Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7960075.1

Orthogroup ID

OG0007205

Physical Location & Seq

Genomic Coordinates Reverse (-)

125 .. 502

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7960075.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

gccacatggtttgagcctctagttgtggaggatcgcgaagatgtgtatgcatatgatgattctgaagattattatccctacgaggatgaagaggatgacctagatgaagcttacttcagcagttcatcgagtatccgtattggtaatcgaaggtggggagataatgggtatgtgagcgctggacggcaagaagcaaggcctgttcacagatcaaatatccaggaagctggtgctagttcttctcgtgaacctagaaagaaagaggcttcaatggataaaactgggagacgggcaaagagggcacttaagcgagaagccgcggataaggctgctgcagcaaaacatgagctgcatttggcaaggttgggccggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

125

Amino Acids

14.28

Weight (kDa)

5.69

Isoelectric Point (pI)

65.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430
fragaria_vesca	FvH4_3g27900 FvH4_3g27900
malus_domestica	MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1
prunus_persica	Prupe.4G267100_v2.0.a1
pyrus_communis	pycom03g12220 pycom12g08720
rosa_chinensis	RchiOBHm_Chr5g0050631
rosa_laevigata	RLG00000034713
rosa_multiflora	Rmu_co7960075.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030170
rosa_rugosa	Rorug05G0262200
rosa_samantha	Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900
rosa_wichuraiana	Rw5G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	36, 320
AciI	CCGC	2 cut(s)	318, 320
AclWI	GGATC	1 cut(s)	39
AcuI	CTGAAG	2 cut(s)	84, 100
AfeI	AGCGCT	1 cut(s)	178
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	110, 227, 349
AluI	AGCT	3 cut(s)	110, 227, 349
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	39
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	2 cut(s)	197, 367
ApeKI	GCWGC	4 cut(s)	329, 332, 335, 349
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	367
BaeGI	GKGCMC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	243
BbvI	GCAGC	4 cut(s)	316, 319, 336, 347
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	4 cut(s)	20, 101, 234, 252
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	143
BisI	GCNGC	5 cut(s)	318, 330, 333, 336, 350
BlsI	GCNGC	5 cut(s)	319, 331, 334, 337, 351
Bme1390I	CCNGG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	91, 100
BseJI	GATNNNNATC	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	286
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	4 cut(s)	316, 319, 336, 347
Bsh1236I	CGCG	2 cut(s)	36, 320
BshFI	GGCC	2 cut(s)	199, 369
BsiSI	CCGG	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	280
BsmBI	CGTCTC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	199, 369
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	31, 209
Bsp68I	TCGCGA	1 cut(s)	36
BspACI	CCGC	2 cut(s)	318, 320
BspANI	GGCC	2 cut(s)	199, 369
BspFNI	CGCG	2 cut(s)	36, 320
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	31, 209
BssSI	CACGAG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	305
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	2 cut(s)	91, 100
BstFNI	CGCG	2 cut(s)	36, 320
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	34, 212
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	2 cut(s)	31, 209
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 326, 335
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	304
BstUI	CGCG	2 cut(s)	36, 320
BstV1I	GCAGC	4 cut(s)	316, 319, 336, 347
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	199, 369
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	91, 100
BtuMI	TCGCGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	367
Cfr42I	CCGCGG	1 cut(s)	321
CspCI	CAANNNNNGTGG	1 cut(s)	27
CviAII	CATG	2 cut(s)	6, 344
CviJI	RGCY	9 cut(s)	16, 110, 199, 227, 266, 317, 329, 349, 369
CviKI_1	RGCY	9 cut(s)	16, 110, 199, 227, 266, 317, 329, 349, 369
DpnI	GATC	2 cut(s)	33, 211
DpnII	GATC	2 cut(s)	31, 209
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	199
Eco47III	AGCGCT	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	84, 100
EcoRII	CCWGG	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	2 cut(s)	9, 347
FaiI	YATR	6 cut(s)	7, 48, 52, 54, 171, 345
FatI	CATG	2 cut(s)	5, 343
FauNDI	CATATG	1 cut(s)	52
Fnu4HI	GCNGC	5 cut(s)	318, 330, 333, 336, 350
FokI	GGATG	2 cut(s)	98, 107
Fsp4HI	GCNGC	5 cut(s)	318, 330, 333, 336, 350
FspBI	CTAG	4 cut(s)	20, 101, 234, 252
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	5 cut(s)	318, 330, 333, 336, 350
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	199, 369
HapII	CCGG	1 cut(s)	370
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	9, 347
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	205, 248
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	35, 245
Hpy8I	GTNNAC	2 cut(s)	205, 248
HpyAV	CCTTC	1 cut(s)	144
HpyCH4V	TGCA	3 cut(s)	50, 335, 352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 326, 335
Hsp92II	CATG	2 cut(s)	9, 347
HspAI	GCGC	1 cut(s)	177
KspI	CCGCGG	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	31, 209
LpnPI	CCDG	6 cut(s)	165, 206, 213, 213, 233, 267
Lsp1109I	GCAGC	4 cut(s)	316, 319, 336, 347
MaeI	CTAG	4 cut(s)	20, 101, 234, 252
MalI	GATC	2 cut(s)	33, 211
MboI	GATC	2 cut(s)	31, 209
MboII	GAAGA	4 cut(s)	50, 77, 101, 231
MhlI	GDGCHC	1 cut(s)	304
MnlI	CCTC	6 cut(s)	22, 27, 76, 85, 256, 291
Mph1103I	ATGCAT	1 cut(s)	52
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	320
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	36, 320
MwoI	GCNNNNNNNGC	3 cut(s)	299, 326, 335
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	2 cut(s)	31, 209
NlaIII	CATG	2 cut(s)	9, 347
NruI	TCGCGA	1 cut(s)	36
NsiI	ATGCAT	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	5 cut(s)	319, 331, 334, 337, 351
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	367
PstI	CTGCAG	1 cut(s)	337
RruI	TCGCGA	1 cut(s)	36
SacII	CCGCGG	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	5 cut(s)	318, 330, 333, 336, 350
Sau3AI	GATC	2 cut(s)	31, 209
Sau96I	GGNCC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	7 cut(s)	102, 112, 155, 229, 253, 351, 365
SfcI	CTRYAG	1 cut(s)	333
Sfr303I	CCGCGG	1 cut(s)	321
SgrBI	CCGCGG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	318, 320
SspMI	CTAG	4 cut(s)	20, 101, 234, 252
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	219
TaqI	TCGA	2 cut(s)	128, 148
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseI	GCWGC	4 cut(s)	329, 332, 335, 349
TspDTI	ATGAA	3 cut(s)	102, 114, 120
TspGWI	ACGGA	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	305
XspI	CTAG	4 cut(s)	20, 101, 234, 252
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.