Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010490

Physical Location & Seq

Genomic Coordinates Forward (+)

17615301 .. 17618402

Gene Structure 3102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG198300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCAAGGCGCGTCTCTCTTCTTCTTCTTCCTAAGTCTCTACCCACCAAAACCCAAAACCTCCGATCAGTTTCTCTCTGTACAGACTCCGACCCAAGAATCCAACCCTCCAATTCAAACCACCAAGACCAGCAACGCCATGAACAAGTCCGCAAGCTCCGAATCCTCCTCCAGCAGGGCCGAACCGACACCGCAAATCGCTTCATCAAGTCCCTCATTCTCCCCACCTCGCCTTTCTCCTCCCCCTCCGACCTTTACAACCTCTTCTCCCTCTCCGCTCCCTCCATGACACCCACATTCTCCGACATGCTCCTCACGGCGTGCACGGAGTCCAAGATGCCCAGCGAAGCAGTTGAGTTGTATGGTCTGATGAGAAAGAGCGACCTCCGTCCGAGTTTGGCCACTCTCAATATGCTGCTAGAGTGCTTGGTGGCTTCGAAAATGTTCAGAAAAACCCTTGAGTTGTTTTCGCAGATTTTCGAGTCTGGTAAGGGCATTCGGCCGGATAAGTTCACTTACGGCAAGGCGGTGCAGGCGGCGGTGAAGCTGGGGGACTTGACTAGGGCTGTTGAGCTTGTGGAGTGCATGAAGAGAGAGAGGGAACTGGTTGAGAATGGTTATCTTCTAAACGTCTCCACATGCAATGAGCTTACAACTGGCCTCCAAAAGGAGGGGAGGTTTCAAGAGGCCCAGGTTATCTGCTTAGAAATGAGTGCTAAAGGAATGGATGATGTTAGCTCTAATGAAGATGCAATTTCTGTTGCCAAGTTGAAAAGCTTCGAGCTTGCCAAATTTATCTCCAAGGAATCCCAAGATGCAAAGTTTTCCTTGGAGTATGCTGTGATAAAGAAGTTTCGGGTGTACATCCATGTTGCGGCTACTCAATTTGGGTTGCTTGGATACATGGTCGAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

305

Amino Acids

34.33

Weight (kDa)

8.93

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12100
fragaria_vesca	FvH4_6g17750 FvH4_6g17750 FvH4_6g17750 FvH4_6g17750
malus_domestica	MD12G1016300.v1.1 MD14G1014400.v1.1
prunus_persica	Prupe.7G119000_v2.0.a1
pyrus_communis	pycom12g01340 pycom14g01210
rosa_chinensis	RchiOBHm_Chr3g0471971
rosa_laevigata	RLG00000024115
rosa_multiflora	Rmu_sc0000090.1_g000022
rosa_roxburghii	Rroxscaffold_6G00409400
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172800 Rh3BG198300 Rh3CG189400 Rh3CG196800 Rh3DG176100
rosa_wichuraiana	Rw3G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	278
AccII	CGCG	1 cut(s)	12
AciI	CCGC	7 cut(s)	151, 192, 276, 527, 536, 539, 875
AcoI	YGGCCR	2 cut(s)	399, 500
AcsI	RAATTY	1 cut(s)	791
AdeI	CACNNNGTG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	82, 863
AfiI	CCNNNNNNNGG	4 cut(s)	175, 667, 670, 874
AgsI	TTSAA	3 cut(s)	117, 683, 772
AjnI	CCWGG	1 cut(s)	690
AluBI	AGCT	7 cut(s)	157, 547, 574, 649, 738, 777, 784
AluI	AGCT	7 cut(s)	157, 547, 574, 649, 738, 777, 784
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	3 cut(s)	19, 42, 637
Alw44I	GTGCAC	1 cut(s)	322
AoxI	GGCC	5 cut(s)	178, 399, 500, 658, 687
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	1 cut(s)	791
Asp700I	GAANNNNTTC	2 cut(s)	443, 776
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	178, 688
AsuHPI	GGTGA	1 cut(s)	553
AsuII	TTCGAA	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	402
BceAI	ACGGC	2 cut(s)	333, 535
BciT130I	CCWGG	1 cut(s)	692
BciVI	GTATCC	1 cut(s)	893
BcoDI	GTCTC	3 cut(s)	19, 42, 637
BfaI	CTAG	2 cut(s)	419, 561
BfuI	GTATCC	1 cut(s)	893
BisI	GCNGC	3 cut(s)	416, 537, 876
BlsI	GCNGC	3 cut(s)	417, 538, 877
Bme1390I	CCNGG	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	178, 688
BmrFI	CCNGG	1 cut(s)	692
BmsI	GCATC	3 cut(s)	327, 739, 805
BoxI	GACNNNNGTC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	690, 801, 828
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 662, 692
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 667, 670, 874
Bse1I	ACTGG	2 cut(s)	609, 661
Bse3DI	GCAATG	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	692
BseDI	CCNNGG	3 cut(s)	690, 801, 828
BseGI	GGATG	2 cut(s)	733, 864
BseLI	CCNNNNNNNGG	4 cut(s)	175, 667, 670, 874
BseMI	GCAATG	1 cut(s)	649
BseNI	ACTGG	2 cut(s)	609, 661
BseRI	GAGGAG	3 cut(s)	158, 229, 302
BseSI	GKGCMC	1 cut(s)	326
BseX3I	CGGCCG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	402
BseYI	CCCAGC	2 cut(s)	341, 547
BsgI	GTGCAG	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	503
BshFI	GGCC	5 cut(s)	180, 401, 502, 660, 689
BsiEI	CGRYCG	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	2 cut(s)	196, 566
BslI	CCNNNNNNNGG	4 cut(s)	175, 667, 670, 874
BsmAI	GTCTC	3 cut(s)	19, 42, 637
BsmBI	CGTCTC	2 cut(s)	19, 637
BsmFI	GGGAC	2 cut(s)	196, 566
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	5 cut(s)	180, 401, 502, 660, 689
Bsp119I	TTCGAA	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp1407I	TGTACA	2 cut(s)	80, 861
Bsp143I	GATC	1 cut(s)	65
BspACI	CCGC	7 cut(s)	151, 192, 276, 527, 536, 539, 875
BspANI	GGCC	5 cut(s)	180, 401, 502, 660, 689
BspFNI	CGCG	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	649
BsrGI	TGTACA	2 cut(s)	80, 861
BsrI	ACTGG	2 cut(s)	609, 661
BssECI	CCNNGG	3 cut(s)	690, 801, 828
BssMI	GATC	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	801, 828
Bst2UI	CCWGG	1 cut(s)	692
Bst6I	CTCTTC	3 cut(s)	24, 269, 584
BstAUI	TGTACA	2 cut(s)	80, 861
BstBI	TTCGAA	1 cut(s)	437
BstC8I	GCNNGC	4 cut(s)	155, 322, 534, 786
BstDEI	CTNAG	2 cut(s)	33, 703
BstENI	CCTNNNNNAGG	2 cut(s)	173, 665
BstF5I	GGATG	2 cut(s)	733, 864
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	3 cut(s)	19, 42, 637
BstMBI	GATC	1 cut(s)	65
BstMCI	CGRYCG	1 cut(s)	503
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNI	CCWGG	1 cut(s)	692
BstNSI	RCATGY	2 cut(s)	310, 642
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	402
BstZI	CGGCCG	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	893
BsuRI	GGCC	5 cut(s)	180, 401, 502, 660, 689
BtsCI	GGATG	2 cut(s)	733, 864
Cac8I	GCNNGC	4 cut(s)	155, 322, 534, 786
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	178, 688
Csp6I	GTAC	2 cut(s)	81, 862
CviAII	CATG	7 cut(s)	140, 286, 307, 586, 639, 869, 904
CviQI	GTAC	2 cut(s)	81, 862
DdeI	CTNAG	2 cut(s)	33, 703
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
DraIII	CACNNNGTG	1 cut(s)	321
EaeI	YGGCCR	2 cut(s)	399, 500
EagI	CGGCCG	1 cut(s)	500
Eam1104I	CTCTTC	3 cut(s)	24, 269, 584
EarI	CTCTTC	3 cut(s)	24, 269, 584
EclXI	CGGCCG	1 cut(s)	500
Eco130I	CCWWGG	2 cut(s)	801, 828
Eco52I	CGGCCG	1 cut(s)	500
EcoNI	CCTNNNNNAGG	2 cut(s)	173, 665
EcoRII	CCWGG	1 cut(s)	690
EcoT14I	CCWWGG	2 cut(s)	801, 828
ErhI	CCWWGG	2 cut(s)	801, 828
Esp3I	CGTCTC	2 cut(s)	19, 637
FaeI	CATG	7 cut(s)	143, 289, 310, 589, 642, 872, 907
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FaqI	GGGAC	2 cut(s)	196, 566
FatI	CATG	7 cut(s)	139, 285, 306, 585, 638, 868, 903
Fnu4HI	GCNGC	3 cut(s)	416, 537, 876
FokI	GGATG	2 cut(s)	740, 851
Fsp4HI	GCNGC	3 cut(s)	416, 537, 876
FspBI	CTAG	2 cut(s)	419, 561
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	3 cut(s)	416, 537, 876
GsaI	CCCAGC	2 cut(s)	345, 551
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	5 cut(s)	180, 401, 502, 660, 689
HapII	CCGG	1 cut(s)	503
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	7 cut(s)	143, 289, 310, 589, 642, 872, 907
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	775
HinfI	GANTC	6 cut(s)	86, 99, 162, 329, 482, 806
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	3 cut(s)	324, 513, 862
Hpy188I	TCNGA	8 cut(s)	65, 91, 161, 250, 304, 369, 393, 449
Hpy188III	TCNNGA	1 cut(s)	683
Hpy8I	GTNNAC	3 cut(s)	324, 513, 862
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	6 cut(s)	324, 532, 585, 642, 752, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	2 cut(s)	33, 703
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	7 cut(s)	143, 289, 310, 589, 642, 872, 907
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	3 cut(s)	162, 283, 315
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	3 cut(s)	327, 739, 805
MaeI	CTAG	2 cut(s)	419, 561
MaeII	ACGT	1 cut(s)	630
MalI	GATC	1 cut(s)	67
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	1 cut(s)	65
MboII	GAAGA	8 cut(s)	11, 14, 17, 20, 256, 601, 614, 758
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	4 cut(s)	112, 753, 791, 884
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	3 cut(s)	80, 338, 491
MmeI	TCCRAC	4 cut(s)	114, 127, 273, 327
Mox20I	TGGCCA	1 cut(s)	401
MroXI	GAANNNNTTC	2 cut(s)	443, 776
MscI	TGGCCA	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	401
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	1 cut(s)	692
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	692
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	533
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	7 cut(s)	143, 289, 310, 589, 642, 872, 907
NspI	RCATGY	2 cut(s)	310, 642
NspV	TTCGAA	1 cut(s)	437
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	2 cut(s)	443, 776
PfeI	GAWTC	3 cut(s)	99, 162, 806
PkrI	GCNGC	3 cut(s)	417, 538, 877
PleI	GAGTC	3 cut(s)	80, 337, 490
PpsI	GAGTC	3 cut(s)	80, 337, 490
PshAI	GACNNNNGTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	690
PspFI	CCCAGC	2 cut(s)	341, 547
PspGI	CCWGG	1 cut(s)	690
PspPI	GGNCC	2 cut(s)	178, 688
RsaI	GTAC	2 cut(s)	82, 863
RsaNI	GTAC	2 cut(s)	81, 862
SatI	GCNGC	3 cut(s)	416, 537, 876
Sau3AI	GATC	1 cut(s)	65
Sau96I	GGNCC	2 cut(s)	178, 688
SchI	GAGTC	3 cut(s)	80, 338, 491
ScrFI	CCNGG	1 cut(s)	692
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	3 cut(s)	327, 739, 805
SfuI	TTCGAA	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	4 cut(s)	112, 753, 791, 884
SsiI	CCGC	7 cut(s)	151, 192, 276, 527, 536, 539, 875
SspMI	CTAG	2 cut(s)	419, 561
StyD4I	CCNGG	1 cut(s)	690
StyI	CCWWGG	2 cut(s)	801, 828
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	4 cut(s)	437, 480, 780, 909
TasI	AATT	4 cut(s)	112, 753, 791, 884
TatI	WGTACW	2 cut(s)	80, 861
TauI	GCSGC	2 cut(s)	539, 878
TfiI	GAWTC	3 cut(s)	99, 162, 806
TseI	GCWGC	1 cut(s)	415
TspDTI	ATGAA	4 cut(s)	156, 193, 602, 759
TspGWI	ACGGA	2 cut(s)	341, 377
VneI	GTGCAC	1 cut(s)	322
XagI	CCTNNNNNAGG	2 cut(s)	173, 665
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	2 cut(s)	310, 642
XmnI	GAANNNNTTC	2 cut(s)	443, 776
XspI	CTAG	2 cut(s)	419, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.