430, 1005, 1146, 1329, 1539, 1656, 2382
DraI TTTAAA 2 cut(s) 808, 886
Eam1104I CTCTTC 6 cut(s) 98, 241, 290, 1116, 1863, 1871
EarI CTCTTC 6 cut(s) 98, 241, 290, 1116, 1863, 1871
EciI GGCGGA 1 cut(s) 280
Ecl136II GAGCTC 2 cut(s) 283, 1951
Eco130I CCWWGG 1 cut(s) 1935
Eco24I GRGCYC 2 cut(s) 285, 1953
Eco31I GGTCTC 1 cut(s) 1787
Eco53kI GAGCTC 2 cut(s) 283, 1951
Eco57I CTGAAG 7 cut(s) 399, 949, 1376, 1770, 1922, 2153, 2220
Eco88I CYCGRG 1 cut(s) 2184
EcoICRI GAGCTC 2 cut(s) 283, 1951
EcoRII CCWGG 1 cut(s) 1689
EcoT14I CCWWGG 1 cut(s) 1935
EcoT38I GRGCYC 2 cut(s) 285, 1953
ErhI CCWWGG 1 cut(s) 1935
Esp3I CGTCTC 2 cut(s) 95, 159
FaeI CATG 8 cut(s) 78, 84, 544, 1603, 1729, 2036, 2044, 2401
FalI AAGNNNNNCTT 2 cut(s) 1743, 1775
FaqI GGGAC 3 cut(s) 1142, 1480, 2139
FatI CATG 8 cut(s) 74, 80, 540, 1599, 1725, 2032, 2040, 2397
FauI CCCGC 1 cut(s) 150
FauNDI CATATG 1 cut(s) 2263
FbaI TGATCA 2 cut(s) 454, 1920
Fnu4HI GCNGC 4 cut(s) 242, 384, 564, 1011
FokI GGATG 5 cut(s) 625, 700, 1270, 1376, 2432
FriOI GRGCYC 2 cut(s) 285, 1953
Fsp4HI GCNGC 4 cut(s) 242, 384, 564, 1011
FspBI CTAG 3 cut(s) 1371, 2327, 2402
GlaI GCGC 2 cut(s) 222, 1860
GluI GCNGC 4 cut(s) 242, 384, 564, 1011
GsaI CCCAGC 2 cut(s) 429, 789
GsuI CTGGAG 1 cut(s) 182
HapII CCGG 6 cut(s) 162, 610, 794, 1648, 1731, 2185
HgaI GACGC 1 cut(s) 1649
HhaI GCGC 2 cut(s) 223, 1861
Hin1II CATG 8 cut(s) 78, 84, 544, 1603, 1729, 2036, 2044, 2401
Hin6I GCGC 2 cut(s) 221, 1859
HinP1I GCGC 2 cut(s) 221, 1859
HincII GTYRAC 2 cut(s) 441, 1342
HindII GTYRAC 2 cut(s) 441, 1342
HindIII AAGCTT 1 cut(s) 2444
HpaI GTTAAC 2 cut(s) 441, 1342
HpaII CCGG 6 cut(s) 162, 610, 794, 1648, 1731, 2185
HphI GGTGA 8 cut(s) 16, 151, 952, 1220, 1569, 1705, 2254, 2417
Hpy166II GTNNAC 5 cut(s) 57, 441, 1342, 1932, 2002
Hpy8I GTNNAC 5 cut(s) 57, 441, 1342, 1932, 2002
Hpy99I CGWCG 3 cut(s) 90, 316, 716
HpyCH4III ACNGT 5 cut(s) 49, 705, 1199, 2148, 2416
HpyCH4IV ACGT 7 cut(s) 495, 752, 761, 820, 857, 1802, 1842
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 560, 877, 1010
HpyF3I CTNAG 8 cut(s) 70, 430, 1005, 1146, 1329, 1539, 1656, 2382
HpySE526I ACGT 7 cut(s) 495, 752, 761, 820, 857, 1802, 1842
Hsp92II CATG 8 cut(s) 78, 84, 544, 1603, 1729, 2036, 2044, 2401
HspAI GCGC 2 cut(s) 221, 1859
Kpn2I TCCGGA 1 cut(s) 793
Ksp22I TGATCA 2 cut(s) 454, 1920
KspAI GTTAAC 2 cut(s) 441, 1342
LguI GCTCTTC 1 cut(s) 290
Lsp1109I GCAGC 4 cut(s) 228, 370, 550, 997
LweI GCATC 6 cut(s) 278, 685, 895, 943, 1653, 2271
MabI ACCWGGT 1 cut(s) 1689
MaeI CTAG 3 cut(s) 1371, 2327, 2402
MaeII ACGT 7 cut(s) 495, 752, 761, 820, 857, 1802, 1842
MaeIII GTNAC 8 cut(s) 4, 38, 157, 484, 735, 992, 1693, 2410
MflI RGATCY 3 cut(s) 29, 934, 2425
MhlI GDGCHC 3 cut(s) 285, 1225, 1953
MlyI GAGTC 3 cut(s) 12, 56, 856
MroI TCCGGA 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 476
MslI CAYNNNNRTG 2 cut(s) 79, 2222
MspCI CTTAAG 2 cut(s) 13, 872
MspI CCGG 6 cut(s) 162, 610, 794, 1648, 1731, 2185
MspR9I CCNGG 3 cut(s) 1691, 2185, 2186
Mva1269I GAATGC 4 cut(s) 1063, 1090, 1330, 2185
MvaI CCWGG 1 cut(s) 1691
MvnI CGCG 2 cut(s) 223, 1859
MwoI GCNNNNNNNGC 4 cut(s) 280, 560, 877, 1010
NciI CCSGG 2 cut(s) 2185, 2186
NdeI CATATG 1 cut(s) 2263
NlaIII CATG 8 cut(s) 78, 84, 544, 1603, 1729, 2036, 2044, 2401
NlaIV GGNNCC 1 cut(s) 2196
NmuCI GTSAC 4 cut(s) 4, 157, 484, 1693
NspI RCATGY 3 cut(s) 78, 1603, 2401
PaeI GCATGC 2 cut(s) 78, 2401
PciSI GCTCTTC 1 cut(s) 290
PcsI WCGNNNNNNNCGW 3 cut(s) 184, 758, 1839
PctI GAATGC 4 cut(s) 1063, 1090, 1330, 2185
PdmI GAANNNNTTC 1 cut(s) 476
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 4 cut(s) 243, 385, 565, 1012
Ple19I CGATCG 1 cut(s) 251
PleI GAGTC 3 cut(s) 12, 56, 855
PpsI GAGTC 3 cut(s) 12, 56, 855
Ppu21I YACGTR 1 cut(s) 1803
PsiI TTATAA 2 cut(s) 1176, 1701
Psp124BI GAGCTC 2 cut(s) 285, 1953
Psp6I CCWGG 1 cut(s) 1689
PspFI CCCAGC 2 cut(s) 425, 785
PspGI CCWGG 1 cut(s) 1689
PspN4I GGNNCC 1 cut(s) 2196
PstNI CAGNNNCTG 1 cut(s) 1748
PsuI RGATCY 3 cut(s) 29, 934, 2425
PsyI GACNNNGTC 1 cut(s) 65
PvuI CGATCG 1 cut(s) 251
RsaI GTAC 4 cut(s) 948, 1933, 2031, 2273
RsaNI GTAC 4 cut(s) 947, 1932, 2030, 2272
RseI CAYNNNNRTG 2 cut(s) 79, 2222
SacI GAGCTC 2 cut(s) 285, 1953
SapI GCTCTTC 1 cut(s) 290
SatI GCNGC 4 cut(s) 242, 384, 564, 1011
SchI GAGTC 3 cut(s) 12, 56, 856
ScrFI CCNGG 3 cut(s) 1691, 2185, 2186
SduI GDGCHC 3 cut(s) 285, 1225, 1953
SexAI ACCWGGT 1 cut(s) 1689
SfaNI GCATC 6 cut(s) 278, 685, 895, 943, 1653, 2271
SmaI CCCGGG 1 cut(s) 2186
SmiMI CAYNNNNRTG 2 cut(s) 79, 2222
SmlI CTYRAG 3 cut(s) 13, 872, 1771
SmoI CTYRAG 3 cut(s) 13, 872, 1771
SphI GCATGC 2 cut(s) 78, 2401
SsiI CCGC 6 cut(s) 143, 291, 386, 830, 1034, 1118
SspMI CTAG 3 cut(s) 1371, 2327, 2402
SstI GAGCTC 2 cut(s) 285, 1953
StyD4I CCNGG 3 cut(s) 1689, 2183, 2184
StyI CCWWGG 1 cut(s) 1935
TaaI ACNGT 5 cut(s) 49, 705, 1199, 2148, 2416
TaiI ACGT 7 cut(s) 498, 755, 764, 823, 860, 1805, 1845
TscAI CASTG 3 cut(s) 64, 643, 2421
TseFI GTSAC 4 cut(s) 4, 157, 484, 1693
TseI GCWGC 4 cut(s) 241, 383, 563, 1010
Tsp45I GTSAC 4 cut(s) 4, 157, 484, 1693
TspGWI ACGGA 3 cut(s) 193, 300, 337
TspMI CCCGGG 1 cut(s) 2184
TspRI CASTG 3 cut(s) 64, 643, 2421
Tth111I GACNNNGTC 1 cut(s) 65
Vha464I CTTAAG 2 cut(s) 13, 872
XapI RAATTY 1 cut(s) 1421
XceI RCATGY 3 cut(s) 78, 1603, 2401
XmaI CCCGGG 1 cut(s) 2184
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 3 cut(s) 1371, 2327, 2402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.