Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010490

Physical Location & Seq

Genomic Coordinates Reverse (-)

15615892 .. 15619396

Gene Structure 3505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG176100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGGCAAGGCGCGTCTCTCTTCTTCTTCTTCCTAAGTCTCTACCCACCAAAACCCAAAACCTCCGATCAGTTTCTCTCTGTACAGACTCCGACCCAAGAATCCAACCCTCCAATTCAAACCACCAAGACCAGCAACGCCATGAACAAGTCCGCAAGCTCCGAATCCTCCTCCAGCAGGGCCGAACCGACACCGCAAATCGCTTCATCAAGTCCCTCATTCTCCCCACCTCGCCTTTCTCCTCCCCCTCCGACCTTTACAACCTCTTCTCCCTCTCCGCTCCCTCCATGACACCCACATTCTCCGACATGCTCCTCACGGCGTGCACGGAGTCCAAGATGCCCAGCGAAGCAGTTGAGTTGTATGGTCTGATGAGAAAGAGCGACCTCCGTCCGAGTTTGGCCACTCTCAATATGCTGCTAGAGTGCTTGGTGGCTTCGAAAATGTTCAGAAAAACCCTCGAGTTGTTTTCGCAGATTTTCGAGTCTGGTAAGGGCATTCGGCCGGATAAGTTCACTTACGGCAAGGCGGTGCAGGCGGCGGTGAAGCTGGGGGACTTGACTAGGGCTGTTGAGCTTGTGGAGTGCATGAAGAGAGAGAGGTTGAGTCCGAATGTGTTCATTTATAATGTTTTGATTAGTGGGTTGTGTAAAGAGAAGAAAATGAGGGATGCAGAGAAGGTGTTCGATGAAATGCGTGAGAGGAGGGGAGTGCCGACTTTGGTTACTTACAACACGTTGATCGATGGGTATTGTAAGGTGGGTGAGTTGGAGAAGGGGTTTGGGTTGAGAGAGAGGATGAAGGATCAGAAGGTGGAAGCGAATGTGGTGACTTATAATACAATGCTTAATGGGCTTTGTAAGGCAAAGAGAATGGAGGAAGTGAAAGGGGTGTTGGAAGAGATGGAGGCTCGTGGATTTGTGCCGGATGGTTTTACTTATAGTATACTTTTCGATGGACATCTGAGGTGTGGTGATGATCAGGGCGTGTTGGCTTTGTTTGAAGAAGCAACCAGGAAAGGTGTGAGGATCAATGGGTATACTTGTAGTATTTTGTTGAATGGGTTGTGCAAGAAAGGAAAGATAGAGAAAGCGGAGGAGATTTTGAAGAAATTGATGGAAACTGGTTTTGTTCCGGATGAAGTAGTGTATAATACTCTGGTGAGTGGATATTGTCGACAATCTGACATTGACAGAGCCATTTTGGTCATTGAGAAAATGGAAGCTCGTGGGTTGAGGCCAAATTGCATCACTTTCAATTCTTTAATTCACAAATTCTGTGAGACAAAGGATATGGATAGGGCGGAGGAATGGGTACAGAAGATGGTAAAGAAGGGAGTTTCGCCGAATTTGGAGACGTATAACACCCTTATTAATGGCTACGGGCAGATTTGCACATTTGATAAGTGTTTCCAGATTCTTGAAGACATGGAAAGTAAGGCAATTAAACCAAATGTTGTGAGCTATGGTTCCCTTATAAATTGTTTATGCAAGGATGGGAGACTTCTTGAAGCTGAAATACAACTCAGAGACATGGTAGGCCGAGGGGTTTTGCCAAATGCACAGATATATAATATGCTCATTGATGGTAGCTCTACAGAGGGGAAGCTGAAAGATGCTTTCAGATTTTTTGATGAGATGGCAAAAAATGGGATAAGTCCAACACTTGCAACCTACAATGCAATCATACATGGACTCTGCAAGAAAGGAAGGATGATTGAAGCTGAAGATTATGTGTCTCAAATTACAAGCAGTGGTTATAGTCCCGATGTCATCACATACAACTCCCTAATTTCAGGTTATTCTGATACAACAAACACCCAGAAGTGTCTGGAATTATATGAAACTATGAAGAATCTGGGCATCAAACCTACTTTGAATACATATCATCCTTTAATTAGTGGATGTAGCAGGGACAATATGGTATTAGCAGAAAAGTTGTTTAATGAGATGTTACAAATGGGCTTGCATCCTGATCGAATCATATATAATGCACTCATCCACGGTTATGCAGAGCATGGAGATACTCAGAAGGCACTTTCTTTGCACTGTGAGATGGTAAACCAGGAAATCAATGTTGACAAGATGACGTATAATAGCTTAATTCTTGGGCACTTCAAACAAGGAAAGGTGTCAGAGGTAAAGGACCTCGTCAATGATATGAAGGCTAAAGGATTGGCACCTAAAGCTGATACGTATAACTTACTTGTGAAGGGACACTGTGAACTAAAGGACTTCAGTGGCGCATATTTTTGGTACAGGGAACTGGTTGAGAATGGTTATCTTCTAAACGTCTCCACATGCAATGAGCTTACAACTGGCCTCCAAAAGGAGGGGAGGTTTCAAGAGGCCCAGGTTATCTGCTTAGAAATGAGTGCTAAAGGAATGGATGATGTTAGCTCTAATGAAGATGCAATTTCTGTTGCCAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

810

Amino Acids

91.18

Weight (kDa)

7.4

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	103 - 231	3.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	164 - 213	4.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	201 - 232	5.4e-12	PPR repeat
PPR_2	PF13041	203 - 243	3e-12	PPR repeat family
PPR	PF01535	207 - 234	1.8e-08	PPR repeat
PPR_3	PF13812	211 - 250	4.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	237 - 267	4.5e-10	PPR repeat
PPR_2	PF13041	238 - 287	4.1e-18	PPR repeat family
PPR	PF01535	241 - 269	7.3e-08	PPR repeat
PPR_1	PF12854	271 - 302	8.9e-09	PPR repeat
PPR_2	PF13041	274 - 320	6.8e-17	PPR repeat family
PPR	PF01535	276 - 306	1.1e-08	PPR repeat
PPR_long	PF17177	323 - 456	5.6e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	332 - 390	9.7e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	348 - 457	3.3e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	375 - 407	6.1e-10	PPR repeat
PPR_2	PF13041	378 - 426	3.9e-14	PPR repeat family
PPR	PF01535	381 - 411	6.7e-06	PPR repeat
PPR_3	PF13812	402 - 461	4.8e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	409 - 442	2.6e-07	PPR repeat
PPR_2	PF13041	413 - 460	6.3e-14	PPR repeat family
PPR_long	PF17177	414 - 500	4.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_long	PF17177	435 - 534	8.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	448 - 497	5.7e-14	PPR repeat family
PPR_1	PF12854	481 - 511	3.1e-08	PPR repeat
PPR_2	PF13041	483 - 529	1.6e-09	PPR repeat family
PPR_3	PF13812	508 - 563	1.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	514 - 546	3e-08	PPR repeat
PPR_long	PF17177	517 - 632	2.4e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	518 - 567	1.3e-15	PPR repeat family
TPR_24	PF23276	523 - 615	5.2e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	549 - 576	5.6e-08	PPR repeat
PPR_2	PF13041	553 - 601	3.1e-12	PPR repeat family
PPR_3	PF13812	583 - 635	1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	588 - 637	2.4e-12	PPR repeat family
TPR_24	PF23276	639 - 754	4.2e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	653 - 686	1.2e-06	PPR repeat
PPR_2	PF13041	657 - 701	9.5e-11	PPR repeat family
PPR	PF01535	661 - 687	2e-06	PPR repeat
PPR_3	PF13812	683 - 737	1.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	694 - 740	5.9e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12100
fragaria_vesca	FvH4_6g17750 FvH4_6g17750 FvH4_6g17750 FvH4_6g17750
malus_domestica	MD12G1016300.v1.1 MD14G1014400.v1.1
prunus_persica	Prupe.7G119000_v2.0.a1
pyrus_communis	pycom12g01340 pycom14g01210
rosa_chinensis	RchiOBHm_Chr3g0471971
rosa_laevigata	RLG00000024115
rosa_multiflora	Rmu_sc0000090.1_g000022
rosa_roxburghii	Rroxscaffold_6G00409400
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172800 Rh3BG198300 Rh3CG189400 Rh3CG196800 Rh3DG176100
rosa_wichuraiana	Rw3G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	624, 834, 1475
AccB1I	GGYRCC	1 cut(s)	2176
AccBSI	CCGCTC	1 cut(s)	278
AccI	GTMKAC	3 cut(s)	943, 1037, 1174
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	1132
AciI	CCGC	8 cut(s)	151, 192, 276, 527, 536, 539, 1091, 1301
AclWI	GGATC	2 cut(s)	810, 1034
AcoI	YGGCCR	2 cut(s)	399, 500
AcsI	RAATTY	2 cut(s)	1271, 1345
AcuI	CTGAAG	2 cut(s)	1743, 2218
AdeI	CACNNNGTG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	82, 1314, 2255
AfiI	CCNNNNNNNGG	3 cut(s)	175, 2326, 2329
AflIII	ACRYGT	1 cut(s)	732
AjnI	CCWGG	3 cut(s)	1010, 2061, 2349
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	8 cut(s)	19, 42, 1274, 1346, 1492, 1521, 1740, 2296
Alw44I	GTGCAC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	810, 1034
Ama87I	CYCGRG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	1132
AoxI	GGCC	7 cut(s)	178, 399, 500, 1235, 1537, 2317, 2346
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	2 cut(s)	1271, 1345
AseI	ATTAAT	1 cut(s)	1371
Asp700I	GAANNNNTTC	3 cut(s)	443, 614, 680
AspLEI	GCGC	2 cut(s)	12, 2243
AspS9I	GGNCC	3 cut(s)	178, 2143, 2347
AsuHPI	GGTGA	5 cut(s)	553, 773, 838, 983, 1171
AsuII	TTCGAA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	2143
BaeGI	GKGCMC	2 cut(s)	326, 2112
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	2176
BarI	GAAGNNNNNNTAC	2 cut(s)	1500, 1532
BauI	CACGAG	2 cut(s)	909, 1224
BbsI	GAAGAC	1 cut(s)	1428
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	402
BceAI	ACGGC	2 cut(s)	333, 535
BcgI	CGANNNNNNTGC	2 cut(s)	1955, 1989
BciT130I	CCWGG	3 cut(s)	1012, 2063, 2351
BclI	TGATCA	1 cut(s)	976
BcoDI	GTCTC	8 cut(s)	19, 42, 1274, 1346, 1492, 1521, 1740, 2296
BfaI	CTAG	2 cut(s)	419, 561
BfmI	CTRYAG	1 cut(s)	1593
BisI	GCNGC	2 cut(s)	416, 537
BlsI	GCNGC	2 cut(s)	417, 538
Bme1390I	CCNGG	3 cut(s)	1012, 2063, 2351
Bme18I	GGWCC	1 cut(s)	2143
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	3 cut(s)	178, 2143, 2347
BmiI	GGNNCC	2 cut(s)	1468, 2178
BmrFI	CCNGG	3 cut(s)	1012, 2063, 2351
BmsI	GCATC	7 cut(s)	327, 658, 1254, 1603, 1869, 1975, 2398
BoxI	GACNNNNGTC	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	1428
BpmI	CTGGAG	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	437
Bsa29I	ATCGAT	1 cut(s)	741
BsaAI	YACGTR	1 cut(s)	2193
BsaBI	GATNNNNATC	1 cut(s)	957
BsaJI	CCNNGG	4 cut(s)	1540, 1999, 2349, 2424
BsaWI	WCCGGW	1 cut(s)	1132
BsaXI	ACNNNNNCTCC	6 cut(s)	251, 281, 761, 791, 2321, 2351
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 2326, 2329
Bse1I	ACTGG	3 cut(s)	1126, 2268, 2320
Bse3DI	GCAATG	1 cut(s)	2308
Bse8I	GATNNNNATC	1 cut(s)	957
BseAI	TCCGGA	1 cut(s)	1132
BseBI	CCWGG	3 cut(s)	1012, 2063, 2351
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	4 cut(s)	1540, 1999, 2349, 2424
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	3 cut(s)	175, 2326, 2329
BseMI	GCAATG	1 cut(s)	2308
BseMII	CTCAG	3 cut(s)	953, 1537, 2039
BseNI	ACTGG	3 cut(s)	1126, 2268, 2320
BseRI	GAGGAG	5 cut(s)	158, 229, 302, 715, 1109
BseSI	GKGCMC	2 cut(s)	326, 2112
BseX3I	CGGCCG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	402
BseYI	CCCAGC	2 cut(s)	341, 547
BsgI	GTGCAG	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	503
BshFI	GGCC	7 cut(s)	180, 401, 502, 1237, 1539, 2319, 2348
BshNI	GGYRCC	1 cut(s)	2176
BshVI	ATCGAT	1 cut(s)	741
BsiEI	CGRYCG	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	3 cut(s)	503, 923, 1133
BslFI	GGGAC	5 cut(s)	196, 566, 1746, 1925, 2226
BslI	CCNNNNNNNGG	3 cut(s)	175, 2326, 2329
BsmAI	GTCTC	8 cut(s)	19, 42, 1274, 1346, 1492, 1521, 1740, 2296
BsmBI	CGTCTC	3 cut(s)	19, 1346, 2296
BsmFI	GGGAC	5 cut(s)	196, 566, 1746, 1925, 2226
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	7 cut(s)	180, 401, 502, 1237, 1539, 2319, 2348
BsoBI	CYCGRG	1 cut(s)	458
Bsp119I	TTCGAA	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	326, 2112
Bsp13I	TCCGGA	1 cut(s)	1132
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
BspACI	CCGC	8 cut(s)	151, 192, 276, 527, 536, 539, 1091, 1301
BspANI	GGCC	7 cut(s)	180, 401, 502, 1237, 1539, 2319, 2348
BspCNI	CTCAG	3 cut(s)	954, 1536, 2038
BspDI	ATCGAT	1 cut(s)	741
BspEI	TCCGGA	1 cut(s)	1132
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	1468, 2178
BspPI	GGATC	2 cut(s)	810, 1034
BspT104I	TTCGAA	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	2176
BsrBI	CCGCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	2308
BsrGI	TGTACA	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	1126, 2268, 2320
BssECI	CCNNGG	4 cut(s)	1540, 1999, 2349, 2424
BssMI	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
BssNAI	GTATAC	2 cut(s)	944, 1038
BssSI	CACGAG	2 cut(s)	909, 1224
BssT1I	CCWWGG	1 cut(s)	2424
Bst1107I	GTATAC	2 cut(s)	944, 1038
Bst2BI	CACGAG	2 cut(s)	909, 1224
Bst2UI	CCWGG	3 cut(s)	1012, 2063, 2351
Bst4CI	ACNGT	3 cut(s)	2003, 2048, 2219
Bst6I	CTCTTC	4 cut(s)	24, 269, 584, 891
BstAUI	TGTACA	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	2193
BstBI	TTCGAA	1 cut(s)	437
BstC8I	GCNNGC	4 cut(s)	155, 322, 534, 1964
BstDEI	CTNAG	5 cut(s)	33, 962, 1523, 2025, 2362
BstDSI	CCRYGG	1 cut(s)	1999
BstENI	CCTNNNNNAGG	2 cut(s)	173, 2324
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	12, 2243
BstKTI	GATC	6 cut(s)	68, 741, 805, 979, 1029, 1975
BstMAI	GTCTC	8 cut(s)	19, 42, 1274, 1346, 1492, 1521, 1740, 2296
BstMBI	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
BstMCI	CGRYCG	1 cut(s)	503
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 850, 2183
BstNI	CCWGG	3 cut(s)	1012, 2063, 2351
BstNSI	RCATGY	2 cut(s)	310, 2301
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	3 cut(s)	1010, 2061, 2349
BstSFI	CTRYAG	1 cut(s)	1593
BstSLI	GKGCMC	2 cut(s)	326, 2112
BstSNI	TACGTA	1 cut(s)	2193
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	402
BstV2I	GAAGAC	1 cut(s)	1428
BstZ17I	GTATAC	2 cut(s)	944, 1038
BstZI	CGGCCG	1 cut(s)	500
Bsu15I	ATCGAT	1 cut(s)	741
BsuRI	GGCC	7 cut(s)	180, 401, 502, 1237, 1539, 2319, 2348
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	1999
BtsI	GCAGTG	1 cut(s)	1756
BtsIMutI	CAGTG	4 cut(s)	1756, 2044, 2215, 2242
Cac8I	GCNNGC	4 cut(s)	155, 322, 534, 1964
CfoI	GCGC	2 cut(s)	12, 2243
Cfr13I	GGNCC	3 cut(s)	178, 2143, 2347
ClaI	ATCGAT	1 cut(s)	741
Csp6I	GTAC	3 cut(s)	81, 1313, 2254
CviAII	CATG	9 cut(s)	140, 286, 307, 586, 1426, 1531, 1688, 2015, 2298
CviQI	GTAC	3 cut(s)	81, 1313, 2254
DdeI	CTNAG	5 cut(s)	33, 962, 1523, 2025, 2362
DpnI	GATC	6 cut(s)	67, 740, 804, 978, 1028, 1974
DpnII	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
DraIII	CACNNNGTG	1 cut(s)	321
EaeI	YGGCCR	2 cut(s)	399, 500
EagI	CGGCCG	1 cut(s)	500
Eam1104I	CTCTTC	4 cut(s)	24, 269, 584, 891
EarI	CTCTTC	4 cut(s)	24, 269, 584, 891
EciI	GGCGGA	1 cut(s)	1316
EclXI	CGGCCG	1 cut(s)	500
Eco105I	TACGTA	1 cut(s)	2193
Eco130I	CCWWGG	1 cut(s)	2424
Eco47I	GGWCC	1 cut(s)	2143
Eco52I	CGGCCG	1 cut(s)	500
Eco57I	CTGAAG	2 cut(s)	1743, 2218
Eco88I	CYCGRG	1 cut(s)	458
EcoNI	CCTNNNNNAGG	2 cut(s)	173, 2324
EcoO109I	RGGNCCY	1 cut(s)	2143
EcoRII	CCWGG	3 cut(s)	1010, 2061, 2349
EcoT14I	CCWWGG	1 cut(s)	2424
ErhI	CCWWGG	1 cut(s)	2424
Esp3I	CGTCTC	3 cut(s)	19, 1346, 2296
FaeI	CATG	9 cut(s)	143, 289, 310, 589, 1429, 1534, 1691, 2018, 2301
FaqI	GGGAC	5 cut(s)	196, 566, 1746, 1925, 2226
FatI	CATG	9 cut(s)	139, 285, 306, 585, 1425, 1530, 1687, 2014, 2297
FbaI	TGATCA	1 cut(s)	976
FblI	GTMKAC	3 cut(s)	943, 1037, 1174
Fnu4HI	GCNGC	2 cut(s)	416, 537
Fsp4HI	GCNGC	2 cut(s)	416, 537
FspBI	CTAG	2 cut(s)	419, 561
GlaI	GCGC	2 cut(s)	11, 2242
GluI	GCNGC	2 cut(s)	416, 537
GsaI	CCCAGC	2 cut(s)	345, 551
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	7 cut(s)	180, 401, 502, 1237, 1539, 2319, 2348
HapII	CCGG	3 cut(s)	503, 923, 1133
HhaI	GCGC	2 cut(s)	12, 2243
Hin1II	CATG	9 cut(s)	143, 289, 310, 589, 1429, 1534, 1691, 2018, 2301
Hin6I	GCGC	2 cut(s)	10, 2241
HinP1I	GCGC	2 cut(s)	10, 2241
HincII	GTYRAC	2 cut(s)	1175, 2077
HindII	GTYRAC	2 cut(s)	1175, 2077
HpaII	CCGG	3 cut(s)	503, 923, 1133
HphI	GGTGA	5 cut(s)	553, 773, 838, 983, 1171
Hpy166II	GTNNAC	8 cut(s)	324, 513, 944, 1038, 1175, 2059, 2077, 2222
Hpy188III	TCNNGA	8 cut(s)	1133, 1411, 1418, 1505, 1763, 1829, 1970, 2342
Hpy8I	GTNNAC	8 cut(s)	324, 513, 944, 1038, 1175, 2059, 2077, 2222
HpyAV	CCTTC	9 cut(s)	670, 766, 793, 802, 1324, 1701, 2023, 2155, 2203
HpyCH4III	ACNGT	3 cut(s)	2003, 2048, 2219
HpyCH4IV	ACGT	5 cut(s)	734, 1355, 2087, 2192, 2289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 850, 2183
HpyF3I	CTNAG	5 cut(s)	33, 962, 1523, 2025, 2362
HpySE526I	ACGT	5 cut(s)	734, 1355, 2087, 2192, 2289
Hsp92II	CATG	9 cut(s)	143, 289, 310, 589, 1429, 1534, 1691, 2018, 2301
HspAI	GCGC	2 cut(s)	10, 2241
Kpn2I	TCCGGA	1 cut(s)	1132
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
LmnI	GCTCC	3 cut(s)	162, 283, 315
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	7 cut(s)	327, 658, 1254, 1603, 1869, 1975, 2398
MaeI	CTAG	2 cut(s)	419, 561
MaeII	ACGT	5 cut(s)	734, 1355, 2087, 2192, 2289
MaeIII	GTNAC	3 cut(s)	721, 826, 1950
MalI	GATC	6 cut(s)	67, 740, 804, 978, 1028, 1974
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
MhlI	GDGCHC	2 cut(s)	326, 2112
MlsI	TGGCCA	1 cut(s)	401
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	5 cut(s)	80, 338, 491, 613, 1686
MmeI	TCCRAC	7 cut(s)	114, 127, 273, 327, 747, 873, 1682
Mox20I	TGGCCA	1 cut(s)	401
MroI	TCCGGA	1 cut(s)	1132
MroXI	GAANNNNTTC	3 cut(s)	443, 614, 680
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	7 cut(s)	846, 1262, 1371, 1443, 1892, 1941, 2099
MslI	CAYNNNNRTG	1 cut(s)	2004
Msp20I	TGGCCA	1 cut(s)	401
MspI	CCGG	3 cut(s)	503, 923, 1133
MspR9I	CCNGG	3 cut(s)	1012, 2063, 2351
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	3 cut(s)	1012, 2063, 2351
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	533, 850, 2183
NdeII	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
NlaIII	CATG	9 cut(s)	143, 289, 310, 589, 1429, 1534, 1691, 2018, 2301
NlaIV	GGNNCC	2 cut(s)	1468, 2178
NmeAIII	GCCGAG	1 cut(s)	1565
NmuCI	GTSAC	1 cut(s)	826
NspI	RCATGY	2 cut(s)	310, 2301
NspV	TTCGAA	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	458
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	3 cut(s)	443, 614, 680
PfeI	GAWTC	5 cut(s)	99, 162, 1414, 1852, 1977
PflFI	GACNNNGTC	1 cut(s)	2147
PkrI	GCNGC	2 cut(s)	417, 538
PleI	GAGTC	5 cut(s)	80, 337, 490, 612, 1686
PpsI	GAGTC	5 cut(s)	80, 337, 490, 612, 1686
Ppu21I	YACGTR	1 cut(s)	2193
PpuMI	RGGWCCY	1 cut(s)	2143
PshAI	GACNNNNGTC	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	1371
PsiI	TTATAA	3 cut(s)	624, 834, 1475
Psp5II	RGGWCCY	1 cut(s)	2143
Psp6I	CCWGG	3 cut(s)	1010, 2061, 2349
PspFI	CCCAGC	2 cut(s)	341, 547
PspGI	CCWGG	3 cut(s)	1010, 2061, 2349
PspN4I	GGNNCC	2 cut(s)	1468, 2178
PspPI	GGNCC	3 cut(s)	178, 2143, 2347
PspPPI	RGGWCCY	1 cut(s)	2143
PspXI	VCTCGAGB	1 cut(s)	458
PsyI	GACNNNGTC	1 cut(s)	2147
RsaI	GTAC	3 cut(s)	82, 1314, 2255
RsaNI	GTAC	3 cut(s)	81, 1313, 2254
RseI	CAYNNNNRTG	1 cut(s)	2004
SalI	GTCGAC	1 cut(s)	1173
SaqAI	TTAA	7 cut(s)	846, 1262, 1371, 1443, 1892, 1941, 2099
SatI	GCNGC	2 cut(s)	416, 537
Sau3AI	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
Sau96I	GGNCC	3 cut(s)	178, 2143, 2347
SchI	GAGTC	5 cut(s)	80, 338, 491, 613, 1686
ScrFI	CCNGG	3 cut(s)	1012, 2063, 2351
SduI	GDGCHC	2 cut(s)	326, 2112
SfaNI	GCATC	7 cut(s)	327, 658, 1254, 1603, 1869, 1975, 2398
SfcI	CTRYAG	1 cut(s)	1593
Sfr274I	CTCGAG	1 cut(s)	458
SfuI	TTCGAA	1 cut(s)	437
SinI	GGWCC	1 cut(s)	2143
SlaI	CTCGAG	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	2004
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SnaBI	TACGTA	1 cut(s)	2193
SsiI	CCGC	8 cut(s)	151, 192, 276, 527, 536, 539, 1091, 1301
SspMI	CTAG	2 cut(s)	419, 561
StyD4I	CCNGG	3 cut(s)	1010, 2061, 2349
StyI	CCWWGG	1 cut(s)	2424
TaaI	ACNGT	3 cut(s)	2003, 2048, 2219
TaiI	ACGT	5 cut(s)	737, 1358, 2090, 2195, 2292
TaqI	TCGA	8 cut(s)	437, 459, 480, 684, 741, 951, 1174, 1975
TatI	WGTACW	1 cut(s)	80
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	5 cut(s)	99, 162, 1414, 1852, 1977
Tru1I	TTAA	7 cut(s)	846, 1262, 1371, 1443, 1892, 1941, 2099
Tru9I	TTAA	7 cut(s)	846, 1262, 1371, 1443, 1892, 1941, 2099
TscAI	CASTG	4 cut(s)	1756, 2051, 2222, 2242
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	826
TspGWI	ACGGA	2 cut(s)	341, 377
TspRI	CASTG	4 cut(s)	1756, 2051, 2222, 2242
Tth111I	GACNNNGTC	1 cut(s)	2147
VneI	GTGCAC	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	2143
VspI	ATTAAT	1 cut(s)	1371
XagI	CCTNNNNNAGG	2 cut(s)	173, 2324
XapI	RAATTY	2 cut(s)	1271, 1345
XceI	RCATGY	2 cut(s)	310, 2301
XhoI	CTCGAG	1 cut(s)	458
XmiI	GTMKAC	3 cut(s)	943, 1037, 1174
XmnI	GAANNNNTTC	3 cut(s)	443, 614, 680
XspI	CTAG	2 cut(s)	419, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.