Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007205

Physical Location & Seq

Genomic Coordinates Reverse (-)

22271152 .. 22271651

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1166600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTCGAGGAGAGTGTCTGCCTACTCCTTAGAGCCAAATGGTTTGAGCCGTTAGTTGTGGAGGAGCGTGAAGATGTGTATGAAGGCCATGAGGATTATTATTGCTATCCCTATGAGGATGAAGAGGATGATGATCTAGATGACGCTTACTTCAGTAGTTCATCGGTTATCCGGATTGGTAATCGAAGATGGGGAGATAATGGATACGTGAGGGGTGGGCGTCAAGAAGCAAGGCCTGTACGCAGATCAAACATACAGGACCCGGGTGCTAGTTCGTCTGGTGAGCCTAGGAAGAAAGAGGCTGCAGTGGATAAAACCGGGAGACGGGCAAAGCGGGCACTCAAACGGGAAGCGGCTGATAAGGCAGCTGCAGAGAAACATCAGCAGCATTTGGCGAGGTTGGGTCGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

138

Amino Acids

15.81

Weight (kDa)

5.98

Isoelectric Point (pI)

64.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430
fragaria_vesca	FvH4_3g27900 FvH4_3g27900
malus_domestica	MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1
prunus_persica	Prupe.4G267100_v2.0.a1
pyrus_communis	pycom03g12220 pycom12g08720
rosa_chinensis	RchiOBHm_Chr5g0050631
rosa_laevigata	RLG00000034713
rosa_multiflora	Rmu_co7960075.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030170
rosa_rugosa	Rorug05G0262200
rosa_samantha	Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900
rosa_wichuraiana	Rw5G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	2 cut(s)	334, 353
AcuI	CTGAAG	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	324
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
Alw26I	GTCTC	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	2 cut(s)	85, 233
ApeKI	GCWGC	4 cut(s)	302, 365, 368, 385
AspA2I	CCTAGG	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	3 cut(s)	263, 264, 319
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	259
AvrII	CCTAGG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	340
BbvI	GCAGC	4 cut(s)	289, 355, 377, 397
BccI	CCATC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	197
BcnI	CCSGG	3 cut(s)	263, 264, 319
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	3 cut(s)	137, 270, 288
BfmI	CTRYAG	2 cut(s)	303, 369
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	5 cut(s)	303, 354, 366, 369, 386
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	5 cut(s)	304, 355, 367, 370, 387
Bme1390I	CCNGG	3 cut(s)	263, 264, 319
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	3 cut(s)	263, 264, 319
BpuMI	CCSGG	3 cut(s)	263, 264, 319
BsaAI	YACGTR	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	262, 287
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	262, 287
BseGI	GGATG	2 cut(s)	124, 133
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseRI	GAGGAG	2 cut(s)	23, 77
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	4 cut(s)	289, 355, 377, 397
BshFI	GGCC	2 cut(s)	87, 235
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	172, 263, 318
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	316
BsmBI	CGTCTC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	87, 235
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	133, 245
BspACI	CCGC	2 cut(s)	334, 353
BspANI	GGCC	2 cut(s)	87, 235
BspEI	TCCGGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	2 cut(s)	307, 373
BssECI	CCNNGG	2 cut(s)	262, 287
BssMI	GATC	2 cut(s)	133, 245
BssNI	GRCGYC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	287
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	124, 133
BstKTI	GATC	2 cut(s)	136, 248
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	2 cut(s)	133, 245
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 362
BstSCI	CCNGG	3 cut(s)	261, 262, 317
BstSFI	CTRYAG	2 cut(s)	303, 369
BstSLI	GKGCMC	1 cut(s)	340
BstV1I	GCAGC	4 cut(s)	289, 355, 377, 397
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	87, 235
BtsCI	GGATG	2 cut(s)	124, 133
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	259
Cfr9I	CCCGGG	1 cut(s)	262
CseI	GACGC	2 cut(s)	152, 209
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	8 cut(s)	35, 49, 87, 235, 286, 302, 356, 368
CviKI_1	RGCY	8 cut(s)	35, 49, 87, 235, 286, 302, 356, 368
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	2 cut(s)	135, 247
DpnII	GATC	2 cut(s)	133, 245
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	287
Eco147I	AGGCCT	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	1 cut(s)	92
FaiI	YATR	4 cut(s)	81, 90, 114, 254
FatI	CATG	1 cut(s)	88
FauI	CCCGC	1 cut(s)	327
Fnu4HI	GCNGC	5 cut(s)	303, 354, 366, 369, 386
FokI	GGATG	2 cut(s)	131, 140
Fsp4HI	GCNGC	5 cut(s)	303, 354, 366, 369, 386
FspBI	CTAG	3 cut(s)	137, 270, 288
GluI	GCNGC	5 cut(s)	303, 354, 366, 369, 386
HaeIII	GGCC	2 cut(s)	87, 235
HapII	CCGG	3 cut(s)	172, 263, 318
HgaI	GACGC	2 cut(s)	152, 209
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	92
HpaII	CCGG	3 cut(s)	172, 263, 318
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	137, 172, 224
HpyAV	CCTTC	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	305, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 362
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	92
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	133, 245
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	185, 242, 249, 264, 276, 331
Lsp1109I	GCAGC	4 cut(s)	289, 355, 377, 397
MaeI	CTAG	3 cut(s)	137, 270, 288
MaeII	ACGT	1 cut(s)	207
MalI	GATC	2 cut(s)	135, 247
MboI	GATC	2 cut(s)	133, 245
MboII	GAAGA	4 cut(s)	83, 134, 198, 304
MhlI	GDGCHC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	7 cut(s)	55, 85, 109, 118, 204, 292, 390
MroI	TCCGGA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	3 cut(s)	172, 263, 318
MspR9I	CCNGG	3 cut(s)	263, 264, 319
MwoI	GCNNNNNNNGC	2 cut(s)	335, 362
NciI	CCSGG	3 cut(s)	263, 264, 319
NdeII	GATC	2 cut(s)	133, 245
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	235
PkrI	GCNGC	5 cut(s)	304, 355, 367, 370, 387
Ppu21I	YACGTR	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	259
PspPPI	RGGWCCY	1 cut(s)	259
PstI	CTGCAG	2 cut(s)	307, 373
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SatI	GCNGC	5 cut(s)	303, 354, 366, 369, 386
Sau3AI	GATC	2 cut(s)	133, 245
Sau96I	GGNCC	1 cut(s)	259
ScrFI	CCNGG	3 cut(s)	263, 264, 319
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	3 cut(s)	210, 370, 401
SfcI	CTRYAG	2 cut(s)	303, 369
SinI	GGWCC	1 cut(s)	259
SmaI	CCCGGG	1 cut(s)	264
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	2 cut(s)	334, 353
SspMI	CTAG	3 cut(s)	137, 270, 288
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	3 cut(s)	261, 262, 317
StyI	CCWWGG	1 cut(s)	287
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	6, 184
TauI	GCSGC	1 cut(s)	356
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	4 cut(s)	302, 365, 368, 385
TspDTI	ATGAA	3 cut(s)	96, 135, 150
TspMI	CCCGGG	1 cut(s)	262
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	259
XbaI	TCTAGA	1 cut(s)	136
XmaI	CCCGGG	1 cut(s)	262
XmaJI	CCTAGG	1 cut(s)	287
XspI	CTAG	3 cut(s)	137, 270, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.