Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010490

Physical Location & Seq

Genomic Coordinates Reverse (-)

17957501 .. 17960737

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G016780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGACACCCACATTCTCCGACATGCTCCTCACGGCGTGCACGGAGTCCAAGATGCCCAGCGAAGCGGTTGAGTTGTATGGTCTGATGAGAAAGAGCGACCTCCGTCCGAGTTTGGCCACTCTCAATATGCTGCTAGAGTGCTTGGTGGCTTCGAAAATGTTCAGAAAAACCCTTGAGTTGTTTTCGCAGATTTTCGAGTCTGGTAAGGGCATTCGGCCGGATAAGTTCACTTACGGCAAGGCGGTGCAGGCGGCGGTGAAGCTGGGGGACTTGACTAGGGCTGTTGAGCTTGTGGAGTGCATGAAGAGAGAGAGGTTGAGCCCGAATGTGTTCATTTATAATGTTTTGATTAGTGGGTTGTGTAAAGAGAAGAAAATGAGCGATGCAGAGAAGGTGTTCGATGAAATGCGTGAGAGAAGGGGCGTGCCGACTTTGGTTACTTACAACACGTTGATCGATGGGTATTGTAAGGTGGGTGAGTTGGAGAAGGCGTTTGGGTTGAGAGAGTGGATGAAGGATCAGAAGGTGGAAGCGAATGTGGTGACTTATAATACAATGCTTAATGGGCTTTGTAAGGCAAAGAGAATGGAGGAAGCGAAAAGGGTGTTGGAAGAGATGGAGGCTCATGGATTTGTGCCGGATGGTTTTACTTATAGTATACTTTTCGATGGACATCTGAGGTGTGGTGATGATCAGGGCGTGTTGGCTTTGTTTGAAGAAGCAACCAGGAAAGGTGTGAGGATCAATGGGTATACTTGTAGTATTTTGTTGAATGGGTTGTGCAAGAAAGGAAAGATAGAGAAAGCGGAGGAGATTTTGAAGAAATTAATGGAAACTGGTTTTGTTCCGGATGAAGTAGTGTATAATACTCTGGTGAGTGGATATTGTCGACAATCTGACATTGACAGAGCCATTTTGGTCATTGAGAAAATGGAAGCTCGTGGGTTGAGGCCAAATTGCATCACTTTCAATTCTTTGATTCACAAATTCTGTGAGACAAAGGATATGGATAGGGCGGAGGAATGGGTACAGAAGATGGTAAAGAAGGGAGTTTCGCCGAATTTGGAGACGTATAACACCCTTATTAATGGCTATGGGCAGATTTGCTCATTTGATAAGTGTTTCCAGATTCTTGAAGACATGGAAAGTAAGGCAATTAAACCAAATGTTGTGAGCTATGGTTCCCTTATAAATTGTTTATGCAAGGATGGGAGACTTCTTGAAGCTGAAATACAACTCAGAGACATGGTAGGCCGAGGGGTTTTGCCAAATGCACAGATATATAATATGCTCATTGATGGTAGCTCTACAGAGGGGAAGCTGAAAGATTCTTTCAGATTTTTTGATGAGATGGCAAAAAATGGGATAAGTCCAACACTTGCAACCTACAATGCAATCATACATGGACTCTGCAAGAAAGGAAGGATGATTGAAGCTGAAGATTATGAGTCTCAAATTACAAGCAGTGGTTATAGACCCGATGTCATCACATACAACTCCCTAATTTCAGGTTATTCTGATACAATAAACACCCAGAAATGTCTGGAATTATATGAAACTATGAAGAATCTGGGCATCAAACCTACTTTGAATACATATCATCCTCTAATTAGTGGATGTAGCAGGGACAATATGGTATTAGCAGAAAAGTTGTTTAATGAGATGTTACAAATGGGCTTGCGTCCTGATCGAATCATATATAATGCACTGATCCACGGTTATGCAGAGCATGGAGATACTCAGAAGGCACTTTCTTTGCACTGTGAGATGGTAAACCAGAAAATCAATGTTGACAAGATGACGTATAATAGCTTAATTCTTGGGCACTTCAAACAAGGGAAGGTGTCAGAGGTAAAGGACCTCGTCGATGATATGAAGGCTAAAGGATTGGCACCTAAAGCTGATACGTATAACTTACTTGTGAAGGGACACTGTGAACTAAAGGACTTCAGTGGCGCATATTTTTGGTACAGGGAACTGGTTGAGAATGGTTATCTTCTAAACGTCTCCACATGCAATGAGCTTACAACTGGCCTCCAAAAGGAGGGGAGGTTTCAAGAGGCCCAGGTTATCTGCTTAGAAATGAGTGCTAAAGGAATGGATGATGTTAGCTCTAATGAAGATGCAATTTCTGTTGCCAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

715

Amino Acids

80.6

Weight (kDa)

6.08

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	8 - 137	1.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	69 - 118	3.8e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	82 - 232	6e-12	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	106 - 137	5.8e-12	PPR repeat
PPR_2	PF13041	108 - 148	4.7e-12	PPR repeat family
PPR	PF01535	112 - 139	2e-08	PPR repeat
PPR_3	PF13812	116 - 155	7.5e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	129 - 240	8.2e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	142 - 171	8.4e-11	PPR repeat
PPR_2	PF13041	143 - 192	4.5e-20	PPR repeat family
PPR	PF01535	146 - 169	1.2e-06	PPR repeat
PPR_3	PF13812	171 - 221	8.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	176 - 207	1.9e-12	PPR repeat
PPR_2	PF13041	179 - 225	3.5e-18	PPR repeat family
PPR	PF01535	181 - 211	1.9e-09	PPR repeat
PPR_2	PF13041	223 - 262	9.5e-06	PPR repeat family
PPR_long	PF17177	228 - 362	4.3e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	237 - 295	8.3e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	253 - 362	2.7e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	280 - 312	5.3e-10	PPR repeat
PPR_2	PF13041	283 - 331	3.3e-14	PPR repeat family
PPR	PF01535	286 - 316	5.7e-06	PPR repeat
PPR_long	PF17177	302 - 405	8.1e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	307 - 366	4.1e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	314 - 347	2.3e-07	PPR repeat
PPR_2	PF13041	318 - 365	5.6e-14	PPR repeat family
PPR_long	PF17177	343 - 439	1.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	353 - 402	3.4e-14	PPR repeat family
PPR_1	PF12854	386 - 416	2.7e-08	PPR repeat
PPR_2	PF13041	388 - 434	1.7e-09	PPR repeat family
PPR_3	PF13812	413 - 468	1.6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	419 - 451	1.3e-06	PPR repeat
PPR_2	PF13041	423 - 472	3.9e-14	PPR repeat family
PPR_long	PF17177	424 - 537	4e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	454 - 480	7.2e-08	PPR repeat
PPR_3	PF13812	488 - 540	8.5e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	493 - 542	8.9e-12	PPR repeat family
TPR_24	PF23276	545 - 659	1.7e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	558 - 591	2.2e-06	PPR repeat
PPR_2	PF13041	562 - 606	4.4e-11	PPR repeat family
PPR	PF01535	566 - 592	1.5e-06	PPR repeat
PPR_3	PF13812	588 - 642	1.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	599 - 645	1.1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12100
fragaria_vesca	FvH4_6g17750 FvH4_6g17750 FvH4_6g17750 FvH4_6g17750
malus_domestica	MD12G1016300.v1.1 MD14G1014400.v1.1
prunus_persica	Prupe.7G119000_v2.0.a1
pyrus_communis	pycom12g01340 pycom14g01210
rosa_chinensis	RchiOBHm_Chr3g0471971
rosa_laevigata	RLG00000024115
rosa_multiflora	Rmu_sc0000090.1_g000022
rosa_roxburghii	Rroxscaffold_6G00409400
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172800 Rh3BG198300 Rh3CG189400 Rh3CG196800 Rh3DG176100
rosa_wichuraiana	Rw3G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	339, 549, 1190
AccB1I	GGYRCC	1 cut(s)	1891
AccI	GTMKAC	3 cut(s)	658, 752, 889
AccIII	TCCGGA	1 cut(s)	847
AciI	CCGC	6 cut(s)	65, 242, 251, 254, 806, 1016
AclWI	GGATC	3 cut(s)	525, 749, 1705
AcoI	YGGCCR	2 cut(s)	114, 215
AcsI	RAATTY	2 cut(s)	986, 1060
AcuI	CTGAAG	2 cut(s)	1458, 1933
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	1029, 1970
AfiI	CCNNNNNNNGG	2 cut(s)	2041, 2044
AflIII	ACRYGT	1 cut(s)	447
AhdI	GACNNNNNGTC	1 cut(s)	1481
AjnI	CCWGG	2 cut(s)	725, 2064
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	6 cut(s)	989, 1061, 1207, 1236, 1455, 2011
Alw44I	GTGCAC	1 cut(s)	37
AlwI	GGATC	3 cut(s)	525, 749, 1705
Aor13HI	TCCGGA	1 cut(s)	847
AoxI	GGCC	6 cut(s)	114, 215, 950, 1252, 2032, 2061
ApaLI	GTGCAC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	986, 1060
AseI	ATTAAT	2 cut(s)	827, 1086
Asp700I	GAANNNNTTC	3 cut(s)	158, 329, 395
AspLEI	GCGC	1 cut(s)	1958
AspS9I	GGNCC	2 cut(s)	1858, 2062
AsuHPI	GGTGA	5 cut(s)	268, 488, 553, 698, 886
AsuII	TTCGAA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	1858
BaeGI	GKGCMC	2 cut(s)	41, 1827
BalI	TGGCCA	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	1891
BanII	GRGCYC	1 cut(s)	323
BarI	GAAGNNNNNNTAC	2 cut(s)	1215, 1247
BauI	CACGAG	1 cut(s)	939
BbsI	GAAGAC	1 cut(s)	1143
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	9 cut(s)	452, 610, 635, 662, 1030, 1202, 1292, 1345, 1762
BceAI	ACGGC	2 cut(s)	48, 250
BciT130I	CCWGG	2 cut(s)	727, 2066
BclI	TGATCA	1 cut(s)	691
BcoDI	GTCTC	6 cut(s)	989, 1061, 1207, 1236, 1455, 2011
BfaI	CTAG	2 cut(s)	134, 276
BfmI	CTRYAG	1 cut(s)	1308
BisI	GCNGC	2 cut(s)	131, 252
BlsI	GCNGC	2 cut(s)	132, 253
Bme1390I	CCNGG	2 cut(s)	727, 2066
Bme18I	GGWCC	1 cut(s)	1858
BmeRI	GACNNNNNGTC	1 cut(s)	1481
BmgT120I	GGNCC	2 cut(s)	1858, 2062
BmiI	GGNNCC	2 cut(s)	1183, 1893
BmrFI	CCNGG	2 cut(s)	727, 2066
BmsI	GCATC	5 cut(s)	42, 373, 969, 1584, 2113
BoxI	GACNNNNGTC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	1143
Bpu14I	TTCGAA	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	1908
BsaBI	GATNNNNATC	1 cut(s)	672
BsaJI	CCNNGG	4 cut(s)	1255, 1714, 2064, 2139
BsaWI	WCCGGW	1 cut(s)	847
BsaXI	ACNNNNNCTCC	4 cut(s)	476, 506, 2036, 2066
Bsc4I	CCNNNNNNNGG	2 cut(s)	2041, 2044
Bse1I	ACTGG	3 cut(s)	841, 1983, 2035
Bse3DI	GCAATG	1 cut(s)	2023
Bse8I	GATNNNNATC	1 cut(s)	672
BseAI	TCCGGA	1 cut(s)	847
BseBI	CCWGG	2 cut(s)	727, 2066
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	1255, 1714, 2064, 2139
BseGI	GGATG	8 cut(s)	516, 646, 856, 1213, 1431, 1600, 1622, 2107
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	2 cut(s)	2041, 2044
BseMI	GCAATG	1 cut(s)	2023
BseMII	CTCAG	3 cut(s)	668, 1252, 1754
BseNI	ACTGG	3 cut(s)	841, 1983, 2035
BseRI	GAGGAG	2 cut(s)	17, 824
BseSI	GKGCMC	2 cut(s)	41, 1827
BseX3I	CGGCCG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	117
BseYI	CCCAGC	2 cut(s)	56, 262
BsgI	GTGCAG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	218
BshFI	GGCC	6 cut(s)	116, 217, 952, 1254, 2034, 2063
BshNI	GGYRCC	1 cut(s)	1891
BshVI	ATCGAT	1 cut(s)	456
BsiEI	CGRYCG	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	3 cut(s)	218, 638, 848
BslFI	GGGAC	3 cut(s)	281, 1640, 1941
BslI	CCNNNNNNNGG	2 cut(s)	2041, 2044
BsmAI	GTCTC	6 cut(s)	989, 1061, 1207, 1236, 1455, 2011
BsmBI	CGTCTC	2 cut(s)	1061, 2011
BsmFI	GGGAC	3 cut(s)	281, 1640, 1941
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	6 cut(s)	116, 217, 952, 1254, 2034, 2063
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	3 cut(s)	41, 323, 1827
Bsp13I	TCCGGA	1 cut(s)	847
Bsp143I	GATC	6 cut(s)	453, 517, 691, 741, 1687, 1710
BspACI	CCGC	6 cut(s)	65, 242, 251, 254, 806, 1016
BspANI	GGCC	6 cut(s)	116, 217, 952, 1254, 2034, 2063
BspCNI	CTCAG	3 cut(s)	669, 1251, 1753
BspDI	ATCGAT	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	847
BspLI	GGNNCC	2 cut(s)	1183, 1893
BspPI	GGATC	3 cut(s)	525, 749, 1705
BspT104I	TTCGAA	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	1891
BsrDI	GCAATG	1 cut(s)	2023
BsrI	ACTGG	3 cut(s)	841, 1983, 2035
BssECI	CCNNGG	4 cut(s)	1255, 1714, 2064, 2139
BssMI	GATC	6 cut(s)	453, 517, 691, 741, 1687, 1710
BssNAI	GTATAC	2 cut(s)	659, 753
BssSI	CACGAG	1 cut(s)	939
BssT1I	CCWWGG	1 cut(s)	2139
Bst1107I	GTATAC	2 cut(s)	659, 753
Bst2BI	CACGAG	1 cut(s)	939
Bst2UI	CCWGG	2 cut(s)	727, 2066
Bst4CI	ACNGT	3 cut(s)	1718, 1763, 1934
Bst6I	CTCTTC	2 cut(s)	299, 606
BstBAI	YACGTR	1 cut(s)	1908
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	4 cut(s)	37, 249, 425, 1679
BstDEI	CTNAG	4 cut(s)	677, 1238, 1740, 2077
BstDSI	CCRYGG	1 cut(s)	1714
BstENI	CCTNNNNNAGG	1 cut(s)	2039
BstF5I	GGATG	8 cut(s)	516, 646, 856, 1213, 1431, 1600, 1622, 2107
BstHHI	GCGC	1 cut(s)	1958
BstKTI	GATC	6 cut(s)	456, 520, 694, 744, 1690, 1713
BstMAI	GTCTC	6 cut(s)	989, 1061, 1207, 1236, 1455, 2011
BstMBI	GATC	6 cut(s)	453, 517, 691, 741, 1687, 1710
BstMCI	CGRYCG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 565, 1898
BstNI	CCWGG	2 cut(s)	727, 2066
BstNSI	RCATGY	2 cut(s)	25, 2016
BstPAI	GACNNNNGTC	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	725, 2064
BstSFI	CTRYAG	1 cut(s)	1308
BstSLI	GKGCMC	2 cut(s)	41, 1827
BstSNI	TACGTA	1 cut(s)	1908
BstV1I	GCAGC	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	1143
BstZ17I	GTATAC	2 cut(s)	659, 753
BstZI	CGGCCG	1 cut(s)	215
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	6 cut(s)	116, 217, 952, 1254, 2034, 2063
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	1714
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	8 cut(s)	516, 646, 856, 1213, 1431, 1600, 1622, 2107
BtsI	GCAGTG	1 cut(s)	1471
BtsIMutI	CAGTG	5 cut(s)	1471, 1706, 1759, 1930, 1957
Cac8I	GCNNGC	4 cut(s)	37, 249, 425, 1679
CfoI	GCGC	1 cut(s)	1958
Cfr13I	GGNCC	2 cut(s)	1858, 2062
ClaI	ATCGAT	1 cut(s)	456
CseI	GACGC	1 cut(s)	1670
Csp6I	GTAC	2 cut(s)	1028, 1969
CviAII	CATG	8 cut(s)	22, 301, 626, 1141, 1246, 1403, 1730, 2013
CviQI	GTAC	2 cut(s)	1028, 1969
DdeI	CTNAG	4 cut(s)	677, 1238, 1740, 2077
DpnI	GATC	6 cut(s)	455, 519, 693, 743, 1689, 1712
DpnII	GATC	6 cut(s)	453, 517, 691, 741, 1687, 1710
DraIII	CACNNNGTG	1 cut(s)	36
DriI	GACNNNNNGTC	1 cut(s)	1481
EaeI	YGGCCR	2 cut(s)	114, 215
EagI	CGGCCG	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	299, 606
Eam1105I	GACNNNNNGTC	1 cut(s)	1481
EarI	CTCTTC	2 cut(s)	299, 606
EciI	GGCGGA	1 cut(s)	1031
EclXI	CGGCCG	1 cut(s)	215
Eco105I	TACGTA	1 cut(s)	1908
Eco130I	CCWWGG	1 cut(s)	2139
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	1858
Eco52I	CGGCCG	1 cut(s)	215
Eco57I	CTGAAG	2 cut(s)	1458, 1933
EcoNI	CCTNNNNNAGG	1 cut(s)	2039
EcoO109I	RGGNCCY	1 cut(s)	1858
EcoRII	CCWGG	2 cut(s)	725, 2064
EcoT14I	CCWWGG	1 cut(s)	2139
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	2139
Esp3I	CGTCTC	2 cut(s)	1061, 2011
FaeI	CATG	8 cut(s)	25, 304, 629, 1144, 1249, 1406, 1733, 2016
FaqI	GGGAC	3 cut(s)	281, 1640, 1941
FatI	CATG	8 cut(s)	21, 300, 625, 1140, 1245, 1402, 1729, 2012
FbaI	TGATCA	1 cut(s)	691
FblI	GTMKAC	3 cut(s)	658, 752, 889
Fnu4HI	GCNGC	2 cut(s)	131, 252
FokI	GGATG	8 cut(s)	523, 653, 863, 1220, 1438, 1587, 1629, 2114
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	131, 252
FspBI	CTAG	2 cut(s)	134, 276
GlaI	GCGC	1 cut(s)	1957
GluI	GCNGC	2 cut(s)	131, 252
GsaI	CCCAGC	2 cut(s)	60, 266
HaeIII	GGCC	6 cut(s)	116, 217, 952, 1254, 2034, 2063
HapII	CCGG	3 cut(s)	218, 638, 848
HgaI	GACGC	1 cut(s)	1670
HhaI	GCGC	1 cut(s)	1958
Hin1II	CATG	8 cut(s)	25, 304, 629, 1144, 1249, 1406, 1733, 2016
Hin6I	GCGC	1 cut(s)	1956
HinP1I	GCGC	1 cut(s)	1956
HincII	GTYRAC	2 cut(s)	890, 1792
HindII	GTYRAC	2 cut(s)	890, 1792
HinfI	GANTC	9 cut(s)	44, 197, 979, 1129, 1328, 1407, 1448, 1567, 1692
HpaII	CCGG	3 cut(s)	218, 638, 848
HphI	GGTGA	5 cut(s)	268, 488, 553, 698, 886
Hpy166II	GTNNAC	8 cut(s)	39, 228, 659, 753, 890, 1774, 1792, 1937
Hpy188III	TCNNGA	7 cut(s)	848, 1126, 1133, 1220, 1544, 1685, 2057
Hpy8I	GTNNAC	8 cut(s)	39, 228, 659, 753, 890, 1774, 1792, 1937
Hpy99I	CGWCG	1 cut(s)	1868
HpyCH4III	ACNGT	3 cut(s)	1718, 1763, 1934
HpyCH4IV	ACGT	5 cut(s)	449, 1070, 1802, 1907, 2004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 565, 1898
HpyF3I	CTNAG	4 cut(s)	677, 1238, 1740, 2077
HpySE526I	ACGT	5 cut(s)	449, 1070, 1802, 1907, 2004
Hsp92II	CATG	8 cut(s)	25, 304, 629, 1144, 1249, 1406, 1733, 2016
HspAI	GCGC	1 cut(s)	1956
Kpn2I	TCCGGA	1 cut(s)	847
Ksp22I	TGATCA	1 cut(s)	691
Kzo9I	GATC	6 cut(s)	453, 517, 691, 741, 1687, 1710
LmnI	GCTCC	1 cut(s)	30
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	5 cut(s)	42, 373, 969, 1584, 2113
MaeI	CTAG	2 cut(s)	134, 276
MaeII	ACGT	5 cut(s)	449, 1070, 1802, 1907, 2004
MaeIII	GTNAC	3 cut(s)	436, 541, 1665
MalI	GATC	6 cut(s)	455, 519, 693, 743, 1689, 1712
MboI	GATC	6 cut(s)	453, 517, 691, 741, 1687, 1710
MhlI	GDGCHC	3 cut(s)	41, 323, 1827
MlsI	TGGCCA	1 cut(s)	116
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	4 cut(s)	53, 206, 1401, 1457
MmeI	TCCRAC	4 cut(s)	42, 462, 588, 1397
Mox20I	TGGCCA	1 cut(s)	116
MroI	TCCGGA	1 cut(s)	847
MroXI	GAANNNNTTC	3 cut(s)	158, 329, 395
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	6 cut(s)	561, 827, 1086, 1158, 1656, 1814
MslI	CAYNNNNRTG	1 cut(s)	1719
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	3 cut(s)	218, 638, 848
MspR9I	CCNGG	2 cut(s)	727, 2066
Mva1269I	GAATGC	1 cut(s)	210
MvaI	CCWGG	2 cut(s)	727, 2066
MwoI	GCNNNNNNNGC	3 cut(s)	248, 565, 1898
NdeII	GATC	6 cut(s)	453, 517, 691, 741, 1687, 1710
NlaIII	CATG	8 cut(s)	25, 304, 629, 1144, 1249, 1406, 1733, 2016
NlaIV	GGNNCC	2 cut(s)	1183, 1893
NmeAIII	GCCGAG	1 cut(s)	1280
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	2 cut(s)	25, 2016
NspV	TTCGAA	1 cut(s)	152
PctI	GAATGC	1 cut(s)	210
PdmI	GAANNNNTTC	3 cut(s)	158, 329, 395
PfeI	GAWTC	5 cut(s)	979, 1129, 1328, 1567, 1692
PflFI	GACNNNGTC	1 cut(s)	1862
PkrI	GCNGC	2 cut(s)	132, 253
PleI	GAGTC	4 cut(s)	52, 205, 1401, 1456
PpsI	GAGTC	4 cut(s)	52, 205, 1401, 1456
Ppu21I	YACGTR	1 cut(s)	1908
PpuMI	RGGWCCY	1 cut(s)	1858
PshAI	GACNNNNGTC	1 cut(s)	102
PshBI	ATTAAT	2 cut(s)	827, 1086
PsiI	TTATAA	3 cut(s)	339, 549, 1190
Psp5II	RGGWCCY	1 cut(s)	1858
Psp6I	CCWGG	2 cut(s)	725, 2064
PspFI	CCCAGC	2 cut(s)	56, 262
PspGI	CCWGG	2 cut(s)	725, 2064
PspN4I	GGNNCC	2 cut(s)	1183, 1893
PspPI	GGNCC	2 cut(s)	1858, 2062
PspPPI	RGGWCCY	1 cut(s)	1858
PsyI	GACNNNGTC	1 cut(s)	1862
RsaI	GTAC	2 cut(s)	1029, 1970
RsaNI	GTAC	2 cut(s)	1028, 1969
RseI	CAYNNNNRTG	1 cut(s)	1719
SalI	GTCGAC	1 cut(s)	888
SaqAI	TTAA	6 cut(s)	561, 827, 1086, 1158, 1656, 1814
SatI	GCNGC	2 cut(s)	131, 252
Sau3AI	GATC	6 cut(s)	453, 517, 691, 741, 1687, 1710
Sau96I	GGNCC	2 cut(s)	1858, 2062
SchI	GAGTC	4 cut(s)	53, 206, 1401, 1457
ScrFI	CCNGG	2 cut(s)	727, 2066
SduI	GDGCHC	3 cut(s)	41, 323, 1827
SfaNI	GCATC	5 cut(s)	42, 373, 969, 1584, 2113
SfcI	CTRYAG	1 cut(s)	1308
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	1 cut(s)	1858
SmiMI	CAYNNNNRTG	1 cut(s)	1719
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SnaBI	TACGTA	1 cut(s)	1908
SsiI	CCGC	6 cut(s)	65, 242, 251, 254, 806, 1016
SspMI	CTAG	2 cut(s)	134, 276
StyD4I	CCNGG	2 cut(s)	725, 2064
StyI	CCWWGG	1 cut(s)	2139
TaaI	ACNGT	3 cut(s)	1718, 1763, 1934
TaiI	ACGT	5 cut(s)	452, 1073, 1805, 1910, 2007
TaqI	TCGA	8 cut(s)	152, 195, 399, 456, 666, 889, 1690, 1866
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	5 cut(s)	979, 1129, 1328, 1567, 1692
Tru1I	TTAA	6 cut(s)	561, 827, 1086, 1158, 1656, 1814
Tru9I	TTAA	6 cut(s)	561, 827, 1086, 1158, 1656, 1814
TscAI	CASTG	5 cut(s)	1471, 1713, 1766, 1937, 1957
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	9 cut(s)	317, 322, 417, 527, 867, 1569, 1577, 1889, 2133
TspGWI	ACGGA	2 cut(s)	56, 92
TspRI	CASTG	5 cut(s)	1471, 1713, 1766, 1937, 1957
Tth111I	GACNNNGTC	1 cut(s)	1862
VneI	GTGCAC	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	1858
VspI	ATTAAT	2 cut(s)	827, 1086
XagI	CCTNNNNNAGG	1 cut(s)	2039
XapI	RAATTY	2 cut(s)	986, 1060
XceI	RCATGY	2 cut(s)	25, 2016
XmiI	GTMKAC	3 cut(s)	658, 752, 889
XmnI	GAANNNNTTC	3 cut(s)	158, 329, 395
XspI	CTAG	2 cut(s)	134, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.