Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007205

Physical Location & Seq

Genomic Coordinates Reverse (-)

3980179 .. 3982528

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGTTCCTCGATCCAGATCGTTGTTGAGGAGAAGCAAGTGGATGTTTTGCCTCTTCAAGATCAGGATGAAAAGAAGACTCCACAAGTGTTCAATGAGCTGAGTTTCGGGAACCATGGGGGCTGTTGTGCAATTTGCTTGGATACTATACCTCTTCAAGAAACAGCTATGGTTAAAGGCTGTGAGCATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAGTTACAAGGAGAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCACCGCGCTCTCGATGGAAGCGTTGAAGATTTCATGTTCGAGGAGAGTGTATGCCTCCTCCTGAGGGCATCATGGTTCCAGCCACTGGAAGCAGTGGAGCGGGTTTCAGACAATGACAATTTCAACTATGATTTCGACATTCCACCTGAGTATGAGGAGGAGGATGAGGACGACGATGACCTTGACGAGTTTTATATGCAAGGTTCAAGTCTTCGATTAGGAAACCGGAGGTGGGGTGACAATGGATTTGTGAGGGCAGGCCGCCAAGAAGCAAGGCCAGTCCAACATAAGAACCGAGGTGGCCAGGCTTCTGGCTCTGAACCCGCCTCTTCATCCTCATGTGAGCCAAAGGAGAAGACTAGCAGTGCCATAACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTGCAAACAAAGCTGCGGAAGCAGTAGCAGCTGCAAAGCATGAGGCCCTTTTGGTTAGGTTGGGAAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

254

Amino Acids

28.49

Weight (kDa)

5.06

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	42 - 86	1.9e-07	Ring finger domain
zf-C3HC4	PF00097	43 - 85	1.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430
fragaria_vesca	FvH4_3g27900 FvH4_3g27900
malus_domestica	MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1
prunus_persica	Prupe.4G267100_v2.0.a1
pyrus_communis	pycom03g12220 pycom12g08720
rosa_chinensis	RchiOBHm_Chr5g0050631
rosa_laevigata	RLG00000034713
rosa_multiflora	Rmu_co7960075.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030170
rosa_rugosa	Rorug05G0262200
rosa_samantha	Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900
rosa_wichuraiana	Rw5G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	251
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccBSI	CCGCTC	1 cut(s)	382
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	286, 382, 544, 606, 707
AclWI	GGATC	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	583
AfiI	CCNNNNNNNGG	3 cut(s)	346, 367, 514
AgsI	TTSAA	6 cut(s)	59, 94, 158, 308, 406, 489
AjiI	CACGTC	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	6 cut(s)	100, 167, 259, 692, 704, 722
AluI	AGCT	6 cut(s)	100, 167, 259, 692, 704, 722
AlwI	GGATC	1 cut(s)	7
AlwNI	CAGNNNCTG	1 cut(s)	367
AoxI	GGCC	4 cut(s)	541, 557, 583, 735
ApeKI	GCWGC	4 cut(s)	692, 704, 719, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	736
AsuHPI	GGTGA	1 cut(s)	530
AxyI	CCTNAGG	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	585
BbsI	GAAGAC	3 cut(s)	83, 485, 644
BbvI	GCAGC	4 cut(s)	679, 691, 709, 731
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	587
BciVI	GTATCC	1 cut(s)	136
BfaI	CTAG	1 cut(s)	642
BfuAI	ACCTGC	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	5 cut(s)	544, 693, 705, 720, 723
BlsI	GCNGC	5 cut(s)	545, 694, 706, 721, 724
Bme1390I	CCNGG	1 cut(s)	587
BmgBI	CACGTC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	736
BmiI	GGNNCC	2 cut(s)	113, 359
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	1 cut(s)	359
BpiI	GAAGAC	3 cut(s)	83, 485, 644
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	115, 577
BsaWI	WCCGGW	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 367, 514
Bse1I	ACTGG	2 cut(s)	372, 560
Bse21I	CCTNAGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	684
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	2 cut(s)	115, 577
BseGI	GGATG	4 cut(s)	49, 73, 451, 614
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	3 cut(s)	346, 367, 514
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	3 cut(s)	92, 335, 420
BseNI	ACTGG	2 cut(s)	372, 560
BseRI	GAGGAG	5 cut(s)	44, 329, 338, 452, 455
BseXI	GCAGC	4 cut(s)	679, 691, 709, 731
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	543, 559, 585, 737
BsiSI	CCGG	1 cut(s)	508
BslI	CCNNNNNNNGG	3 cut(s)	346, 367, 514
BsnI	GGCC	4 cut(s)	543, 559, 585, 737
Bsp143I	GATC	3 cut(s)	12, 18, 61
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	5 cut(s)	286, 382, 544, 606, 707
BspANI	GGCC	4 cut(s)	543, 559, 585, 737
BspCNI	CTCAG	3 cut(s)	93, 336, 421
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	113, 359
BspMI	ACCTGC	1 cut(s)	251
BspPI	GGATC	1 cut(s)	7
BsrBI	CCGCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	2 cut(s)	372, 560
BssECI	CCNNGG	2 cut(s)	115, 577
BssMI	GATC	3 cut(s)	12, 18, 61
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	3 cut(s)	60, 159, 616
BstC8I	GCNNGC	3 cut(s)	189, 541, 666
BstDEI	CTNAG	3 cut(s)	101, 344, 429
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	4 cut(s)	49, 73, 451, 614
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	3 cut(s)	15, 21, 64
BstMBI	GATC	3 cut(s)	12, 18, 61
BstMWI	GCNNNNNNNGC	4 cut(s)	674, 701, 710, 719
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	679, 691, 709, 731
BstV2I	GAAGAC	3 cut(s)	83, 485, 644
BstXI	CCANNNNNNTGG	1 cut(s)	593
Bsu36I	CCTNAGG	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	4 cut(s)	543, 559, 585, 737
BtgI	CCRYGG	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	204
BtsCI	GGATG	4 cut(s)	49, 73, 451, 614
BtsI	GCAGTG	2 cut(s)	381, 652
BtsIMutI	CAGTG	3 cut(s)	365, 381, 652
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	3 cut(s)	189, 541, 666
CaiI	CAGNNNCTG	1 cut(s)	367
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	736
CviAII	CATG	6 cut(s)	116, 188, 316, 354, 621, 731
DdeI	CTNAG	3 cut(s)	101, 344, 429
DpnI	GATC	3 cut(s)	14, 20, 63
DpnII	GATC	3 cut(s)	12, 18, 61
EaeI	YGGCCR	1 cut(s)	583
Eam1104I	CTCTTC	3 cut(s)	60, 159, 616
EarI	CTCTTC	3 cut(s)	60, 159, 616
Eco130I	CCWWGG	1 cut(s)	115
Eco81I	CCTNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	736
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	6 cut(s)	119, 191, 319, 357, 624, 734
FatI	CATG	6 cut(s)	115, 187, 315, 353, 620, 730
FauI	CCCGC	2 cut(s)	375, 613
Fnu4HI	GCNGC	5 cut(s)	544, 693, 705, 720, 723
FokI	GGATG	4 cut(s)	56, 80, 458, 601
Fsp4HI	GCNGC	5 cut(s)	544, 693, 705, 720, 723
FspBI	CTAG	1 cut(s)	642
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	5 cut(s)	544, 693, 705, 720, 723
HaeIII	GGCC	4 cut(s)	543, 559, 585, 737
HapII	CCGG	1 cut(s)	508
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	6 cut(s)	119, 191, 319, 357, 624, 734
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	391, 601
Hpy188III	TCNNGA	7 cut(s)	16, 59, 65, 109, 158, 293, 343
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	458
HpyAV	CCTTC	2 cut(s)	654, 750
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	6 cut(s)	131, 207, 481, 668, 695, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	674, 701, 710, 719
HpyF3I	CTNAG	3 cut(s)	101, 344, 429
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	6 cut(s)	119, 191, 319, 357, 624, 734
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	12, 18, 61
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	4 cut(s)	679, 691, 709, 731
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	3 cut(s)	199, 224, 518
MalI	GATC	3 cut(s)	14, 20, 63
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	3 cut(s)	12, 18, 61
MboII	GAAGA	7 cut(s)	47, 88, 146, 320, 485, 603, 649
MlsI	TGGCCA	1 cut(s)	585
MluCI	AATT	2 cut(s)	132, 400
MluNI	TGGCCA	1 cut(s)	585
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	589
Mox20I	TGGCCA	1 cut(s)	585
MscI	TGGCCA	1 cut(s)	585
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	619
Msp20I	TGGCCA	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	4 cut(s)	674, 701, 710, 719
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	12, 18, 61
NlaIII	CATG	6 cut(s)	119, 191, 319, 357, 624, 734
NlaIV	GGNNCC	2 cut(s)	113, 359
NmuCI	GTSAC	2 cut(s)	199, 518
NspI	RCATGY	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	5 cut(s)	545, 694, 706, 721, 724
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	113, 359
PspPI	GGNCC	1 cut(s)	736
PstNI	CAGNNNCTG	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	722
RseI	CAYNNNNRTG	1 cut(s)	619
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	5 cut(s)	544, 693, 705, 720, 723
Sau3AI	GATC	3 cut(s)	12, 18, 61
Sau96I	GGNCC	1 cut(s)	736
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	587
SfaNI	GCATC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	619
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	2 cut(s)	132, 400
SsiI	CCGC	5 cut(s)	286, 382, 544, 606, 707
SspMI	CTAG	1 cut(s)	642
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	5 cut(s)	11, 294, 321, 417, 496
TasI	AATT	2 cut(s)	132, 400
TauI	GCSGC	1 cut(s)	546
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	3 cut(s)	372, 381, 652
TseFI	GTSAC	2 cut(s)	199, 518
TseI	GCWGC	4 cut(s)	692, 704, 719, 722
Tsp45I	GTSAC	2 cut(s)	199, 518
TspDTI	ATGAA	4 cut(s)	84, 304, 603, 695
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	372, 381, 652
Van91I	CCANNNNNTGG	1 cut(s)	367
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.