Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010490

Physical Location & Seq

Genomic Coordinates Reverse (-)

32063672 .. 32066754

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024115

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2544 bp

ATGGCAAGGCGAGTCTCTCTTCTTCTTCCCAAGTCTCTACCCACCAAAAACCAAAACCTCCGATCAGTTTCTCTCTGTACAGACTCCGACCCAAGAATCCAACCCTCCAATTCAAGCCACCAAGACCAGCAACGCCATGAACAAGTCCGCAAGCTCAGAATCCTCCTCCAACAGGGCCGAACCGACACCGCAAATCGCTTCATCAAGTCCCTCATTCTCCCCACCTCACCTTTCTCCTCCCCCTCCGACCTTTACAACCTCTTCTCCCTCTCGGCTCCCTCCATGACACCCACATTCTCAGACATGCTCCTCACGGCGTGCACGGAGTCCAAGATGCCTAGCGAAGCCGTTGAGTTGTATGGTCTGATGAGAAAGAGCGACCTCCGTCCGAGTTTGGCTACTCTCAATATGCTGCTAGAGTGCTTGGTGGCTTCGAAAATGTTCAGAAAAACCCTTGAGTTGTTTTCGCAGATTTTCGAGTCTGGTAAGGGCATTCGGCCGGATAAGTTCACTTACGGCAAGGCGTTGCAGGCGGCGGTGAAGCTGGGGGACTTGAATAGGGCTGTTGAGCTTGTGGAGTGCATGAAGGCAGAGAGGTTGAGTCCGAATGTGTTCATTTATAATGTTTTGATTAGTGGGTTGTGTAAAGAGAAGAAAATGAGGGATGCAGAGAAGGTGTTCGATGAAATGCTTGAGAGAAGGGGAGTGCCGACTTTGGTTACTTACAACACGTTGATTGATGGGTATTGTAAGGTGGGTGAGTTGGAGAAGGCGTTTGGGTTGAGAGAGAGGATGAAGGATCAGAAGGTGGAAGCGAATGTGGTGACTTATAATACAATGCTTAATGGGCTTTGTAAGGCAAAGAGAATGGAGGAAGCGAAAAGGGTGTTGGAAGAGATGGAGGCTCATGGATTTGTGCCGGATGGTTTTACTTATAGTATACTTTTCGATGGACATCTGAGGTGTGGTGATGATCAGGGCGTGTTGGCTTTGTTTGAAGAAGCAACCAGGAAAGGTGTGAGGATCAATAGGTATACTTGTAGTATTTTGTTGAACGGGTTGTGCAAGAAAGGAAAGATAGAGAAAGCGGAGGAGATTTTGAAGAAATTAATGGAAACTGGTTTTGTTCCAGATGAAGTAGTGTATAATACTCTGGTGAGTGGATATTGTCGACAATCTGACATTGACAGAGCCATTTTGGTCATTGAGAAAATGGAAGCTCGTGGGTTGAGGCCAAATTGCATCACTTTCAATTCTTTGATTCACAAATTCTGTGAGACAAAGGATATGGATAGGGCGGAGGAATGGGTACAGAAGATGGTAAAGAAGGGGGTTTCGCCGAATTTGGAGACATATAACACCCTTATTAATGGCTATGGGCAGATTTGCGCATTTGATAAGTGTTTCCAGATTCTTGAAGACATGGAAAGTAAGGCAATTAAACCAAATGTTGTGAGCTATGGTTCCCTTATAAATTGTTTATGCAAGGATGGGAGACTTCTTGAAGCTGAAATACAACTCAGAGACATGGTAGGCCGAGGGGTTTTGCCAAATGCACAGATATATAATATGCTCATTGATGGTAGCTCTACAGAGGGGAAGCTGAAAGATGCTTTCAGATTTTTTGATGAGATGGCAAAAAATGGGACAAGTCCAACACTTGCAACCTACAATGCAATCATACATGGACTCTGCAAGAAAGGAAGGATGATTGAAGCTGAAGATTATGTGTCTCAAATTACAAGCAGTGGTTATAGACCCGATGTCATCACATACAACTCCCTAATTTCAGGTTATTCTGATACAGTAAACACCAAGAAATGTCTGGAATTATATGAAACTATGAAGAATCTGAGCATCAAACCTACTTTGAAAACATATCATCCTCTAATTAGTGGATGTAGCAGGGACAATATGGTATTAGCAGAAAAGTTGTTTAATGAGATGTTACAAATGGGCTTGCGTCCTGATCGAATCATATATAATGCACTCATCCACGGTTATGCAGAGCATGGAGATACTCAGAAGGCATTTTCTTTGCACTGTGAGATGGTAAACCAGAAAATCAATGTTGACAAGATGACATATAATAGCTTAATTCTTGGGCACTTCAAACAAGGAAAGGTGTCAGAGGTAAAGGACCTCGTCGATGATATGAAGGCTAAAGGATTGGCACCTAAAGCTGATACGTATAACTTACTTGTGAAGGGACACTGTGAACTAAAGGACTTCAGTGGCGCATATTTTTGGTACAGGGATCTGGTTGAGGATGGTTATCTTCTAAATGTCTCCACATGCAATGAGCTTACAACTGGCCTCCAAAAGGAGGGGAGGTTTCGAGAGGCCCAGGTTATCTGCTTAGAAATGAGTGCTAAAGGAATGGATGATGTTAGCTCTAATGAAGATGCAATTTCTGTTGCCAAGCTTGCCAAATTTATCTCCAAGGAACCCCAAGATGCAAAGTTTTCCTTGGAGTATGCTGTGATAAAGAAGTTTCGGGTGTACATCCATGTTGCGGCTACTCAATTTGGGTTGCTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

848

Amino Acids

95.57

Weight (kDa)

8.38

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	102 - 230	2.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	163 - 212	1.2e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	178 - 327	1.2e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	200 - 230	1.3e-11	PPR repeat
PPR_2	PF13041	202 - 242	6.8e-12	PPR repeat family
PPR	PF01535	206 - 233	3.6e-08	PPR repeat
PPR_3	PF13812	207 - 249	2.7e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	223 - 334	2.8e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	236 - 266	6.3e-12	PPR repeat
PPR_2	PF13041	237 - 286	2e-19	PPR repeat family
PPR	PF01535	240 - 268	6.8e-09	PPR repeat
PPR_3	PF13812	263 - 315	5.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	270 - 301	2.3e-12	PPR repeat
PPR_2	PF13041	273 - 319	4.4e-18	PPR repeat family
PPR	PF01535	275 - 305	2.3e-09	PPR repeat
PPR_2	PF13041	317 - 356	5.8e-06	PPR repeat family
PPR_long	PF17177	323 - 456	2.8e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	331 - 389	5.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	338 - 369	7.7e-06	PPR repeat
TPR_24	PF23276	347 - 456	3.5e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	374 - 406	6.4e-10	PPR repeat
PPR_2	PF13041	377 - 425	4.1e-14	PPR repeat family
PPR	PF01535	380 - 410	7e-06	PPR repeat
PPR_long	PF17177	395 - 499	1.1e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	401 - 460	5.1e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	408 - 441	2.8e-07	PPR repeat
PPR_2	PF13041	415 - 459	3.3e-13	PPR repeat family
PPR_long	PF17177	437 - 533	2e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	451 - 496	2.3e-13	PPR repeat family
PPR_1	PF12854	480 - 510	3.2e-08	PPR repeat
PPR_2	PF13041	482 - 528	1.7e-09	PPR repeat family
PPR_3	PF13812	507 - 562	1.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	513 - 545	3.1e-08	PPR repeat
PPR_long	PF17177	515 - 631	4.6e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	517 - 566	5.3e-15	PPR repeat family
TPR_24	PF23276	522 - 614	1.6e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	549 - 575	6.4e-07	PPR repeat
PPR_2	PF13041	552 - 600	5e-12	PPR repeat family
PPR_3	PF13812	582 - 634	3.9e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	587 - 636	2.6e-11	PPR repeat family
PPR_long	PF17177	631 - 748	5.1e-06	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	639 - 753	1.6e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	652 - 685	6.5e-07	PPR repeat
PPR_2	PF13041	656 - 700	2e-11	PPR repeat family
PPR	PF01535	660 - 686	2.3e-06	PPR repeat
PPR_3	PF13812	682 - 736	2.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	693 - 739	1.3e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12100
fragaria_vesca	FvH4_6g17750 FvH4_6g17750 FvH4_6g17750 FvH4_6g17750
malus_domestica	MD12G1016300.v1.1 MD14G1014400.v1.1
prunus_persica	Prupe.7G119000_v2.0.a1
pyrus_communis	pycom12g01340 pycom14g01210
rosa_chinensis	RchiOBHm_Chr3g0471971
rosa_laevigata	RLG00000024115
rosa_multiflora	Rmu_sc0000090.1_g000022
rosa_roxburghii	Rroxscaffold_6G00409400
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172800 Rh3BG198300 Rh3CG189400 Rh3CG196800 Rh3DG176100
rosa_wichuraiana	Rw3G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	621, 831, 1472
Acc16I	TGCGCA	1 cut(s)	1390
AccB1I	GGYRCC	1 cut(s)	2173
AccI	GTMKAC	3 cut(s)	940, 1034, 1171
AciI	CCGC	7 cut(s)	148, 189, 533, 536, 1088, 1298, 2516
AclWI	GGATC	3 cut(s)	807, 1031, 2265
AcoI	YGGCCR	1 cut(s)	497
AcsI	RAATTY	3 cut(s)	1268, 1342, 2432
AcuI	CTGAAG	2 cut(s)	1740, 2215
AdeI	CACNNNGTG	1 cut(s)	318
AfaI	GTAC	4 cut(s)	79, 1311, 2252, 2504
AfiI	CCNNNNNNNGG	4 cut(s)	172, 2323, 2326, 2515
AflIII	ACRYGT	1 cut(s)	729
AhdI	GACNNNNNGTC	1 cut(s)	1763
AjnI	CCWGG	2 cut(s)	1007, 2346
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	8 cut(s)	19, 39, 1271, 1343, 1489, 1518, 1737, 2293
Alw44I	GTGCAC	1 cut(s)	319
AlwI	GGATC	3 cut(s)	807, 1031, 2265
AoxI	GGCC	6 cut(s)	175, 497, 1232, 1534, 2314, 2343
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	412
ApoI	RAATTY	3 cut(s)	1268, 1342, 2432
AseI	ATTAAT	2 cut(s)	1109, 1368
Asp700I	GAANNNNTTC	3 cut(s)	440, 611, 677
AspLEI	GCGC	2 cut(s)	1391, 2240
AspS9I	GGNCC	3 cut(s)	175, 2140, 2344
AsuHPI	GGTGA	6 cut(s)	219, 550, 770, 835, 980, 1168
AsuII	TTCGAA	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	2140
BaeGI	GKGCMC	2 cut(s)	323, 2109
BanI	GGYRCC	1 cut(s)	2173
BarI	GAAGNNNNNNTAC	2 cut(s)	1497, 1529
BauI	CACGAG	1 cut(s)	1221
BbsI	GAAGAC	1 cut(s)	1425
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	399
BceAI	ACGGC	3 cut(s)	330, 332, 532
BciT130I	CCWGG	2 cut(s)	1009, 2348
BclI	TGATCA	1 cut(s)	973
BcoDI	GTCTC	8 cut(s)	19, 39, 1271, 1343, 1489, 1518, 1737, 2293
BfaI	CTAG	2 cut(s)	339, 416
BfmI	CTRYAG	1 cut(s)	1590
BisI	GCNGC	3 cut(s)	413, 534, 2517
BlsI	GCNGC	3 cut(s)	414, 535, 2518
Bme1390I	CCNGG	2 cut(s)	1009, 2348
Bme18I	GGWCC	1 cut(s)	2140
BmeRI	GACNNNNNGTC	1 cut(s)	1763
BmgT120I	GGNCC	3 cut(s)	175, 2140, 2344
BmiI	GGNNCC	4 cut(s)	276, 1465, 2175, 2448
BmrFI	CCNGG	2 cut(s)	1009, 2348
BmsI	GCATC	7 cut(s)	324, 655, 1251, 1600, 1866, 2395, 2446
BoxI	GACNNNNGTC	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	1425
Bpu14I	TTCGAA	1 cut(s)	434
BpuEI	CTTGAG	2 cut(s)	476, 713
BsaAI	YACGTR	1 cut(s)	2190
BsaBI	GATNNNNATC	2 cut(s)	954, 2274
BsaJI	CCNNGG	5 cut(s)	1537, 1996, 2346, 2442, 2469
BsaXI	ACNNNNNCTCC	6 cut(s)	248, 278, 758, 788, 2318, 2348
Bsc4I	CCNNNNNNNGG	4 cut(s)	172, 2323, 2326, 2515
Bse1I	ACTGG	2 cut(s)	1123, 2317
Bse3DI	GCAATG	1 cut(s)	2305
Bse8I	GATNNNNATC	2 cut(s)	954, 2274
BseBI	CCWGG	2 cut(s)	1009, 2348
BseDI	CCNNGG	5 cut(s)	1537, 1996, 2346, 2442, 2469
BseJI	GATNNNNATC	2 cut(s)	954, 2274
BseLI	CCNNNNNNNGG	4 cut(s)	172, 2323, 2326, 2515
BseMI	GCAATG	1 cut(s)	2305
BseMII	CTCAG	6 cut(s)	169, 312, 950, 1534, 1844, 2036
BseNI	ACTGG	2 cut(s)	1123, 2317
BseRI	GAGGAG	4 cut(s)	155, 226, 299, 1106
BseSI	GKGCMC	2 cut(s)	323, 2109
BseX3I	CGGCCG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	500
BshFI	GGCC	6 cut(s)	177, 499, 1234, 1536, 2316, 2345
BshNI	GGYRCC	1 cut(s)	2173
BsiEI	CGRYCG	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	500, 920
BslFI	GGGAC	5 cut(s)	193, 563, 1660, 1922, 2223
BslI	CCNNNNNNNGG	4 cut(s)	172, 2323, 2326, 2515
BsmAI	GTCTC	8 cut(s)	19, 39, 1271, 1343, 1489, 1518, 1737, 2293
BsmFI	GGGAC	5 cut(s)	193, 563, 1660, 1922, 2223
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	6 cut(s)	177, 499, 1234, 1536, 2316, 2345
Bsp119I	TTCGAA	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	323, 2109
Bsp1407I	TGTACA	2 cut(s)	77, 2502
Bsp143I	GATC	6 cut(s)	62, 799, 973, 1023, 1969, 2257
BspACI	CCGC	7 cut(s)	148, 189, 533, 536, 1088, 1298, 2516
BspANI	GGCC	6 cut(s)	177, 499, 1234, 1536, 2316, 2345
BspCNI	CTCAG	6 cut(s)	168, 311, 951, 1533, 1845, 2035
BspLI	GGNNCC	4 cut(s)	276, 1465, 2175, 2448
BspPI	GGATC	3 cut(s)	807, 1031, 2265
BspT104I	TTCGAA	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	2173
BsrDI	GCAATG	1 cut(s)	2305
BsrGI	TGTACA	2 cut(s)	77, 2502
BsrI	ACTGG	2 cut(s)	1123, 2317
BssECI	CCNNGG	5 cut(s)	1537, 1996, 2346, 2442, 2469
BssMI	GATC	6 cut(s)	62, 799, 973, 1023, 1969, 2257
BssNAI	GTATAC	2 cut(s)	941, 1035
BssSI	CACGAG	1 cut(s)	1221
BssT1I	CCWWGG	2 cut(s)	2442, 2469
Bst1107I	GTATAC	2 cut(s)	941, 1035
Bst2BI	CACGAG	1 cut(s)	1221
Bst2UI	CCWGG	2 cut(s)	1009, 2348
Bst4CI	ACNGT	4 cut(s)	1807, 2000, 2045, 2216
Bst6I	CTCTTC	3 cut(s)	24, 266, 888
BstAUI	TGTACA	2 cut(s)	77, 2502
BstBAI	YACGTR	1 cut(s)	2190
BstBI	TTCGAA	1 cut(s)	434
BstC8I	GCNNGC	5 cut(s)	152, 319, 531, 1961, 2427
BstDEI	CTNAG	7 cut(s)	155, 298, 959, 1520, 1853, 2022, 2359
BstDSI	CCRYGG	1 cut(s)	1996
BstENI	CCTNNNNNAGG	2 cut(s)	170, 2321
BstHHI	GCGC	2 cut(s)	1391, 2240
BstKTI	GATC	6 cut(s)	65, 802, 976, 1026, 1972, 2260
BstMAI	GTCTC	8 cut(s)	19, 39, 1271, 1343, 1489, 1518, 1737, 2293
BstMBI	GATC	6 cut(s)	62, 799, 973, 1023, 1969, 2257
BstMCI	CGRYCG	1 cut(s)	500
BstMWI	GCNNNNNNNGC	4 cut(s)	530, 847, 2180, 2426
BstNI	CCWGG	2 cut(s)	1009, 2348
BstNSI	RCATGY	2 cut(s)	307, 2298
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	1007, 2346
BstSFI	CTRYAG	1 cut(s)	1590
BstSLI	GKGCMC	2 cut(s)	323, 2109
BstSNI	TACGTA	1 cut(s)	2190
BstV1I	GCAGC	1 cut(s)	399
BstV2I	GAAGAC	1 cut(s)	1425
BstX2I	RGATCY	1 cut(s)	2257
BstYI	RGATCY	1 cut(s)	2257
BstZ17I	GTATAC	2 cut(s)	941, 1035
BstZI	CGGCCG	1 cut(s)	497
BsuRI	GGCC	6 cut(s)	177, 499, 1234, 1536, 2316, 2345
BtgI	CCRYGG	1 cut(s)	1996
BtsI	GCAGTG	1 cut(s)	1753
BtsIMutI	CAGTG	4 cut(s)	1753, 2041, 2212, 2239
Cac8I	GCNNGC	5 cut(s)	152, 319, 531, 1961, 2427
CfoI	GCGC	2 cut(s)	1391, 2240
Cfr13I	GGNCC	3 cut(s)	175, 2140, 2344
CseI	GACGC	1 cut(s)	1952
Csp6I	GTAC	4 cut(s)	78, 1310, 2251, 2503
CviQI	GTAC	4 cut(s)	78, 1310, 2251, 2503
DdeI	CTNAG	7 cut(s)	155, 298, 959, 1520, 1853, 2022, 2359
DpnI	GATC	6 cut(s)	64, 801, 975, 1025, 1971, 2259
DpnII	GATC	6 cut(s)	62, 799, 973, 1023, 1969, 2257
DraIII	CACNNNGTG	1 cut(s)	318
DriI	GACNNNNNGTC	1 cut(s)	1763
EaeI	YGGCCR	1 cut(s)	497
EagI	CGGCCG	1 cut(s)	497
Eam1104I	CTCTTC	3 cut(s)	24, 266, 888
Eam1105I	GACNNNNNGTC	1 cut(s)	1763
EarI	CTCTTC	3 cut(s)	24, 266, 888
EciI	GGCGGA	1 cut(s)	1313
EclXI	CGGCCG	1 cut(s)	497
Eco105I	TACGTA	1 cut(s)	2190
Eco130I	CCWWGG	2 cut(s)	2442, 2469
Eco47I	GGWCC	1 cut(s)	2140
Eco52I	CGGCCG	1 cut(s)	497
Eco57I	CTGAAG	2 cut(s)	1740, 2215
EcoNI	CCTNNNNNAGG	2 cut(s)	170, 2321
EcoO109I	RGGNCCY	1 cut(s)	2140
EcoRII	CCWGG	2 cut(s)	1007, 2346
EcoT14I	CCWWGG	2 cut(s)	2442, 2469
ErhI	CCWWGG	2 cut(s)	2442, 2469
FalI	AAGNNNNNCTT	2 cut(s)	2453, 2485
FaqI	GGGAC	5 cut(s)	193, 563, 1660, 1922, 2223
FbaI	TGATCA	1 cut(s)	973
FblI	GTMKAC	3 cut(s)	940, 1034, 1171
Fnu4HI	GCNGC	3 cut(s)	413, 534, 2517
Fsp4HI	GCNGC	3 cut(s)	413, 534, 2517
FspBI	CTAG	2 cut(s)	339, 416
FspI	TGCGCA	1 cut(s)	1390
GlaI	GCGC	2 cut(s)	1390, 2239
GluI	GCNGC	3 cut(s)	413, 534, 2517
GsaI	CCCAGC	1 cut(s)	548
HaeIII	GGCC	6 cut(s)	177, 499, 1234, 1536, 2316, 2345
HapII	CCGG	2 cut(s)	500, 920
HgaI	GACGC	1 cut(s)	1952
HhaI	GCGC	2 cut(s)	1391, 2240
Hin6I	GCGC	2 cut(s)	1389, 2238
HinP1I	GCGC	2 cut(s)	1389, 2238
HincII	GTYRAC	2 cut(s)	1172, 2074
HindII	GTYRAC	2 cut(s)	1172, 2074
HindIII	AAGCTT	1 cut(s)	2423
HpaII	CCGG	2 cut(s)	500, 920
HphI	GGTGA	6 cut(s)	219, 550, 770, 835, 980, 1168
Hpy188III	TCNNGA	7 cut(s)	1130, 1408, 1415, 1502, 1826, 1967, 2339
Hpy99I	CGWCG	1 cut(s)	2150
HpyCH4III	ACNGT	4 cut(s)	1807, 2000, 2045, 2216
HpyCH4IV	ACGT	2 cut(s)	731, 2189
HpyF10VI	GCNNNNNNNGC	4 cut(s)	530, 847, 2180, 2426
HpyF3I	CTNAG	7 cut(s)	155, 298, 959, 1520, 1853, 2022, 2359
HpySE526I	ACGT	2 cut(s)	731, 2189
HspAI	GCGC	2 cut(s)	1389, 2238
Ksp22I	TGATCA	1 cut(s)	973
Kzo9I	GATC	6 cut(s)	62, 799, 973, 1023, 1969, 2257
LmnI	GCTCC	2 cut(s)	280, 312
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	7 cut(s)	324, 655, 1251, 1600, 1866, 2395, 2446
MaeI	CTAG	2 cut(s)	339, 416
MaeII	ACGT	2 cut(s)	731, 2189
MaeIII	GTNAC	3 cut(s)	718, 823, 1947
MalI	GATC	6 cut(s)	64, 801, 975, 1025, 1971, 2259
MboI	GATC	6 cut(s)	62, 799, 973, 1023, 1969, 2257
MflI	RGATCY	1 cut(s)	2257
MhlI	GDGCHC	2 cut(s)	323, 2109
MlyI	GAGTC	6 cut(s)	21, 77, 335, 488, 610, 1683
MmeI	TCCRAC	7 cut(s)	111, 124, 193, 270, 744, 870, 1679
MroXI	GAANNNNTTC	3 cut(s)	440, 611, 677
MseI	TTAA	6 cut(s)	843, 1109, 1368, 1440, 1938, 2096
MslI	CAYNNNNRTG	1 cut(s)	2001
MspI	CCGG	2 cut(s)	500, 920
MspR9I	CCNGG	2 cut(s)	1009, 2348
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	1009, 2348
MwoI	GCNNNNNNNGC	4 cut(s)	530, 847, 2180, 2426
NdeII	GATC	6 cut(s)	62, 799, 973, 1023, 1969, 2257
NlaIV	GGNNCC	4 cut(s)	276, 1465, 2175, 2448
NmeAIII	GCCGAG	2 cut(s)	251, 1562
NmuCI	GTSAC	1 cut(s)	823
NsbI	TGCGCA	1 cut(s)	1390
NspI	RCATGY	2 cut(s)	307, 2298
NspV	TTCGAA	1 cut(s)	434
PctI	GAATGC	1 cut(s)	492
PdmI	GAANNNNTTC	3 cut(s)	440, 611, 677
PfeI	GAWTC	6 cut(s)	96, 159, 1261, 1411, 1849, 1974
PflFI	GACNNNGTC	1 cut(s)	2144
PkrI	GCNGC	3 cut(s)	414, 535, 2518
PleI	GAGTC	6 cut(s)	20, 77, 334, 487, 609, 1683
PpsI	GAGTC	6 cut(s)	20, 77, 334, 487, 609, 1683
Ppu21I	YACGTR	1 cut(s)	2190
PpuMI	RGGWCCY	1 cut(s)	2140
PshAI	GACNNNNGTC	1 cut(s)	384
PshBI	ATTAAT	2 cut(s)	1109, 1368
PsiI	TTATAA	3 cut(s)	621, 831, 1472
Psp5II	RGGWCCY	1 cut(s)	2140
Psp6I	CCWGG	2 cut(s)	1007, 2346
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	2 cut(s)	1007, 2346
PspN4I	GGNNCC	4 cut(s)	276, 1465, 2175, 2448
PspPI	GGNCC	3 cut(s)	175, 2140, 2344
PspPPI	RGGWCCY	1 cut(s)	2140
PsuI	RGATCY	1 cut(s)	2257
PsyI	GACNNNGTC	1 cut(s)	2144
RsaI	GTAC	4 cut(s)	79, 1311, 2252, 2504
RsaNI	GTAC	4 cut(s)	78, 1310, 2251, 2503
RseI	CAYNNNNRTG	1 cut(s)	2001
SalI	GTCGAC	1 cut(s)	1170
SaqAI	TTAA	6 cut(s)	843, 1109, 1368, 1440, 1938, 2096
SatI	GCNGC	3 cut(s)	413, 534, 2517
Sau3AI	GATC	6 cut(s)	62, 799, 973, 1023, 1969, 2257
Sau96I	GGNCC	3 cut(s)	175, 2140, 2344
SchI	GAGTC	6 cut(s)	21, 77, 335, 488, 610, 1683
ScrFI	CCNGG	2 cut(s)	1009, 2348
SduI	GDGCHC	2 cut(s)	323, 2109
SfaNI	GCATC	7 cut(s)	324, 655, 1251, 1600, 1866, 2395, 2446
SfcI	CTRYAG	1 cut(s)	1590
SfuI	TTCGAA	1 cut(s)	434
SinI	GGWCC	1 cut(s)	2140
SmiMI	CAYNNNNRTG	1 cut(s)	2001
SmlI	CTYRAG	2 cut(s)	455, 692
SmoI	CTYRAG	2 cut(s)	455, 692
SnaBI	TACGTA	1 cut(s)	2190
SsiI	CCGC	7 cut(s)	148, 189, 533, 536, 1088, 1298, 2516
SspMI	CTAG	2 cut(s)	339, 416
StyD4I	CCNGG	2 cut(s)	1007, 2346
StyI	CCWWGG	2 cut(s)	2442, 2469
TaaI	ACNGT	4 cut(s)	1807, 2000, 2045, 2216
TaiI	ACGT	2 cut(s)	734, 2192
TaqI	TCGA	8 cut(s)	434, 477, 681, 948, 1171, 1972, 2148, 2338
TatI	WGTACW	2 cut(s)	77, 2502
TauI	GCSGC	2 cut(s)	536, 2519
TfiI	GAWTC	6 cut(s)	96, 159, 1261, 1411, 1849, 1974
Tru1I	TTAA	6 cut(s)	843, 1109, 1368, 1440, 1938, 2096
Tru9I	TTAA	6 cut(s)	843, 1109, 1368, 1440, 1938, 2096
TscAI	CASTG	4 cut(s)	1753, 2048, 2219, 2239
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	823
TspGWI	ACGGA	2 cut(s)	338, 374
TspRI	CASTG	4 cut(s)	1753, 2048, 2219, 2239
Tth111I	GACNNNGTC	1 cut(s)	2144
VneI	GTGCAC	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	2140
VspI	ATTAAT	2 cut(s)	1109, 1368
XagI	CCTNNNNNAGG	2 cut(s)	170, 2321
XapI	RAATTY	3 cut(s)	1268, 1342, 2432
XceI	RCATGY	2 cut(s)	307, 2298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1822
XmiI	GTMKAC	3 cut(s)	940, 1034, 1171
XmnI	GAANNNNTTC	3 cut(s)	440, 611, 677
XspI	CTAG	2 cut(s)	339, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.