Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010490

Physical Location & Seq

Genomic Coordinates Forward (+)

861272 .. 863752

Gene Structure 2481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2481 bp

ATGGAAAGACGTGTCTATCTCCTTCCCAAATCCGTATTGAATGCCATCAACAAACCTCAAAATCCAATCTCAGTCCCTCTATTTTTCAATCTCTGCACAGACTCTGCTGACAACCAAGCTCATCAACCACAGATTGAAGGCCCAACAGAGAACCACAACCCCACCAACATCCATGACCAACAACGCCATGAGCAAGTCCGAAAACTCCGAGTCCTTCTCCAGCAGGGTCGCTCTGAAACAGCACGGAGGCTCATCAAGTCTCTCATTCTCCCTGGTTCACCCTTCTCTTCCCCCATCGAACTCTACACCCTGTTTTCTCTTTCTGCACCCTCCATGAAACCCACATTCTGCGACATGCTTTTAGCAGCTTGTTCTGAGTCTAAGATGCCGAATGAAGCGGTAGAATTGTACGGTTTGATGAGGAAAAGTGGTACACGCCCTTGCTTAGCTTCTGTCAATGTGATACTTGAATCTTTGGTGACTTCAAAACAATTTGGTAAGAGCCTTGAATTGTTTTCGGAGATTTTCGAGTTGGGTCAGGGCATTCGACCTGATAAATTCACTTATGGGAAGGCAATACAAGCTTCTGTAAAGTTAGGGGACCTGGAAAGGGCTGGTCAACTAGTGAATTCAATGAAGATGAAGCGGATGAATCCAGGTGTGTTTGTGTATAATGTTTTACTCGGCGGGTTGTGTAAAGAGAAGAAAATGATGGACGCACAGAAGGTGTTTGATGAAATGATTGAGGGAAAGGTGACCCCGAATTTGGTTACATACAATACGATGATTGATGGGTATTCTAAGGCGGGTGAGTTGGAGAAGGCCCTTGAATTGAGAGAGAGGATGAAGGATGAGAAAGTGGAAGCTAATATGGTCACATATAATACAATGCTCAGTGGACTTTGTCGGGCGAAGAGAATGGAGGACGCAAAAAGGATTTTGGAAGAGATGGATGCTCACAGCTTTGCACCTGATGGTTTTACTTATAGCATCCTCTTTGATGGGCATTTCAGGTGTGGGGATGGTGAGGGGTCACTGGCTTTATTTGAAGAAGCAATTAGGAAAGGTGTGAGGATTAATGGTTATACTTGTAGCATTTTGTTGAATGGGTTGTGCAAGGAAGGAAACATTGAGAAGGCGGAGGAGGTTTTGAAGAAACTAATGGAAACTGGTTTTATTCCAGATGTAGTAGTATATAATACTATTGTCAGTGGTTATTGTCGAAGGGGTGAGATAGACAAAGCCATTTCGGCCATTGAACAAATGGAAGTATGCGGGTTGAAGCCGAACTGCATCACCTTCAATTCTTTGATTGACAAGATCCGTGAGACAAAGGATATGGATATGGCTGGGGAATGGGTGAAGAACATGACAAAGAAGGGAATTTTTCCAAATTTGGAGACGTATAACATCCTTATTAATGGCTACGGGCAGATGTGTGCATTCGATAAGTGTTTCCAGATTGTTGAAGAGATGGAAAATAAGGGGATTAAGCCAAATATTGTGAGCTATGGTTCTCTTGTAAATGGTTTATGCAAGGACGGGAGGCCTCTTGAAGCTGAAATAGTACTGAGGGACATGCTAAGCAGAGGGGTTTTGCCAAATGCACAAATATATAATATCCTCATTGGTGGTTGCTGTACGGTGGGGAATCTGAAAGATGCTTACAGATTCCTTGATGAGATGGCGAAAACTGGGATAAGTCCAACACTTGTAACCTACAATGCACTCATTCATGGACTCTGCAAGAAAGGACGGTTGATGGAAGCTGAAGACTATGTATCTCAAATTACAAGTAGCGGTTATAGCCCGAATGTGATTTCATACAACTCCCTAATTTCAGGTTATTCTGATGCTGGAAACACCCAGAAATGTCTGGAATTGTTTGAAACTATCAAGAGTCTGGGCATGAAACCTACTTTGTATACATTTCATCCTCTAATTAGTAGGTGTATCAGGGAAGATATGGCATTAGCAGAGAAGCTATATAGTGAAATGCTACAGATGGGCTTGGTTCCTGACCGGGTTTTATATAATGCACTCATTCATGGTTACGCAGAGCACGGAGACACTCAAAAGGCACTTGCTTTGCACTCTGAGATGGTAAACCAGAATGTTTATGTTGACAGGATGACATATAATAGCTTGATTCTGGGGCACTTCAAGCAAGGACAAATTTCAGAGGTAAAGGACCTAGTAAATGATATGAAGGCTCAAGGATTGACTCCTAAAGCTGATACGTATAGCTTACTTGTTAAGGGACACTGTGAACTGAAGGACTTCAGTGGTGCCTATTGTTGGTACAGGGAACTGTTTGAGAATGGTTTTCTTCTAAATGCCTCGACGTGCCATGAACTTACATCTGGCCTTCAAAAGGAGGGGAGGTTGCGAGAGGCCGAGATTGTCTGTTCAGAAATGAGCGCCAAAGGAATGAATGACTGCAGCTCTAATGAGGATGTGTTTTCTGTTGCCAACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

827

Amino Acids

92.34

Weight (kDa)

6.07

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	180 - 229	1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	217 - 247	8.6e-08	PPR repeat
PPR_2	PF13041	219 - 265	4.8e-15	PPR repeat family
PPR_long	PF17177	238 - 342	1.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	242 - 299	3.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	252 - 283	1e-10	PPR repeat
PPR_2	PF13041	254 - 303	3.7e-18	PPR repeat family
PPR	PF01535	257 - 286	8.3e-10	PPR repeat
PPR_3	PF13812	280 - 332	8.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	287 - 317	2.7e-10	PPR repeat
PPR_2	PF13041	290 - 337	2e-15	PPR repeat family
PPR	PF01535	292 - 318	2.1e-07	PPR repeat
PPR_2	PF13041	332 - 373	4.3e-07	PPR repeat family
PPR_3	PF13812	348 - 406	6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	355 - 386	9.1e-06	PPR repeat
TPR_24	PF23276	364 - 474	2.9e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	391 - 423	7.6e-11	PPR repeat
PPR_2	PF13041	394 - 439	6.9e-14	PPR repeat family
PPR	PF01535	397 - 427	2.6e-06	PPR repeat
PPR_long	PF17177	419 - 510	1.1e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	420 - 479	7.1e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	444 - 476	1.1e-06	PPR repeat family
PPR_2	PF13041	464 - 513	1.5e-14	PPR repeat family
PPR_long	PF17177	482 - 563	1.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	495 - 527	6.3e-09	PPR repeat
PPR_2	PF13041	499 - 547	1.3e-12	PPR repeat family
PPR	PF01535	502 - 532	3.5e-06	PPR repeat
PPR_3	PF13812	523 - 579	1.4e-12	Pentatricopeptide repeat domain
PPR_long	PF17177	530 - 641	5e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	530 - 562	7.2e-10	PPR repeat
PPR_2	PF13041	534 - 583	1.9e-16	PPR repeat family
PPR_1	PF12854	566 - 592	1.3e-10	PPR repeat
PPR_2	PF13041	569 - 616	3.3e-12	PPR repeat family
PPR	PF01535	572 - 601	5.2e-06	PPR repeat
TPR_24	PF23276	594 - 700	1.9e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	599 - 651	5e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	604 - 651	3.3e-10	PPR repeat family
PPR	PF01535	607 - 636	4.3e-06	PPR repeat
PPR_1	PF12854	669 - 702	5.3e-07	PPR repeat
PPR_2	PF13041	673 - 717	4.9e-11	PPR repeat family
PPR	PF01535	676 - 705	3.9e-06	PPR repeat
PPR_3	PF13812	698 - 753	1.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	710 - 756	3.2e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12100
fragaria_vesca	FvH4_6g17750 FvH4_6g17750 FvH4_6g17750 FvH4_6g17750
malus_domestica	MD12G1016300.v1.1 MD14G1014400.v1.1
prunus_persica	Prupe.7G119000_v2.0.a1
pyrus_communis	pycom12g01340 pycom14g01210
rosa_chinensis	RchiOBHm_Chr3g0471971
rosa_laevigata	RLG00000024115
rosa_multiflora	Rmu_sc0000090.1_g000022
rosa_roxburghii	Rroxscaffold_6G00409400
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172800 Rh3BG198300 Rh3CG189400 Rh3CG196800 Rh3DG176100
rosa_wichuraiana	Rw3G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	2288
AccI	GTMKAC	1 cut(s)	1925
AciI	CCGC	7 cut(s)	398, 646, 687, 806, 1139, 1275, 1800
AclWI	GGATC	1 cut(s)	1315
AcoI	YGGCCR	1 cut(s)	1251
AcsI	RAATTY	6 cut(s)	557, 628, 763, 1383, 1393, 2175
AcuI	CTGAAG	3 cut(s)	1791, 2266, 2294
AfaI	GTAC	5 cut(s)	410, 433, 1569, 1642, 2303
AfiI	CCNNNNNNNGG	4 cut(s)	610, 766, 2298, 2374
AflIII	ACRYGT	1 cut(s)	10
AhlI	ACTAGT	1 cut(s)	622
AjiI	CACGTC	2 cut(s)	11, 2346
AjnI	CCWGG	3 cut(s)	271, 603, 655
Alw21I	GWGCWC	1 cut(s)	2064
Alw26I	GTCTC	4 cut(s)	264, 1322, 1394, 2061
AlwI	GGATC	1 cut(s)	1315
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	6 cut(s)	139, 822, 1251, 1547, 2365, 2394
ApeKI	GCWGC	2 cut(s)	365, 2442
ApoI	RAATTY	6 cut(s)	557, 628, 763, 1383, 1393, 2175
ArsI	GACNNNNNNTTYG	2 cut(s)	748, 780
AseI	ATTAAT	2 cut(s)	1077, 1419
Asp700I	GAANNNNTTC	1 cut(s)	2279
AspLEI	GCGC	1 cut(s)	2423
AspS9I	GGNCC	4 cut(s)	140, 601, 823, 2191
AsuC2I	CCSGG	1 cut(s)	2024
AsuHPI	GGTGA	8 cut(s)	270, 490, 766, 821, 1037, 1241, 1288, 1372
AvaII	GGWCC	2 cut(s)	601, 2191
BaeGI	GKGCMC	1 cut(s)	2160
BanI	GGYRCC	1 cut(s)	2288
BbsI	GAAGAC	1 cut(s)	1779
Bbv12I	GWGCWC	1 cut(s)	2064
BbvI	GCAGC	2 cut(s)	377, 2454
BciT130I	CCWGG	3 cut(s)	273, 605, 657
BcnI	CCSGG	1 cut(s)	2024
BcoDI	GTCTC	4 cut(s)	264, 1322, 1394, 2061
BcuI	ACTAGT	1 cut(s)	622
BfaI	CTAG	3 cut(s)	623, 2195, 2479
BfmI	CTRYAG	2 cut(s)	2000, 2440
BfoI	RGCGCY	1 cut(s)	2424
BglI	GCCNNNNNGGC	1 cut(s)	1250
BisI	GCNGC	2 cut(s)	366, 2443
BlpI	GCTNAGC	2 cut(s)	445, 1583
BlsI	GCNGC	2 cut(s)	367, 2444
BmcAI	AGTACT	1 cut(s)	1569
Bme1390I	CCNGG	4 cut(s)	273, 605, 657, 2024
Bme18I	GGWCC	2 cut(s)	601, 2191
BmgBI	CACGTC	2 cut(s)	11, 2346
BmgT120I	GGNCC	4 cut(s)	140, 601, 823, 2191
BmiI	GGNNCC	3 cut(s)	602, 2016, 2290
BmrFI	CCNGG	4 cut(s)	273, 605, 657, 2024
BmrI	ACTGGG	1 cut(s)	1704
BmsI	GCATC	6 cut(s)	375, 943, 999, 1302, 1651, 1843
BmuI	ACTGGG	1 cut(s)	1704
BpiI	GAAGAC	1 cut(s)	1779
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
BpmI	CTGGAG	1 cut(s)	203
Bpu1102I	GCTNAGC	2 cut(s)	445, 1583
BpuEI	CTTGAG	1 cut(s)	2199
BpuMI	CCSGG	1 cut(s)	2024
BsaAI	YACGTR	1 cut(s)	2241
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	2369, 2399
Bsc4I	CCNNNNNNNGG	4 cut(s)	610, 766, 2298, 2374
Bse1I	ACTGG	3 cut(s)	1041, 1174, 1699
BseBI	CCWGG	3 cut(s)	273, 605, 657
BseDI	CCNNGG	1 cut(s)	271
BseLI	CCNNNNNNNGG	4 cut(s)	610, 766, 2298, 2374
BseMII	CTCAG	5 cut(s)	84, 366, 907, 1562, 2088
BseNI	ACTGG	3 cut(s)	1041, 1174, 1699
BseRI	GAGGAG	1 cut(s)	1157
BseSI	GKGCMC	1 cut(s)	2160
BseXI	GCAGC	2 cut(s)	377, 2454
BseYI	CCCAGC	1 cut(s)	1349
BsgI	GTGCAG	2 cut(s)	79, 309
BshFI	GGCC	6 cut(s)	141, 824, 1253, 1549, 2367, 2396
BshNI	GGYRCC	1 cut(s)	2288
BsiHKAI	GWGCWC	1 cut(s)	2064
BsiSI	CCGG	1 cut(s)	2023
BslFI	GGGAC	4 cut(s)	59, 614, 1589, 2274
BslI	CCNNNNNNNGG	4 cut(s)	610, 766, 2298, 2374
BsmAI	GTCTC	4 cut(s)	264, 1322, 1394, 2061
BsmBI	CGTCTC	1 cut(s)	1394
BsmFI	GGGAC	4 cut(s)	59, 614, 1589, 2274
BsmI	GAATGC	3 cut(s)	46, 543, 1442
BsnI	GGCC	6 cut(s)	141, 824, 1253, 1549, 2367, 2396
Bsp1286I	GDGCHC	2 cut(s)	2064, 2160
Bsp143I	GATC	1 cut(s)	1320
Bsp1720I	GCTNAGC	2 cut(s)	445, 1583
BspACI	CCGC	7 cut(s)	398, 646, 687, 806, 1139, 1275, 1800
BspANI	GGCC	6 cut(s)	141, 824, 1253, 1549, 2367, 2396
BspCNI	CTCAG	5 cut(s)	83, 367, 906, 1563, 2089
BspLI	GGNNCC	3 cut(s)	602, 2016, 2290
BspMAI	CTGCAG	1 cut(s)	2444
BspPI	GGATC	1 cut(s)	1315
BspT107I	GGYRCC	1 cut(s)	2288
BsrI	ACTGG	3 cut(s)	1041, 1174, 1699
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	1320
BssNAI	GTATAC	1 cut(s)	1926
Bst1107I	GTATAC	1 cut(s)	1926
Bst2UI	CCWGG	3 cut(s)	273, 605, 657
Bst4CI	ACNGT	5 cut(s)	413, 1645, 1758, 2267, 2313
Bst6I	CTCTTC	4 cut(s)	292, 908, 939, 1464
BstBAI	YACGTR	1 cut(s)	2241
BstDEI	CTNAG	9 cut(s)	70, 375, 381, 445, 801, 893, 1571, 1583, 2097
BstEII	GGTNACC	1 cut(s)	754
BstENI	CCTNNNNNAGG	1 cut(s)	2372
BstH2I	RGCGCY	1 cut(s)	2424
BstHHI	GCGC	1 cut(s)	2423
BstKTI	GATC	1 cut(s)	1323
BstMAI	GTCTC	4 cut(s)	264, 1322, 1394, 2061
BstMBI	GATC	1 cut(s)	1320
BstMWI	GCNNNNNNNGC	4 cut(s)	581, 1250, 1806, 2164
BstNI	CCWGG	3 cut(s)	273, 605, 657
BstNSI	RCATGY	2 cut(s)	358, 1582
BstPI	GGTNACC	1 cut(s)	754
BstSCI	CCNGG	4 cut(s)	271, 603, 655, 2022
BstSFI	CTRYAG	2 cut(s)	2000, 2440
BstSLI	GKGCMC	1 cut(s)	2160
BstSNI	TACGTA	1 cut(s)	2241
BstV1I	GCAGC	2 cut(s)	377, 2454
BstV2I	GAAGAC	1 cut(s)	1779
BstX2I	RGATCY	1 cut(s)	1320
BstYI	RGATCY	1 cut(s)	1320
BstZ17I	GTATAC	1 cut(s)	1926
BsuRI	GGCC	6 cut(s)	141, 824, 1253, 1549, 2367, 2396
BtrI	CACGTC	2 cut(s)	11, 2346
BtsIMutI	CAGTG	5 cut(s)	901, 1034, 1216, 2263, 2290
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	2423
Cfr13I	GGNCC	4 cut(s)	140, 601, 823, 2191
CseI	GACGC	2 cut(s)	725, 935
Csp6I	GTAC	5 cut(s)	409, 432, 1568, 1641, 2302
CviQI	GTAC	5 cut(s)	409, 432, 1568, 1641, 2302
DdeI	CTNAG	9 cut(s)	70, 375, 381, 445, 801, 893, 1571, 1583, 2097
DpnI	GATC	1 cut(s)	1322
DpnII	GATC	1 cut(s)	1320
EaeI	YGGCCR	1 cut(s)	1251
Eam1104I	CTCTTC	4 cut(s)	292, 908, 939, 1464
EarI	CTCTTC	4 cut(s)	292, 908, 939, 1464
EciI	GGCGGA	1 cut(s)	1154
Eco105I	TACGTA	1 cut(s)	2241
Eco147I	AGGCCT	1 cut(s)	1549
Eco47I	GGWCC	2 cut(s)	601, 2191
Eco57I	CTGAAG	3 cut(s)	1791, 2266, 2294
Eco91I	GGTNACC	1 cut(s)	754
EcoNI	CCTNNNNNAGG	1 cut(s)	2372
EcoO109I	RGGNCCY	3 cut(s)	601, 823, 2191
EcoO65I	GGTNACC	1 cut(s)	754
EcoRI	GAATTC	1 cut(s)	628
EcoRII	CCWGG	3 cut(s)	271, 603, 655
Esp3I	CGTCTC	1 cut(s)	1394
FaqI	GGGAC	4 cut(s)	59, 614, 1589, 2274
FauI	CCCGC	3 cut(s)	680, 799, 1268
FblI	GTMKAC	1 cut(s)	1925
Fnu4HI	GCNGC	2 cut(s)	366, 2443
Fsp4HI	GCNGC	2 cut(s)	366, 2443
FspBI	CTAG	3 cut(s)	623, 2195, 2479
GlaI	GCGC	1 cut(s)	2422
GluI	GCNGC	2 cut(s)	366, 2443
GsaI	CCCAGC	1 cut(s)	1353
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	2424
HaeIII	GGCC	6 cut(s)	141, 824, 1253, 1549, 2367, 2396
HapII	CCGG	1 cut(s)	2023
HgaI	GACGC	2 cut(s)	725, 935
HhaI	GCGC	1 cut(s)	2423
Hin6I	GCGC	1 cut(s)	2421
HinP1I	GCGC	1 cut(s)	2421
HincII	GTYRAC	2 cut(s)	620, 2125
HindII	GTYRAC	2 cut(s)	620, 2125
HindIII	AAGCTT	1 cut(s)	582
HpaII	CCGG	1 cut(s)	2023
HphI	GGTGA	8 cut(s)	270, 490, 766, 821, 1037, 1241, 1288, 1372
Hpy166II	GTNNAC	8 cut(s)	278, 434, 620, 899, 1926, 2107, 2125, 2270
Hpy188III	TCNNGA	6 cut(s)	1181, 1459, 1553, 1877, 1897, 2018
Hpy8I	GTNNAC	8 cut(s)	278, 434, 620, 899, 1926, 2107, 2125, 2270
Hpy99I	CGWCG	1 cut(s)	2347
HpyCH4III	ACNGT	5 cut(s)	413, 1645, 1758, 2267, 2313
HpyCH4IV	ACGT	5 cut(s)	10, 1403, 2240, 2345, 2475
HpyF10VI	GCNNNNNNNGC	4 cut(s)	581, 1250, 1806, 2164
HpyF3I	CTNAG	9 cut(s)	70, 375, 381, 445, 801, 893, 1571, 1583, 2097
HpySE526I	ACGT	5 cut(s)	10, 1403, 2240, 2345, 2475
HspAI	GCGC	1 cut(s)	2421
Kzo9I	GATC	1 cut(s)	1320
Lsp1109I	GCAGC	2 cut(s)	377, 2454
LweI	GCATC	6 cut(s)	375, 943, 999, 1302, 1651, 1843
MaeI	CTAG	3 cut(s)	623, 2195, 2479
MaeII	ACGT	5 cut(s)	10, 1403, 2240, 2345, 2475
MaeIII	GTNAC	7 cut(s)	478, 754, 769, 874, 1032, 1714, 2051
MalI	GATC	1 cut(s)	1322
MboI	GATC	1 cut(s)	1320
MflI	RGATCY	1 cut(s)	1320
MhlI	GDGCHC	2 cut(s)	2064, 2160
MlyI	GAGTC	6 cut(s)	95, 219, 386, 1734, 1909, 2218
MmeI	TCCRAC	2 cut(s)	795, 1730
MroXI	GAANNNNTTC	1 cut(s)	2279
MseI	TTAA	4 cut(s)	1077, 1419, 1491, 2256
MspI	CCGG	1 cut(s)	2023
MspR9I	CCNGG	4 cut(s)	273, 605, 657, 2024
Mva1269I	GAATGC	3 cut(s)	46, 543, 1442
MvaI	CCWGG	3 cut(s)	273, 605, 657
MwoI	GCNNNNNNNGC	4 cut(s)	581, 1250, 1806, 2164
NciI	CCSGG	1 cut(s)	2024
NdeII	GATC	1 cut(s)	1320
NlaIV	GGNNCC	3 cut(s)	602, 2016, 2290
NmeAIII	GCCGAG	2 cut(s)	663, 2422
NmuCI	GTSAC	4 cut(s)	478, 754, 874, 1032
NspI	RCATGY	2 cut(s)	358, 1582
PceI	AGGCCT	1 cut(s)	1549
PctI	GAATGC	3 cut(s)	46, 543, 1442
PdmI	GAANNNNTTC	1 cut(s)	2279
PfeI	GAWTC	5 cut(s)	470, 652, 1651, 1671, 2149
PflFI	GACNNNGTC	1 cut(s)	903
PkrI	GCNGC	2 cut(s)	367, 2444
PleI	GAGTC	6 cut(s)	95, 218, 385, 1734, 1908, 2218
PpsI	GAGTC	6 cut(s)	95, 218, 385, 1734, 1908, 2218
Ppu21I	YACGTR	1 cut(s)	2241
PpuMI	RGGWCCY	2 cut(s)	601, 2191
PshBI	ATTAAT	2 cut(s)	1077, 1419
Psp5II	RGGWCCY	2 cut(s)	601, 2191
Psp6I	CCWGG	3 cut(s)	271, 603, 655
PspEI	GGTNACC	1 cut(s)	754
PspFI	CCCAGC	1 cut(s)	1349
PspGI	CCWGG	3 cut(s)	271, 603, 655
PspN4I	GGNNCC	3 cut(s)	602, 2016, 2290
PspPI	GGNCC	4 cut(s)	140, 601, 823, 2191
PspPPI	RGGWCCY	2 cut(s)	601, 2191
PstI	CTGCAG	1 cut(s)	2444
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	1320
PsyI	GACNNNGTC	1 cut(s)	903
RsaI	GTAC	5 cut(s)	410, 433, 1569, 1642, 2303
RsaNI	GTAC	5 cut(s)	409, 432, 1568, 1641, 2302
SaqAI	TTAA	4 cut(s)	1077, 1419, 1491, 2256
SatI	GCNGC	2 cut(s)	366, 2443
Sau3AI	GATC	1 cut(s)	1320
Sau96I	GGNCC	4 cut(s)	140, 601, 823, 2191
ScaI	AGTACT	1 cut(s)	1569
SchI	GAGTC	6 cut(s)	95, 219, 386, 1734, 1909, 2218
ScrFI	CCNGG	4 cut(s)	273, 605, 657, 2024
SduI	GDGCHC	2 cut(s)	2064, 2160
SfaNI	GCATC	6 cut(s)	375, 943, 999, 1302, 1651, 1843
SfcI	CTRYAG	2 cut(s)	2000, 2440
SinI	GGWCC	2 cut(s)	601, 2191
SmlI	CTYRAG	1 cut(s)	2214
SmoI	CTYRAG	1 cut(s)	2214
SnaBI	TACGTA	1 cut(s)	2241
SpeI	ACTAGT	1 cut(s)	622
SseBI	AGGCCT	1 cut(s)	1549
SsiI	CCGC	7 cut(s)	398, 646, 687, 806, 1139, 1275, 1800
SspI	AATATT	1 cut(s)	1501
SspMI	CTAG	3 cut(s)	623, 2195, 2479
StuI	AGGCCT	1 cut(s)	1549
StyD4I	CCNGG	4 cut(s)	271, 603, 655, 2022
TaaI	ACNGT	5 cut(s)	413, 1645, 1758, 2267, 2313
TaiI	ACGT	5 cut(s)	13, 1406, 2243, 2348, 2478
TaqI	TCGA	6 cut(s)	297, 528, 547, 1222, 1446, 2342
TatI	WGTACW	1 cut(s)	1567
TfiI	GAWTC	5 cut(s)	470, 652, 1651, 1671, 2149
Tru1I	TTAA	4 cut(s)	1077, 1419, 1491, 2256
Tru9I	TTAA	4 cut(s)	1077, 1419, 1491, 2256
TscAI	CASTG	5 cut(s)	901, 1041, 1216, 2270, 2290
TseFI	GTSAC	4 cut(s)	478, 754, 874, 1032
TseI	GCWGC	2 cut(s)	365, 2442
Tsp45I	GTSAC	4 cut(s)	478, 754, 874, 1032
TspGWI	ACGGA	4 cut(s)	22, 259, 1313, 2079
TspRI	CASTG	5 cut(s)	901, 1041, 1216, 2270, 2290
Tth111I	GACNNNGTC	1 cut(s)	903
VpaK11BI	GGWCC	2 cut(s)	601, 2191
VspI	ATTAAT	2 cut(s)	1077, 1419
XagI	CCTNNNNNAGG	1 cut(s)	2372
XapI	RAATTY	6 cut(s)	557, 628, 763, 1383, 1393, 2175
XceI	RCATGY	2 cut(s)	358, 1582
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1261
XmiI	GTMKAC	1 cut(s)	1925
XmnI	GAANNNNTTC	1 cut(s)	2279
XspI	CTAG	3 cut(s)	623, 2195, 2479
ZrmI	AGTACT	1 cut(s)	1569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.