Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010490

Physical Location & Seq

Genomic Coordinates Forward (+)

16034572 .. 16037718

Gene Structure 3147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG172800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGGCAAGGCGCGTCTCTCTTCTTCTTCTTCCTAAGTCTCTACCCACCAAAACCCAAAACCTCCGATCAGTTTCTCTCTGTACAGACTCCGACCCAAGAATCCAACCCTCCAATTCAAACCACCAAGACCAGCAACGCCATGAACAAGTCCGCAAGCTCCGAATCCTCCTCCAGCAGGGCCGAACCGACACCGCAAATCGCTTCATCAAGTCCCTCATTCTCCCCACCTCGCCTTTCTCCTCCCCCTCCGACCTTTACAACCTCTTCTCCCTCTCCGCTCCCTCCATGACACCCACATTCTCCGACATGCTCCTCACGGCGTGCACGGAGTCCAAGATGCCCAGCGAAGCAGTTGAGTTGTATGGTCTGATGAGAAAGAGCGACCTCCGTCCGAGTTTGGCCACTCTCAATATGCTGCTAGAGTGCTTGGTGGCTTCGAAAATGTTCAGAAAAACCCTTGAGTTGTTTTCGCAGATTTTCGAGTCTGGTAAGGGCATTCGGCCGGATAAGTTCACTTACGGCAAGGCGGTGCAGGCGGCGGTGAAGCTGGGGGACTTGACTAGGGCTGTTGAGCTTGTGGAGTGCATGAAGAGAGAGAGGTTGAGTCCGAATGTGTTCATTTATAATGTTTTGATTAGTGGGTTGTGTAAAGAGAAGAAAATGAGGGATGCAGAGAAGGTGTTCGATGAAATGCGTGAGAGGAGGGGAGTGCCGACTTTGGTTACTTACAACACGTTGATCGATGGGTATTGTAAGGTGGGTGAGTTGGAGAAGGGGTTTGGGTTGAGAGAGAGGATGAAGGATCAGAAGGTGGAAGCGAATGTGGTGACTTATAATACAATGCTTAATGGGCTTTGTAAGGCAAAGAGAATGGAGGAAGCGAAAGGGGTGTTGGAAGAGATGGAGGCTCATGGATTTGTGCCGGATGGTTTTACTTATAGTATACTTTTCGATGGACATCTGAGGTGTGGTGATGATCAGGGTGTGTTGGCTTTGTTTGAAGAAGCAACCAGGAAAGGTGTGAGGATCAATGGGTATACTTGTAGTATTTTGTTGAATGGGTTGTGCAAGAAAGGAAAGATAGAGAAAGCGGAGGAGATTTTGAAGAAATTGATGGAAACTGGTTTTGTTCCGGATGAAGTAGTGTATAATACTCTGGTGAGTGGATATTGTCGACAATCTGACATTGACAGAGCCATTTTGGTCATTGAGAAAATGGAAGCTCGTGGGTTGAGGCCAAATTGCATCACTTTCAATTCTTTGATTCACAAATTCTGTGAGACAAAGGATATGGATAGGGCGGAGGAATGGGTACAGAAGATGGTAAAGAAGGGAGTTTCGCCGAATTTGGAGACGTATAACACCCTTATTAATGGCTACGGGCAGATTTGCACATTTGATAAGTGTTTCCAGATTCTTGAAGACATGGAAAGTAAGGCAATTAAACCAAATGTTGTGAGCTATGGTTCCCTTATAAATTGTTTATGCAAGGATGGGAGACTTCTTGAAGCTGAAATACAACTCAGAGACATGGTAGGCCGAGGGGTTTTGCCAAATGCACAGATATATAATATGCTCATTGATGGTAGCTCTACAGAGGGGAAGCTGAAAGATGCTTTCAGATTTTTTGATGAGATGGCAAAAAATGGGATAAGTCCAACACTTGCAACCTACAATGCAATCATACATGGACTCTGCAAGAAAGGAAGGATGATTGAAGCTGAAGATTATGTGTCTCAAATTACAAGCAGTGGTTATAGTCCCGATGTCATCACATACAACTCCCTAATTTCAGGTTATTCTGATACAACAAACACCCAGAAATGTCTGGAATTATATGAAACTATGAAGAATCTGGGCATCAAACCTACTTTGAATACGTATCATCCTTTAATTAGTGGATGTAGCAGGGACAATATGGTATTAGCAGAAAAGTTGTTTAATGAGATGTTACAAATGGGCTTGCATCCTGATCGAATCATATATAATGCACTCATCCACGGTTATGCAGAGCATGGAGATACTCAGAAGGCACTTTCTTTGCACTGTGAGATGGTAAACCAGGAAATCAATGTTGACAAGATGACGTATAATAGCTTAATTCTTGGGCACTTCAAACAAGGAAAGGTGTCAGAGGTAAAGGACCTCGTCAATGATATGAAGGCTAAAGGATTGGCACCTAAAGCTGATACGTATAACTTACTTGTGAAGGGACACTGTGAACTAAAGGACTTCAGTGGCGCATATTTTTGGTACAGGGAACTGGTTGAGAATGGTTATCTTCTAAACGTCTCCACATGCAATGAGCTTACAACTGGCCTCCAAAAGGAGGGGAGGTTTCAAGAGGCCCAGGTTATCTGCTTAGAAATGAGTGCTAAAGGAATGGATGATGTTAGCTCTAATGAAGATGCAATTTCTGTTGCCAAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

810

Amino Acids

91.13

Weight (kDa)

7.13

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	103 - 231	3.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	164 - 213	4.5e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	181 - 327	2.2e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	201 - 232	5.4e-12	PPR repeat
PPR_2	PF13041	203 - 243	3e-12	PPR repeat family
PPR	PF01535	207 - 234	1.8e-08	PPR repeat
PPR_3	PF13812	208 - 250	1.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	237 - 267	4.5e-10	PPR repeat
PPR_2	PF13041	238 - 287	4.1e-18	PPR repeat family
PPR	PF01535	241 - 269	7.3e-08	PPR repeat
PPR_3	PF13812	264 - 316	3.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	271 - 302	1.4e-11	PPR repeat
PPR_2	PF13041	274 - 320	2e-17	PPR repeat family
PPR	PF01535	276 - 306	3e-09	PPR repeat
PPR_long	PF17177	323 - 456	5.3e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	332 - 390	9.7e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	348 - 457	3.3e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	375 - 407	6.1e-10	PPR repeat
PPR_2	PF13041	378 - 426	3.9e-14	PPR repeat family
PPR	PF01535	381 - 411	6.7e-06	PPR repeat
PPR_3	PF13812	402 - 461	4.8e-15	Pentatricopeptide repeat domain
PPR_long	PF17177	403 - 500	6e-12	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	409 - 442	2.6e-07	PPR repeat
PPR_2	PF13041	413 - 460	6.3e-14	PPR repeat family
PPR_long	PF17177	438 - 534	2.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	448 - 497	5.7e-14	PPR repeat family
PPR_1	PF12854	481 - 511	3.1e-08	PPR repeat
PPR_2	PF13041	483 - 529	1.6e-09	PPR repeat family
PPR_3	PF13812	508 - 563	1.2e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	514 - 546	3e-08	PPR repeat
PPR_long	PF17177	516 - 632	2.3e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	518 - 567	1.3e-15	PPR repeat family
TPR_24	PF23276	523 - 615	5.2e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	549 - 576	5.6e-08	PPR repeat
PPR_2	PF13041	553 - 601	3.1e-12	PPR repeat family
PPR_3	PF13812	583 - 635	1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	588 - 637	2.4e-12	PPR repeat family
TPR_24	PF23276	639 - 754	4.2e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	653 - 686	1.2e-06	PPR repeat
PPR_2	PF13041	657 - 701	9.5e-11	PPR repeat family
PPR	PF01535	661 - 687	2e-06	PPR repeat
PPR_3	PF13812	683 - 737	1.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	694 - 740	5.9e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12100
fragaria_vesca	FvH4_6g17750 FvH4_6g17750 FvH4_6g17750 FvH4_6g17750
malus_domestica	MD12G1016300.v1.1 MD14G1014400.v1.1
prunus_persica	Prupe.7G119000_v2.0.a1
pyrus_communis	pycom12g01340 pycom14g01210
rosa_chinensis	RchiOBHm_Chr3g0471971
rosa_laevigata	RLG00000024115
rosa_multiflora	Rmu_sc0000090.1_g000022
rosa_roxburghii	Rroxscaffold_6G00409400
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172800 Rh3BG198300 Rh3CG189400 Rh3CG196800 Rh3DG176100
rosa_wichuraiana	Rw3G016780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	624, 834, 1475
AccB1I	GGYRCC	1 cut(s)	2176
AccBSI	CCGCTC	1 cut(s)	278
AccI	GTMKAC	3 cut(s)	943, 1037, 1174
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	1132
AciI	CCGC	8 cut(s)	151, 192, 276, 527, 536, 539, 1091, 1301
AclWI	GGATC	2 cut(s)	810, 1034
AcoI	YGGCCR	2 cut(s)	399, 500
AcsI	RAATTY	2 cut(s)	1271, 1345
AcuI	CTGAAG	2 cut(s)	1743, 2218
AdeI	CACNNNGTG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	82, 1314, 2255
AfiI	CCNNNNNNNGG	3 cut(s)	175, 2326, 2329
AflIII	ACRYGT	1 cut(s)	732
AjnI	CCWGG	3 cut(s)	1010, 2061, 2349
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	8 cut(s)	19, 42, 1274, 1346, 1492, 1521, 1740, 2296
Alw44I	GTGCAC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	810, 1034
Aor13HI	TCCGGA	1 cut(s)	1132
AoxI	GGCC	7 cut(s)	178, 399, 500, 1235, 1537, 2317, 2346
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	2 cut(s)	1271, 1345
AseI	ATTAAT	1 cut(s)	1371
Asp700I	GAANNNNTTC	3 cut(s)	443, 614, 680
AspLEI	GCGC	2 cut(s)	12, 2243
AspS9I	GGNCC	3 cut(s)	178, 2143, 2347
AsuHPI	GGTGA	5 cut(s)	553, 773, 838, 983, 1171
AsuII	TTCGAA	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	2143
BaeGI	GKGCMC	2 cut(s)	326, 2112
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	2176
BarI	GAAGNNNNNNTAC	2 cut(s)	1500, 1532
BauI	CACGAG	1 cut(s)	1224
BbsI	GAAGAC	1 cut(s)	1428
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	402
BceAI	ACGGC	2 cut(s)	333, 535
BcgI	CGANNNNNNTGC	2 cut(s)	1955, 1989
BciT130I	CCWGG	3 cut(s)	1012, 2063, 2351
BclI	TGATCA	1 cut(s)	976
BcoDI	GTCTC	8 cut(s)	19, 42, 1274, 1346, 1492, 1521, 1740, 2296
BfaI	CTAG	2 cut(s)	419, 561
BfmI	CTRYAG	1 cut(s)	1593
BisI	GCNGC	2 cut(s)	416, 537
BlsI	GCNGC	2 cut(s)	417, 538
Bme1390I	CCNGG	3 cut(s)	1012, 2063, 2351
Bme18I	GGWCC	1 cut(s)	2143
BmgT120I	GGNCC	3 cut(s)	178, 2143, 2347
BmiI	GGNNCC	2 cut(s)	1468, 2178
BmrFI	CCNGG	3 cut(s)	1012, 2063, 2351
BmsI	GCATC	7 cut(s)	327, 658, 1254, 1603, 1869, 1975, 2398
BoxI	GACNNNNGTC	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	1428
BpmI	CTGGAG	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	741
BsaAI	YACGTR	2 cut(s)	1881, 2193
BsaBI	GATNNNNATC	1 cut(s)	957
BsaJI	CCNNGG	4 cut(s)	1540, 1999, 2349, 2424
BsaWI	WCCGGW	1 cut(s)	1132
BsaXI	ACNNNNNCTCC	6 cut(s)	251, 281, 761, 791, 2321, 2351
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 2326, 2329
Bse1I	ACTGG	3 cut(s)	1126, 2268, 2320
Bse3DI	GCAATG	1 cut(s)	2308
Bse8I	GATNNNNATC	1 cut(s)	957
BseAI	TCCGGA	1 cut(s)	1132
BseBI	CCWGG	3 cut(s)	1012, 2063, 2351
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	4 cut(s)	1540, 1999, 2349, 2424
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	3 cut(s)	175, 2326, 2329
BseMI	GCAATG	1 cut(s)	2308
BseMII	CTCAG	3 cut(s)	953, 1537, 2039
BseNI	ACTGG	3 cut(s)	1126, 2268, 2320
BseRI	GAGGAG	5 cut(s)	158, 229, 302, 715, 1109
BseSI	GKGCMC	2 cut(s)	326, 2112
BseX3I	CGGCCG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	402
BseYI	CCCAGC	2 cut(s)	341, 547
BsgI	GTGCAG	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	503
BshFI	GGCC	7 cut(s)	180, 401, 502, 1237, 1539, 2319, 2348
BshNI	GGYRCC	1 cut(s)	2176
BshVI	ATCGAT	1 cut(s)	741
BsiEI	CGRYCG	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	3 cut(s)	503, 923, 1133
BslFI	GGGAC	5 cut(s)	196, 566, 1746, 1925, 2226
BslI	CCNNNNNNNGG	3 cut(s)	175, 2326, 2329
BsmAI	GTCTC	8 cut(s)	19, 42, 1274, 1346, 1492, 1521, 1740, 2296
BsmBI	CGTCTC	3 cut(s)	19, 1346, 2296
BsmFI	GGGAC	5 cut(s)	196, 566, 1746, 1925, 2226
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	7 cut(s)	180, 401, 502, 1237, 1539, 2319, 2348
Bsp119I	TTCGAA	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	326, 2112
Bsp13I	TCCGGA	1 cut(s)	1132
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
BspACI	CCGC	8 cut(s)	151, 192, 276, 527, 536, 539, 1091, 1301
BspANI	GGCC	7 cut(s)	180, 401, 502, 1237, 1539, 2319, 2348
BspCNI	CTCAG	3 cut(s)	954, 1536, 2038
BspDI	ATCGAT	1 cut(s)	741
BspEI	TCCGGA	1 cut(s)	1132
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	1468, 2178
BspPI	GGATC	2 cut(s)	810, 1034
BspT104I	TTCGAA	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	2176
BsrBI	CCGCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	2308
BsrGI	TGTACA	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	1126, 2268, 2320
BssECI	CCNNGG	4 cut(s)	1540, 1999, 2349, 2424
BssMI	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
BssNAI	GTATAC	2 cut(s)	944, 1038
BssSI	CACGAG	1 cut(s)	1224
BssT1I	CCWWGG	1 cut(s)	2424
Bst1107I	GTATAC	2 cut(s)	944, 1038
Bst2BI	CACGAG	1 cut(s)	1224
Bst2UI	CCWGG	3 cut(s)	1012, 2063, 2351
Bst4CI	ACNGT	3 cut(s)	2003, 2048, 2219
Bst6I	CTCTTC	4 cut(s)	24, 269, 584, 891
BstAUI	TGTACA	1 cut(s)	80
BstBAI	YACGTR	2 cut(s)	1881, 2193
BstBI	TTCGAA	1 cut(s)	437
BstC8I	GCNNGC	4 cut(s)	155, 322, 534, 1964
BstDEI	CTNAG	5 cut(s)	33, 962, 1523, 2025, 2362
BstDSI	CCRYGG	1 cut(s)	1999
BstENI	CCTNNNNNAGG	2 cut(s)	173, 2324
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	12, 2243
BstKTI	GATC	6 cut(s)	68, 741, 805, 979, 1029, 1975
BstMAI	GTCTC	8 cut(s)	19, 42, 1274, 1346, 1492, 1521, 1740, 2296
BstMBI	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
BstMCI	CGRYCG	1 cut(s)	503
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 850, 2183
BstNI	CCWGG	3 cut(s)	1012, 2063, 2351
BstNSI	RCATGY	2 cut(s)	310, 2301
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	3 cut(s)	1010, 2061, 2349
BstSFI	CTRYAG	1 cut(s)	1593
BstSLI	GKGCMC	2 cut(s)	326, 2112
BstSNI	TACGTA	2 cut(s)	1881, 2193
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	402
BstV2I	GAAGAC	1 cut(s)	1428
BstZ17I	GTATAC	2 cut(s)	944, 1038
BstZI	CGGCCG	1 cut(s)	500
Bsu15I	ATCGAT	1 cut(s)	741
BsuRI	GGCC	7 cut(s)	180, 401, 502, 1237, 1539, 2319, 2348
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	1999
BtsI	GCAGTG	1 cut(s)	1756
BtsIMutI	CAGTG	4 cut(s)	1756, 2044, 2215, 2242
Cac8I	GCNNGC	4 cut(s)	155, 322, 534, 1964
CfoI	GCGC	2 cut(s)	12, 2243
Cfr13I	GGNCC	3 cut(s)	178, 2143, 2347
ClaI	ATCGAT	1 cut(s)	741
Csp6I	GTAC	3 cut(s)	81, 1313, 2254
CviQI	GTAC	3 cut(s)	81, 1313, 2254
DdeI	CTNAG	5 cut(s)	33, 962, 1523, 2025, 2362
DpnI	GATC	6 cut(s)	67, 740, 804, 978, 1028, 1974
DpnII	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
DraIII	CACNNNGTG	1 cut(s)	321
EaeI	YGGCCR	2 cut(s)	399, 500
EagI	CGGCCG	1 cut(s)	500
Eam1104I	CTCTTC	4 cut(s)	24, 269, 584, 891
EarI	CTCTTC	4 cut(s)	24, 269, 584, 891
EciI	GGCGGA	1 cut(s)	1316
EclXI	CGGCCG	1 cut(s)	500
Eco105I	TACGTA	2 cut(s)	1881, 2193
Eco130I	CCWWGG	1 cut(s)	2424
Eco47I	GGWCC	1 cut(s)	2143
Eco52I	CGGCCG	1 cut(s)	500
Eco57I	CTGAAG	2 cut(s)	1743, 2218
EcoNI	CCTNNNNNAGG	2 cut(s)	173, 2324
EcoO109I	RGGNCCY	1 cut(s)	2143
EcoRII	CCWGG	3 cut(s)	1010, 2061, 2349
EcoT14I	CCWWGG	1 cut(s)	2424
ErhI	CCWWGG	1 cut(s)	2424
Esp3I	CGTCTC	3 cut(s)	19, 1346, 2296
FaqI	GGGAC	5 cut(s)	196, 566, 1746, 1925, 2226
FbaI	TGATCA	1 cut(s)	976
FblI	GTMKAC	3 cut(s)	943, 1037, 1174
Fnu4HI	GCNGC	2 cut(s)	416, 537
Fsp4HI	GCNGC	2 cut(s)	416, 537
FspBI	CTAG	2 cut(s)	419, 561
GlaI	GCGC	2 cut(s)	11, 2242
GluI	GCNGC	2 cut(s)	416, 537
GsaI	CCCAGC	2 cut(s)	345, 551
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	7 cut(s)	180, 401, 502, 1237, 1539, 2319, 2348
HapII	CCGG	3 cut(s)	503, 923, 1133
HhaI	GCGC	2 cut(s)	12, 2243
Hin6I	GCGC	2 cut(s)	10, 2241
HinP1I	GCGC	2 cut(s)	10, 2241
HincII	GTYRAC	2 cut(s)	1175, 2077
HindII	GTYRAC	2 cut(s)	1175, 2077
HpaII	CCGG	3 cut(s)	503, 923, 1133
HphI	GGTGA	5 cut(s)	553, 773, 838, 983, 1171
Hpy166II	GTNNAC	8 cut(s)	324, 513, 944, 1038, 1175, 2059, 2077, 2222
Hpy188III	TCNNGA	8 cut(s)	1133, 1411, 1418, 1505, 1763, 1829, 1970, 2342
Hpy8I	GTNNAC	8 cut(s)	324, 513, 944, 1038, 1175, 2059, 2077, 2222
HpyAV	CCTTC	9 cut(s)	670, 766, 793, 802, 1324, 1701, 2023, 2155, 2203
HpyCH4III	ACNGT	3 cut(s)	2003, 2048, 2219
HpyCH4IV	ACGT	6 cut(s)	734, 1355, 1880, 2087, 2192, 2289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 850, 2183
HpyF3I	CTNAG	5 cut(s)	33, 962, 1523, 2025, 2362
HpySE526I	ACGT	6 cut(s)	734, 1355, 1880, 2087, 2192, 2289
HspAI	GCGC	2 cut(s)	10, 2241
Kpn2I	TCCGGA	1 cut(s)	1132
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
LmnI	GCTCC	3 cut(s)	162, 283, 315
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	7 cut(s)	327, 658, 1254, 1603, 1869, 1975, 2398
MaeI	CTAG	2 cut(s)	419, 561
MaeII	ACGT	6 cut(s)	734, 1355, 1880, 2087, 2192, 2289
MaeIII	GTNAC	3 cut(s)	721, 826, 1950
MalI	GATC	6 cut(s)	67, 740, 804, 978, 1028, 1974
MbiI	CCGCTC	1 cut(s)	278
MboI	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
MhlI	GDGCHC	2 cut(s)	326, 2112
MlsI	TGGCCA	1 cut(s)	401
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	5 cut(s)	80, 338, 491, 613, 1686
MmeI	TCCRAC	7 cut(s)	114, 127, 273, 327, 747, 873, 1682
Mox20I	TGGCCA	1 cut(s)	401
MroI	TCCGGA	1 cut(s)	1132
MroXI	GAANNNNTTC	3 cut(s)	443, 614, 680
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	6 cut(s)	846, 1371, 1443, 1892, 1941, 2099
MslI	CAYNNNNRTG	1 cut(s)	2004
Msp20I	TGGCCA	1 cut(s)	401
MspI	CCGG	3 cut(s)	503, 923, 1133
MspR9I	CCNGG	3 cut(s)	1012, 2063, 2351
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	3 cut(s)	1012, 2063, 2351
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	533, 850, 2183
NdeII	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
NlaIV	GGNNCC	2 cut(s)	1468, 2178
NmeAIII	GCCGAG	1 cut(s)	1565
NmuCI	GTSAC	1 cut(s)	826
NspI	RCATGY	2 cut(s)	310, 2301
NspV	TTCGAA	1 cut(s)	437
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	3 cut(s)	443, 614, 680
PfeI	GAWTC	6 cut(s)	99, 162, 1264, 1414, 1852, 1977
PflFI	GACNNNGTC	1 cut(s)	2147
PkrI	GCNGC	2 cut(s)	417, 538
PleI	GAGTC	5 cut(s)	80, 337, 490, 612, 1686
PpsI	GAGTC	5 cut(s)	80, 337, 490, 612, 1686
Ppu21I	YACGTR	2 cut(s)	1881, 2193
PpuMI	RGGWCCY	1 cut(s)	2143
PshAI	GACNNNNGTC	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	1371
PsiI	TTATAA	3 cut(s)	624, 834, 1475
Psp5II	RGGWCCY	1 cut(s)	2143
Psp6I	CCWGG	3 cut(s)	1010, 2061, 2349
PspFI	CCCAGC	2 cut(s)	341, 547
PspGI	CCWGG	3 cut(s)	1010, 2061, 2349
PspN4I	GGNNCC	2 cut(s)	1468, 2178
PspPI	GGNCC	3 cut(s)	178, 2143, 2347
PspPPI	RGGWCCY	1 cut(s)	2143
PsyI	GACNNNGTC	1 cut(s)	2147
RsaI	GTAC	3 cut(s)	82, 1314, 2255
RsaNI	GTAC	3 cut(s)	81, 1313, 2254
RseI	CAYNNNNRTG	1 cut(s)	2004
SalI	GTCGAC	1 cut(s)	1173
SaqAI	TTAA	6 cut(s)	846, 1371, 1443, 1892, 1941, 2099
SatI	GCNGC	2 cut(s)	416, 537
Sau3AI	GATC	6 cut(s)	65, 738, 802, 976, 1026, 1972
Sau96I	GGNCC	3 cut(s)	178, 2143, 2347
SchI	GAGTC	5 cut(s)	80, 338, 491, 613, 1686
ScrFI	CCNGG	3 cut(s)	1012, 2063, 2351
SduI	GDGCHC	2 cut(s)	326, 2112
SfaNI	GCATC	7 cut(s)	327, 658, 1254, 1603, 1869, 1975, 2398
SfcI	CTRYAG	1 cut(s)	1593
SfuI	TTCGAA	1 cut(s)	437
SinI	GGWCC	1 cut(s)	2143
SmiMI	CAYNNNNRTG	1 cut(s)	2004
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SnaBI	TACGTA	2 cut(s)	1881, 2193
SsiI	CCGC	8 cut(s)	151, 192, 276, 527, 536, 539, 1091, 1301
SspMI	CTAG	2 cut(s)	419, 561
StyD4I	CCNGG	3 cut(s)	1010, 2061, 2349
StyI	CCWWGG	1 cut(s)	2424
TaaI	ACNGT	3 cut(s)	2003, 2048, 2219
TaiI	ACGT	6 cut(s)	737, 1358, 1883, 2090, 2195, 2292
TaqI	TCGA	7 cut(s)	437, 480, 684, 741, 951, 1174, 1975
TatI	WGTACW	1 cut(s)	80
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	6 cut(s)	99, 162, 1264, 1414, 1852, 1977
Tru1I	TTAA	6 cut(s)	846, 1371, 1443, 1892, 1941, 2099
Tru9I	TTAA	6 cut(s)	846, 1371, 1443, 1892, 1941, 2099
TscAI	CASTG	4 cut(s)	1756, 2051, 2222, 2242
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	826
TspGWI	ACGGA	2 cut(s)	341, 377
TspRI	CASTG	4 cut(s)	1756, 2051, 2222, 2242
Tth111I	GACNNNGTC	1 cut(s)	2147
VneI	GTGCAC	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	2143
VspI	ATTAAT	1 cut(s)	1371
XagI	CCTNNNNNAGG	2 cut(s)	173, 2324
XapI	RAATTY	2 cut(s)	1271, 1345
XceI	RCATGY	2 cut(s)	310, 2301
XmiI	GTMKAC	3 cut(s)	943, 1037, 1174
XmnI	GAANNNNTTC	3 cut(s)	443, 614, 680
XspI	CTAG	2 cut(s)	419, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.