Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010490

Physical Location & Seq

Genomic Coordinates Forward (+)

11633398 .. 11638338

Gene Structure 4941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17750.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGGCAAGGCGCGTCTCTCTTCTTCTTCGTCTTCCAAAGTCTCTGCCCACCAAAACCCAAAACCTCCGATCACTTTCTGTCTGTACAGTCTCCGACCAAGACCAACAACACCGCCATGAGCAAGTCCGCAAGCTCCGAATCCTCCTCCAACAGGGCCGAACCGACGCCGCAGCTCGCTTCATCAAGTCCCTCATCCTCCCCACCTCCCCTTTCTCCTCCCCCTCCGACCTCTACGACCTCTTCTCCCTCTCCGCCCCCTCCATCACCCCCGCATTCTCCGACATGCTCCTTACGGCCTGCACGGACTCCAAGATGCCCAAACAAGCCGTGGAGCTCTACGCTTTGATGCGAAAGAGCGACCTCCGCCCGAGCTTGGCCACGCTCAACCAGCTGCTCGAGTGCCTGGTGGGGTCCAAGATGTTCGAGGAGACACTCGAATTGTTTTCGCAGATTTTCGAGTCTGGGAAGGGCATTAAACCGGATAAGTTCACTTACGGGAAGGCCGTGCAGGCCGCGGTGAAGCTCGGGGACTTAAAGAGGGCCGGAGAGATTGTGGAATCCATGAAAACAATGAGGCTGGTGCCGAATGTGTTTATTTTTAATGTTTTGATAGGGGGACTGTGTAAAGAGAGGAGGATGAGGGATGCAGAGAAGGTGTTTGATGAAATGCTTGAGAGAAAGGGAGTGCCGACTTTGGTTACTTATAATACGCTGATCGATGGGTACTGTAAGGTGGGTGAGGTGGAGAAGGCGTTTGAGGTGAGGGAGAGGATGAAGGATCAGAAGGTGGAAGCGAATGTGGTGACTTATAATACATTGCTGAATGGGCTTTGTAGGGGGAAGAGAATGGAGGATGCGAAGAGGGTGTTGGAGGAGATGGAGGCTCATGGGTTTGCGCCGGATGGTTTTACTTATAGTATACTTTTCGATGGGCATTTGAGGTGTGGTGATGATCAGGGGGTGTTGGCTTTGTTTGATGAGATAGCCAGGAAAGGTGTGAGGATCAATGGCTATACTTGCAGTATTTTGTTGAACGGGTTGTGCAAGAAAGGGAAGGTTGAGGAAGCGGAGGAGGTTTTGAAGAAATTGTTGGATACTGGTTTTGTTCCAGATGAAGTAGTGTATAACACTCTGGTGAGTGGATATTGTCGACAATCTGACATTGACAGAGCCGTTTTGGTTATTGAGAAAATGGAAGCTCGTGGTTTGAGGCCAAACTGCATCACTTTCAGTCTTTTAATTCACAAATTCTGTGAGACAAAGGATATGGATAAGGCAGAGGAATGGGTACAGAAGATGCTAAAGAAGGGAGTTTCGCCGAATTTGGAGGTGTATAACACCCTTATTAACGGCTACGGGCGGATTTGCACATTTGATAAGTGTTTCGAGATTCTTGAAGACATGGAAAGTAAGGCAATCAAACCAAATGTTGTGAGCTATGGTTCCCTTATAAATTGTTTGTGCAAGGATGGGAGACTTCTTGAAGCTGAACTGCAGCTCAGAGACATGGTAGGCCGAGGTGTTTTGCCAAATGCACAGATATATAATATGCTCATTGATGGTAGCTCTACACAGGGGAAGCTGAAAGATGCTTTCAGATTTTTTGATGAGATGGCGAAAAATGGGATAAGTCCAACACTTGTAACCTACAATGCACTCATACATGGACTCTGCAAAAAAGGACGGATGATTGAAGCTGAAGACTATGTGTCTCAAATTACAAGCAGTGGTTATAGACCCGATGTGATCACATACAACTCCTTAATTTCAGGTTATTCTGATACAGTAAATACCCAGAAATGTCTGGAATTATATGAAGCTATGAAGAATCTGGGCATCACACCTACTTTATATACATATCATCCTCTAATTAGCGGATGCAGCAGGGACAATATGGTATTAGCAGAAAAGTTGTTGAATGAGATGTTACAAATGGGCTTGCGTCCTGATCGGATTATTTATAATGCACTCATTCACGGTTACGCAGAGCATGGTGATATTCAGAAGGCACTTTCTTTGCGCAGTGAGATGGTAGACCAGAAAATCAATGTTGACAAGATGACATATAATAGCTTGATTCTTGGGCACTTCAAACAAGGAAAGGTGTCAGAGGTAAAGGACCTCGTCGATGATATGAAGGCTAAAGGATTGACACCCAAAGCTGATACGTATAACTTACTTGTGAAGGGACACTGTGAACTGAAGGACTTCAGTGGCGCATATTTTTGGTACAGGGAACTGGTTGAGAATGGTTATCTTCTAAACGTCTCCACTTGCAATGAGCTTACAACTGGCCTTCAAAAGGAGGGGAGGTTTCAAGAGGCCCAGATTATCTGCTTAGAAATGAGTGCTAAAGGTATAGATGACCTTAGCTCCAATGAAGAGGCAATTTCTGTTACCAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

803

Amino Acids

90.22

Weight (kDa)

6.85

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	95 - 223	1e-05	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	156 - 205	3.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	193 - 223	1.4e-10	PPR repeat
PPR_2	PF13041	195 - 235	7.4e-11	PPR repeat family
PPR	PF01535	199 - 226	5e-07	PPR repeat
TPR_24	PF23276	217 - 327	9.9e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	219 - 275	1.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	229 - 259	6.4e-13	PPR repeat
PPR_2	PF13041	230 - 279	1e-19	PPR repeat family
PPR	PF01535	233 - 261	2.5e-09	PPR repeat
PPR_3	PF13812	256 - 308	4.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	263 - 294	1.6e-11	PPR repeat
PPR_2	PF13041	266 - 312	5.3e-17	PPR repeat family
PPR	PF01535	268 - 298	9.9e-08	PPR repeat
PPR_2	PF13041	310 - 349	3.9e-06	PPR repeat family
PPR_long	PF17177	315 - 448	1.1e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	324 - 382	8.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	331 - 362	1.6e-06	PPR repeat
PPR	PF01535	338 - 367	1e-05	PPR repeat
TPR_24	PF23276	340 - 451	8.3e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	341 - 378	2.6e-07	PPR repeat family
PPR_3	PF13812	363 - 416	2.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	367 - 399	5.6e-10	PPR repeat
PPR_2	PF13041	370 - 418	1.4e-13	PPR repeat family
PPR	PF01535	373 - 403	6.5e-06	PPR repeat
PPR_3	PF13812	394 - 453	5.6e-12	Pentatricopeptide repeat domain
PPR_long	PF17177	431 - 527	8.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	440 - 489	2e-13	PPR repeat family
PPR_1	PF12854	473 - 503	1.1e-08	PPR repeat
PPR_2	PF13041	475 - 521	2.8e-09	PPR repeat family
PPR_3	PF13812	500 - 555	2.2e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	506 - 538	5.3e-08	PPR repeat
PPR_long	PF17177	508 - 623	6.3e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	510 - 559	1.4e-16	PPR repeat family
TPR_24	PF23276	515 - 607	9.5e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	541 - 568	1.7e-09	PPR repeat
PPR_2	PF13041	545 - 593	4.8e-13	PPR repeat family
PPR	PF01535	548 - 577	2.1e-06	PPR repeat
PPR_3	PF13812	575 - 627	8e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	580 - 629	2.7e-12	PPR repeat family
TPR_24	PF23276	631 - 746	6.6e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	645 - 678	4.2e-07	PPR repeat
PPR_2	PF13041	649 - 693	5.3e-11	PPR repeat family
PPR	PF01535	653 - 680	4.2e-06	PPR repeat
PPR_3	PF13812	673 - 729	1.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	686 - 732	1.1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12100
fragaria_vesca	FvH4_6g17750 FvH4_6g17750 FvH4_6g17750 FvH4_6g17750
malus_domestica	MD12G1016300.v1.1 MD14G1014400.v1.1
prunus_persica	Prupe.7G119000_v2.0.a1
pyrus_communis	pycom12g01340 pycom14g01210
rosa_chinensis	RchiOBHm_Chr3g0471971
rosa_laevigata	RLG00000024115
rosa_multiflora	Rmu_sc0000090.1_g000022
rosa_roxburghii	Rroxscaffold_6G00409400
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172800 Rh3BG198300 Rh3CG189400 Rh3CG196800 Rh3DG176100
rosa_wichuraiana	Rw3G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	705, 810, 1451, 1962
Acc16I	TGCGCA	1 cut(s)	2021
AccB1I	GGYRCC	1 cut(s)	580
AccI	GTMKAC	3 cut(s)	919, 1150, 2034
AccII	CGCG	2 cut(s)	12, 515
AclWI	GGATC	2 cut(s)	786, 1010
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	1247, 1321
AcuI	CTGAAG	3 cut(s)	1719, 2194, 2222
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	4 cut(s)	85, 725, 1290, 2231
AfiI	CCNNNNNNNGG	3 cut(s)	151, 373, 2302
AgsI	TTSAA	9 cut(s)	1033, 1081, 1397, 1484, 1694, 1918, 2092, 2300, 2318
AhdI	GACNNNNNGTC	1 cut(s)	1708
AjnI	CCWGG	2 cut(s)	402, 986
AjuI	GAANNNNNNNTTGG	4 cut(s)	851, 883, 1073, 1105
AleI	CACNNNNGTG	1 cut(s)	1133
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	9 cut(s)	19, 45, 94, 422, 1250, 1468, 1497, 1716, 2272
AlwI	GGATC	2 cut(s)	786, 1010
Ama87I	CYCGRG	3 cut(s)	367, 395, 524
ApeKI	GCWGC	4 cut(s)	170, 391, 1495, 1881
ApoI	RAATTY	2 cut(s)	1247, 1321
Asp700I	GAANNNNTTC	1 cut(s)	2207
AspLEI	GCGC	4 cut(s)	12, 898, 2022, 2219
AspS9I	GGNCC	5 cut(s)	154, 411, 540, 2119, 2323
AsuHPI	GGTGA	8 cut(s)	256, 529, 749, 772, 814, 959, 1147, 2006
AvaI	CYCGRG	3 cut(s)	367, 395, 524
AvaII	GGWCC	2 cut(s)	411, 2119
BaeGI	GKGCMC	1 cut(s)	2088
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	1200
BbsI	GAAGAC	3 cut(s)	23, 1404, 1707
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	4 cut(s)	182, 378, 1507, 1893
BccI	CCATC	9 cut(s)	269, 713, 871, 896, 923, 1463, 1553, 1606, 2023
BceAI	ACGGC	5 cut(s)	309, 311, 488, 1157, 1366
BciT130I	CCWGG	2 cut(s)	404, 988
BciVI	GTATCC	1 cut(s)	1087
BclI	TGATCA	2 cut(s)	952, 1746
BcoDI	GTCTC	9 cut(s)	19, 45, 94, 422, 1250, 1468, 1497, 1716, 2272
BfmI	CTRYAG	1 cut(s)	1493
BfuI	GTATCC	1 cut(s)	1087
BglI	GCCNNNNNGGC	1 cut(s)	509
BisI	GCNGC	6 cut(s)	168, 171, 392, 513, 1496, 1882
BlsI	GCNGC	6 cut(s)	169, 172, 393, 514, 1497, 1883
Bme1390I	CCNGG	2 cut(s)	404, 988
Bme18I	GGWCC	2 cut(s)	411, 2119
BmeRI	GACNNNNNGTC	1 cut(s)	1708
BmeT110I	CYCGRG	3 cut(s)	367, 395, 524
BmgT120I	GGNCC	5 cut(s)	154, 411, 540, 2119, 2323
BmiI	GGNNCC	3 cut(s)	412, 582, 1444
BmrFI	CCNGG	2 cut(s)	404, 988
BmsI	GCATC	9 cut(s)	303, 336, 634, 844, 1230, 1287, 1579, 1845, 1868
BpiI	GAAGAC	3 cut(s)	23, 1404, 1707
Bpu10I	CCTNAGC	1 cut(s)	2369
BpuEI	CTTGAG	1 cut(s)	692
Bsa29I	ATCGAT	1 cut(s)	717
BsaAI	YACGTR	1 cut(s)	2169
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	327, 513, 1516, 2400
BsaWI	WCCGGW	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 373, 2302
Bse1I	ACTGG	3 cut(s)	1102, 2244, 2296
Bse3DI	GCAATG	2 cut(s)	815, 2284
BseBI	CCWGG	2 cut(s)	404, 988
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	4 cut(s)	327, 513, 1516, 2400
BseLI	CCNNNNNNNGG	3 cut(s)	151, 373, 2302
BseMI	GCAATG	2 cut(s)	815, 2284
BseMII	CTCAG	1 cut(s)	1513
BseNI	ACTGG	3 cut(s)	1102, 2244, 2296
BseRI	GAGGAG	6 cut(s)	134, 205, 440, 646, 887, 1085
BseSI	GKGCMC	1 cut(s)	2088
BseXI	GCAGC	4 cut(s)	182, 378, 1507, 1893
BsgI	GTGCAG	2 cut(s)	283, 527
Bsh1236I	CGCG	2 cut(s)	12, 515
BshNI	GGYRCC	1 cut(s)	580
BshVI	ATCGAT	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	336
BsiHKCI	CYCGRG	3 cut(s)	367, 395, 524
BsiSI	CCGG	3 cut(s)	479, 543, 899
BslFI	GGGAC	5 cut(s)	172, 542, 630, 1901, 2202
BslI	CCNNNNNNNGG	3 cut(s)	151, 373, 2302
BsmAI	GTCTC	9 cut(s)	19, 45, 94, 422, 1250, 1468, 1497, 1716, 2272
BsmBI	CGTCTC	2 cut(s)	19, 2272
BsmFI	GGGAC	5 cut(s)	172, 542, 630, 1901, 2202
BsmI	GAATGC	1 cut(s)	272
BsoBI	CYCGRG	3 cut(s)	367, 395, 524
Bsp1286I	GDGCHC	2 cut(s)	336, 2088
Bsp1407I	TGTACA	1 cut(s)	83
Bsp143I	GATC	7 cut(s)	68, 714, 778, 952, 1002, 1746, 1948
BspCNI	CTCAG	1 cut(s)	1512
BspDI	ATCGAT	1 cut(s)	717
BspFNI	CGCG	2 cut(s)	12, 515
BspLI	GGNNCC	3 cut(s)	412, 582, 1444
BspMAI	CTGCAG	1 cut(s)	1497
BspPI	GGATC	2 cut(s)	786, 1010
BspT107I	GGYRCC	1 cut(s)	580
BsrDI	GCAATG	2 cut(s)	815, 2284
BsrGI	TGTACA	1 cut(s)	83
BsrI	ACTGG	3 cut(s)	1102, 2244, 2296
BssECI	CCNNGG	4 cut(s)	327, 513, 1516, 2400
BssMI	GATC	7 cut(s)	68, 714, 778, 952, 1002, 1746, 1948
BssNAI	GTATAC	1 cut(s)	920
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	1200
BssT1I	CCWWGG	1 cut(s)	2400
Bst1107I	GTATAC	1 cut(s)	920
Bst2BI	CACGAG	1 cut(s)	1200
Bst2UI	CCWGG	2 cut(s)	404, 988
Bst4CI	ACNGT	6 cut(s)	88, 621, 728, 1786, 1979, 2195
Bst6I	CTCTTC	5 cut(s)	24, 245, 836, 854, 2376
BstACI	GRCGYC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	2169
BstC8I	GCNNGC	5 cut(s)	131, 175, 298, 510, 1940
BstDEI	CTNAG	3 cut(s)	1499, 2338, 2369
BstDSI	CCRYGG	2 cut(s)	327, 513
BstENI	CCTNNNNNAGG	2 cut(s)	149, 2300
BstFNI	CGCG	2 cut(s)	12, 515
BstHHI	GCGC	4 cut(s)	12, 898, 2022, 2219
BstKTI	GATC	7 cut(s)	71, 717, 781, 955, 1005, 1749, 1951
BstMAI	GTCTC	9 cut(s)	19, 45, 94, 422, 1250, 1468, 1497, 1716, 2272
BstMBI	GATC	7 cut(s)	68, 714, 778, 952, 1002, 1746, 1948
BstMWI	GCNNNNNNNGC	6 cut(s)	363, 388, 509, 826, 1017, 1881
BstNI	CCWGG	2 cut(s)	404, 988
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	402, 986
BstSFI	CTRYAG	1 cut(s)	1493
BstSLI	GKGCMC	1 cut(s)	2088
BstSNI	TACGTA	1 cut(s)	2169
BstUI	CGCG	2 cut(s)	12, 515
BstV1I	GCAGC	4 cut(s)	182, 378, 1507, 1893
BstV2I	GAAGAC	3 cut(s)	23, 1404, 1707
BstZ17I	GTATAC	1 cut(s)	920
Bsu15I	ATCGAT	1 cut(s)	717
BsuI	GTATCC	1 cut(s)	1087
BsuTUI	ATCGAT	1 cut(s)	717
BtgI	CCRYGG	2 cut(s)	327, 513
BtsI	GCAGTG	2 cut(s)	1732, 2029
BtsIMutI	CAGTG	4 cut(s)	1732, 2029, 2191, 2218
Cac8I	GCNNGC	5 cut(s)	131, 175, 298, 510, 1940
CfoI	GCGC	4 cut(s)	12, 898, 2022, 2219
Cfr13I	GGNCC	5 cut(s)	154, 411, 540, 2119, 2323
Cfr42I	CCGCGG	1 cut(s)	516
ClaI	ATCGAT	1 cut(s)	717
CseI	GACGC	2 cut(s)	173, 1931
Csp6I	GTAC	4 cut(s)	84, 724, 1289, 2230
CviAII	CATG	8 cut(s)	116, 283, 562, 887, 1402, 1507, 1664, 1991
CviQI	GTAC	4 cut(s)	84, 724, 1289, 2230
DdeI	CTNAG	3 cut(s)	1499, 2338, 2369
DpnI	GATC	7 cut(s)	70, 716, 780, 954, 1004, 1748, 1950
DpnII	GATC	7 cut(s)	68, 714, 778, 952, 1002, 1746, 1948
DriI	GACNNNNNGTC	1 cut(s)	1708
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	5 cut(s)	24, 245, 836, 854, 2376
Eam1105I	GACNNNNNGTC	1 cut(s)	1708
EarI	CTCTTC	5 cut(s)	24, 245, 836, 854, 2376
EciI	GGCGGA	3 cut(s)	241, 353, 1375
Ecl136II	GAGCTC	1 cut(s)	334
Eco105I	TACGTA	1 cut(s)	2169
Eco130I	CCWWGG	1 cut(s)	2400
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	2 cut(s)	411, 2119
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	3 cut(s)	1719, 2194, 2222
Eco88I	CYCGRG	3 cut(s)	367, 395, 524
EcoICRI	GAGCTC	1 cut(s)	334
EcoNI	CCTNNNNNAGG	2 cut(s)	149, 2300
EcoO109I	RGGNCCY	1 cut(s)	2119
EcoRII	CCWGG	2 cut(s)	402, 986
EcoT14I	CCWWGG	1 cut(s)	2400
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	2400
Esp3I	CGTCTC	2 cut(s)	19, 2272
FaeI	CATG	8 cut(s)	119, 286, 565, 890, 1405, 1510, 1667, 1994
FaqI	GGGAC	5 cut(s)	172, 542, 630, 1901, 2202
FatI	CATG	8 cut(s)	115, 282, 561, 886, 1401, 1506, 1663, 1990
FauI	CCCGC	1 cut(s)	277
FbaI	TGATCA	2 cut(s)	952, 1746
FblI	GTMKAC	3 cut(s)	919, 1150, 2034
Fnu4HI	GCNGC	6 cut(s)	168, 171, 392, 513, 1496, 1882
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	6 cut(s)	168, 171, 392, 513, 1496, 1882
FspI	TGCGCA	1 cut(s)	2021
GlaI	GCGC	4 cut(s)	11, 897, 2021, 2218
GluI	GCNGC	6 cut(s)	168, 171, 392, 513, 1496, 1882
HapII	CCGG	3 cut(s)	479, 543, 899
HgaI	GACGC	2 cut(s)	173, 1931
HhaI	GCGC	4 cut(s)	12, 898, 2022, 2219
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	8 cut(s)	119, 286, 565, 890, 1405, 1510, 1667, 1994
Hin6I	GCGC	4 cut(s)	10, 896, 2020, 2217
HinP1I	GCGC	4 cut(s)	10, 896, 2020, 2217
HincII	GTYRAC	2 cut(s)	1151, 2053
HindII	GTYRAC	2 cut(s)	1151, 2053
HinfI	GANTC	8 cut(s)	138, 305, 458, 557, 1390, 1668, 1828, 2077
HpaII	CCGG	3 cut(s)	479, 543, 899
HphI	GGTGA	8 cut(s)	256, 529, 749, 772, 814, 959, 1147, 2006
Hpy166II	GTNNAC	6 cut(s)	489, 920, 1151, 2035, 2053, 2198
Hpy188III	TCNNGA	7 cut(s)	1109, 1387, 1394, 1481, 1805, 1946, 2318
Hpy8I	GTNNAC	6 cut(s)	489, 920, 1151, 2035, 2053, 2198
Hpy99I	CGWCG	2 cut(s)	167, 2129
HpyCH4III	ACNGT	6 cut(s)	88, 621, 728, 1786, 1979, 2195
HpyCH4IV	ACGT	2 cut(s)	2168, 2265
HpyF10VI	GCNNNNNNNGC	6 cut(s)	363, 388, 509, 826, 1017, 1881
HpyF3I	CTNAG	3 cut(s)	1499, 2338, 2369
HpySE526I	ACGT	2 cut(s)	2168, 2265
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	8 cut(s)	119, 286, 565, 890, 1405, 1510, 1667, 1994
HspAI	GCGC	4 cut(s)	10, 896, 2020, 2217
Ksp22I	TGATCA	2 cut(s)	952, 1746
KspI	CCGCGG	1 cut(s)	516
Kzo9I	GATC	7 cut(s)	68, 714, 778, 952, 1002, 1746, 1948
LmnI	GCTCC	4 cut(s)	138, 291, 331, 2378
Lsp1109I	GCAGC	4 cut(s)	182, 378, 1507, 1893
LweI	GCATC	9 cut(s)	303, 336, 634, 844, 1230, 1287, 1579, 1845, 1868
MaeII	ACGT	2 cut(s)	2168, 2265
MaeIII	GTNAC	6 cut(s)	697, 802, 1642, 1926, 1979, 2395
MalI	GATC	7 cut(s)	70, 716, 780, 954, 1004, 1748, 1950
MboI	GATC	7 cut(s)	68, 714, 778, 952, 1002, 1746, 1948
MhlI	GDGCHC	2 cut(s)	336, 2088
MlsI	TGGCCA	1 cut(s)	377
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	3 cut(s)	299, 467, 1662
MmeI	TCCRAC	7 cut(s)	117, 172, 249, 303, 849, 1071, 1658
Mox20I	TGGCCA	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	2207
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	6 cut(s)	474, 533, 600, 1238, 1347, 1763
MslI	CAYNNNNRTG	2 cut(s)	114, 1133
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	2 cut(s)	391, 515
MspI	CCGG	3 cut(s)	479, 543, 899
MspR9I	CCNGG	2 cut(s)	404, 988
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	404, 988
MvnI	CGCG	2 cut(s)	12, 515
MwoI	GCNNNNNNNGC	6 cut(s)	363, 388, 509, 826, 1017, 1881
NdeII	GATC	7 cut(s)	68, 714, 778, 952, 1002, 1746, 1948
NlaIII	CATG	8 cut(s)	119, 286, 565, 890, 1405, 1510, 1667, 1994
NlaIV	GGNNCC	3 cut(s)	412, 582, 1444
NmeAIII	GCCGAG	1 cut(s)	1541
NmuCI	GTSAC	1 cut(s)	802
NsbI	TGCGCA	1 cut(s)	2021
NspI	RCATGY	1 cut(s)	286
OliI	CACNNNNGTG	1 cut(s)	1133
PaeR7I	CTCGAG	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	2207
PfeI	GAWTC	5 cut(s)	138, 557, 1390, 1828, 2077
PflFI	GACNNNGTC	1 cut(s)	2123
PkrI	GCNGC	6 cut(s)	169, 172, 393, 514, 1497, 1883
PleI	GAGTC	3 cut(s)	299, 466, 1662
PpsI	GAGTC	3 cut(s)	299, 466, 1662
Ppu21I	YACGTR	1 cut(s)	2169
PpuMI	RGGWCCY	1 cut(s)	2119
PsiI	TTATAA	4 cut(s)	705, 810, 1451, 1962
Psp124BI	GAGCTC	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	2119
Psp6I	CCWGG	2 cut(s)	402, 986
PspGI	CCWGG	2 cut(s)	402, 986
PspN4I	GGNNCC	3 cut(s)	412, 582, 1444
PspPI	GGNCC	5 cut(s)	154, 411, 540, 2119, 2323
PspPPI	RGGWCCY	1 cut(s)	2119
PspXI	VCTCGAGB	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	1497
PsyI	GACNNNGTC	1 cut(s)	2123
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	4 cut(s)	85, 725, 1290, 2231
RsaNI	GTAC	4 cut(s)	84, 724, 1289, 2230
RseI	CAYNNNNRTG	2 cut(s)	114, 1133
SacI	GAGCTC	1 cut(s)	336
SacII	CCGCGG	1 cut(s)	516
SalI	GTCGAC	1 cut(s)	1149
SaqAI	TTAA	6 cut(s)	474, 533, 600, 1238, 1347, 1763
SatI	GCNGC	6 cut(s)	168, 171, 392, 513, 1496, 1882
Sau3AI	GATC	7 cut(s)	68, 714, 778, 952, 1002, 1746, 1948
Sau96I	GGNCC	5 cut(s)	154, 411, 540, 2119, 2323
SchI	GAGTC	3 cut(s)	299, 467, 1662
ScrFI	CCNGG	2 cut(s)	404, 988
SduI	GDGCHC	2 cut(s)	336, 2088
SfaNI	GCATC	9 cut(s)	303, 336, 634, 844, 1230, 1287, 1579, 1845, 1868
SfcI	CTRYAG	1 cut(s)	1493
SfiI	GGCCNNNNNGGCC	1 cut(s)	509
Sfr274I	CTCGAG	1 cut(s)	395
Sfr303I	CCGCGG	1 cut(s)	516
SgrBI	CCGCGG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	411, 2119
SlaI	CTCGAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	114, 1133
SmlI	CTYRAG	2 cut(s)	395, 671
SmoI	CTYRAG	2 cut(s)	395, 671
SnaBI	TACGTA	1 cut(s)	2169
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	402, 986
StyI	CCWWGG	1 cut(s)	2400
TaaI	ACNGT	6 cut(s)	88, 621, 728, 1786, 1979, 2195
TaiI	ACGT	2 cut(s)	2171, 2268
TaqI	TCGA	9 cut(s)	396, 423, 435, 456, 717, 927, 1150, 1386, 2127
TatI	WGTACW	1 cut(s)	83
TauI	GCSGC	2 cut(s)	170, 515
TfiI	GAWTC	5 cut(s)	138, 557, 1390, 1828, 2077
Tru1I	TTAA	6 cut(s)	474, 533, 600, 1238, 1347, 1763
Tru9I	TTAA	6 cut(s)	474, 533, 600, 1238, 1347, 1763
TscAI	CASTG	4 cut(s)	1732, 2029, 2198, 2218
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	4 cut(s)	170, 391, 1495, 1881
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	9 cut(s)	169, 578, 678, 788, 1128, 1830, 1838, 2150, 2394
TspGWI	ACGGA	2 cut(s)	317, 1699
TspRI	CASTG	4 cut(s)	1732, 2029, 2198, 2218
Tth111I	GACNNNGTC	1 cut(s)	2123
VpaK11BI	GGWCC	2 cut(s)	411, 2119
XagI	CCTNNNNNAGG	2 cut(s)	149, 2300
XapI	RAATTY	2 cut(s)	1247, 1321
XceI	RCATGY	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	395
XmiI	GTMKAC	3 cut(s)	919, 1150, 2034
XmnI	GAANNNNTTC	1 cut(s)	2207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.