Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007205

Physical Location & Seq

Genomic Coordinates Reverse (-)

12607050 .. 12609947

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGACTTCGGTCATCAACATGGACGGTCATGATCAGCTACTCACCGATGATCTTACCGATTTATCCACCCTGCAACATCATCACGATCAGGGGGAAATGCAGAGCAAAGAGGAAAATGTTGAAAAGAAATGTGGGAATCATGATGGGGTTTGTGCAATATGCTTGGATGAGATTGTGCTTCAAGACACCGCTCTGATAAAAGGTTGCGAGCATGCCTACTGCGCAACCTGTATTCTTCGTTGGGTGACATACAGCCAAAAACCCACCTGCCCTCAGTGTAAACATCCATTTGAATTCCTGAACGTCCATCGTTCCCTTGATGGCAGCATACAAGATTACATGTTCGAGGAGAGTGTGTGCCTACTCCTTAGAGCCAAATGGTTTGAGCCGTTAGTTGTGGAGGAGCGTGAAGATGTGTATGATGGCCATGAGGATTATTATTACTATCCCTATGAGGATGAAGAGGATGATGATCTAGACGACGCTTACTTCAGCAGTTCATCGGTTATCCGGATTGGTAATCGAAGATGGGGAGATAATGGATACGTGAGGGGTGGGCGTCAAGAAGCAAGGCCTGTACGTAGATCAAACATACAGGACCCGGGTGCTAGTTCGTCTTGTGAGCCTAGGAAGAAAGAGGCTGCAGTGGATAAAACCGGGAGAAGGGCAAAGCGGGCGCTCAAACGGGAAGCGGCTGACAAGGCAGCCGCAGAGAAACATCAGCAGCATTTGGCGAGGTTGGGTCGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

251

Amino Acids

28.69

Weight (kDa)

5.39

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430
fragaria_vesca	FvH4_3g27900 FvH4_3g27900
malus_domestica	MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1
prunus_persica	Prupe.4G267100_v2.0.a1
pyrus_communis	pycom03g12220 pycom12g08720
rosa_chinensis	RchiOBHm_Chr5g0050631
rosa_laevigata	RLG00000034713
rosa_multiflora	Rmu_co7960075.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030170
rosa_rugosa	Rorug05G0262200
rosa_samantha	Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900
rosa_wichuraiana	Rw5G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc16I	TGCGCA	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	191
AccIII	TCCGGA	1 cut(s)	510
AciI	CCGC	4 cut(s)	189, 673, 692, 708
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	559
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	1 cut(s)	663
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	3 cut(s)	122, 182, 293
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	601
Aor13HI	TCCGGA	1 cut(s)	510
AoxI	GGCC	2 cut(s)	424, 572
ApeKI	GCWGC	4 cut(s)	324, 641, 704, 724
ApoI	RAATTY	1 cut(s)	293
AspA2I	CCTAGG	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	224, 679
AspS9I	GGNCC	1 cut(s)	598
AsuC2I	CCSGG	3 cut(s)	602, 603, 658
AsuHPI	GGTGA	2 cut(s)	34, 256
AvaI	CYCGRG	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	598
AvrII	CCTAGG	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	426
BbvI	GCAGC	4 cut(s)	336, 628, 716, 736
BccI	CCATC	5 cut(s)	137, 314, 315, 416, 522
BceAI	ACGGC	1 cut(s)	373
BciVI	GTATCC	1 cut(s)	536
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	3 cut(s)	602, 603, 658
BfaI	CTAG	3 cut(s)	476, 609, 627
BfmI	CTRYAG	1 cut(s)	642
BfoI	RGCGCY	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	6 cut(s)	325, 642, 693, 705, 708, 725
BlnI	CCTAGG	1 cut(s)	626
BlsI	GCNGC	6 cut(s)	326, 643, 694, 706, 709, 726
Bme1390I	CCNGG	3 cut(s)	602, 603, 658
Bme18I	GGWCC	1 cut(s)	598
BmeT110I	CYCGRG	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	3 cut(s)	602, 603, 658
BoxI	GACNNNNGTC	1 cut(s)	8
BpuMI	CCSGG	3 cut(s)	602, 603, 658
BsaAI	YACGTR	2 cut(s)	547, 581
BsaBI	GATNNNNATC	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	559
BsaJI	CCNNGG	2 cut(s)	601, 626
BsaWI	WCCGGW	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse8I	GATNNNNATC	1 cut(s)	471
BseAI	TCCGGA	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	601, 626
BseGI	GGATG	4 cut(s)	172, 283, 463, 472
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMII	CTCAG	1 cut(s)	287
BseRI	GAGGAG	2 cut(s)	362, 416
BseXI	GCAGC	4 cut(s)	336, 628, 716, 736
BshFI	GGCC	2 cut(s)	426, 574
BsiHKCI	CYCGRG	1 cut(s)	601
BsiSI	CCGG	3 cut(s)	511, 602, 657
BslI	CCNNNNNNNGG	1 cut(s)	663
BsnI	GGCC	2 cut(s)	426, 574
BsoBI	CYCGRG	1 cut(s)	601
Bsp13I	TCCGGA	1 cut(s)	510
Bsp143I	GATC	5 cut(s)	31, 49, 85, 472, 584
BspACI	CCGC	4 cut(s)	189, 673, 692, 708
BspANI	GGCC	2 cut(s)	426, 574
BspCNI	CTCAG	1 cut(s)	286
BspEI	TCCGGA	1 cut(s)	510
BspHI	TCATGA	2 cut(s)	28, 139
BspLI	GGNNCC	1 cut(s)	600
BspMAI	CTGCAG	1 cut(s)	646
BspMI	ACCTGC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	601, 626
BssMI	GATC	5 cut(s)	31, 49, 85, 472, 584
BssNI	GRCGYC	1 cut(s)	559
BssT1I	CCWWGG	1 cut(s)	626
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	1 cut(s)	559
BstBAI	YACGTR	2 cut(s)	547, 581
BstC8I	GCNNGC	3 cut(s)	209, 213, 675
BstDEI	CTNAG	2 cut(s)	273, 368
BstF5I	GGATG	4 cut(s)	172, 283, 463, 472
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	2 cut(s)	224, 679
BstKTI	GATC	5 cut(s)	34, 52, 88, 475, 587
BstMBI	GATC	5 cut(s)	31, 49, 85, 472, 584
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 674, 701
BstNSI	RCATGY	2 cut(s)	215, 343
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	600, 601, 656
BstSFI	CTRYAG	1 cut(s)	642
BstSNI	TACGTA	1 cut(s)	581
BstV1I	GCAGC	4 cut(s)	336, 628, 716, 736
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	426, 574
BtsCI	GGATG	4 cut(s)	172, 283, 463, 472
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	2 cut(s)	281, 651
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	3 cut(s)	209, 213, 675
CciI	TCATGA	2 cut(s)	28, 139
CfoI	GCGC	2 cut(s)	224, 679
Cfr13I	GGNCC	1 cut(s)	598
Cfr9I	CCCGGG	1 cut(s)	601
CseI	GACGC	2 cut(s)	491, 548
Csp6I	GTAC	1 cut(s)	578
CviAII	CATG	6 cut(s)	19, 29, 140, 212, 340, 428
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	2 cut(s)	273, 368
DpnI	GATC	5 cut(s)	33, 51, 87, 474, 586
DpnII	GATC	5 cut(s)	31, 49, 85, 472, 584
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco105I	TACGTA	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	626
Eco147I	AGGCCT	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	475
Eco88I	CYCGRG	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	626
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	6 cut(s)	22, 32, 143, 215, 343, 431
FatI	CATG	6 cut(s)	18, 28, 139, 211, 339, 427
FauI	CCCGC	1 cut(s)	666
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	6 cut(s)	325, 642, 693, 705, 708, 725
FokI	GGATG	4 cut(s)	179, 270, 470, 479
Fsp4HI	GCNGC	6 cut(s)	325, 642, 693, 705, 708, 725
FspBI	CTAG	3 cut(s)	476, 609, 627
FspI	TGCGCA	1 cut(s)	223
GlaI	GCGC	2 cut(s)	223, 678
GluI	GCNGC	6 cut(s)	325, 642, 693, 705, 708, 725
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	2 cut(s)	426, 574
HapII	CCGG	3 cut(s)	511, 602, 657
HgaI	GACGC	2 cut(s)	491, 548
HhaI	GCGC	2 cut(s)	224, 679
Hin1I	GRCGYC	1 cut(s)	559
Hin1II	CATG	6 cut(s)	22, 32, 143, 215, 343, 431
Hin6I	GCGC	2 cut(s)	222, 677
HinP1I	GCGC	2 cut(s)	222, 677
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	3 cut(s)	511, 602, 657
HphI	GGTGA	2 cut(s)	34, 256
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	2 cut(s)	195, 747
Hpy188III	TCNNGA	8 cut(s)	29, 83, 140, 182, 298, 476, 511, 563
Hpy8I	GTNNAC	1 cut(s)	281
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	1 cut(s)	657
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	3 cut(s)	303, 546, 580
HpyCH4V	TGCA	4 cut(s)	73, 100, 155, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 674, 701
HpyF3I	CTNAG	2 cut(s)	273, 368
HpySE526I	ACGT	3 cut(s)	303, 546, 580
Hsp92I	GRCGYC	1 cut(s)	559
Hsp92II	CATG	6 cut(s)	22, 32, 143, 215, 343, 431
HspAI	GCGC	2 cut(s)	222, 677
Kpn2I	TCCGGA	1 cut(s)	510
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	31, 49, 85, 472, 584
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	4 cut(s)	336, 628, 716, 736
MaeI	CTAG	3 cut(s)	476, 609, 627
MaeII	ACGT	3 cut(s)	303, 546, 580
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	5 cut(s)	33, 51, 87, 474, 586
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	5 cut(s)	31, 49, 85, 472, 584
MboII	GAAGA	5 cut(s)	227, 422, 473, 537, 643
MlsI	TGGCCA	1 cut(s)	426
MluCI	AATT	1 cut(s)	293
MluNI	TGGCCA	1 cut(s)	426
MmeI	TCCRAC	1 cut(s)	725
Mox20I	TGGCCA	1 cut(s)	426
MroI	TCCGGA	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	426
MspI	CCGG	3 cut(s)	511, 602, 657
MspR9I	CCNGG	3 cut(s)	602, 603, 658
MwoI	GCNNNNNNNGC	3 cut(s)	221, 674, 701
NciI	CCSGG	3 cut(s)	602, 603, 658
NdeII	GATC	5 cut(s)	31, 49, 85, 472, 584
NlaIII	CATG	6 cut(s)	22, 32, 143, 215, 343, 431
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	244
NsbI	TGCGCA	1 cut(s)	223
NspI	RCATGY	2 cut(s)	215, 343
PaeI	GCATGC	1 cut(s)	215
PagI	TCATGA	2 cut(s)	28, 139
PaqCI	CACCTGC	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	574
PciI	ACATGT	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	6 cut(s)	326, 643, 694, 706, 709, 726
Ppu21I	YACGTR	2 cut(s)	547, 581
PpuMI	RGGWCCY	1 cut(s)	598
PscI	ACATGT	1 cut(s)	339
PshAI	GACNNNNGTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	598
PspPPI	RGGWCCY	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	646
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	17
SatI	GCNGC	6 cut(s)	325, 642, 693, 705, 708, 725
Sau3AI	GATC	5 cut(s)	31, 49, 85, 472, 584
Sau96I	GGNCC	1 cut(s)	598
ScrFI	CCNGG	3 cut(s)	602, 603, 658
SetI	ASST	8 cut(s)	39, 205, 230, 269, 306, 549, 583, 740
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	1 cut(s)	598
SmaI	CCCGGG	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	17
SnaBI	TACGTA	1 cut(s)	581
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	1 cut(s)	293
SseBI	AGGCCT	1 cut(s)	574
SsiI	CCGC	4 cut(s)	189, 673, 692, 708
SspMI	CTAG	3 cut(s)	476, 609, 627
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	3 cut(s)	600, 601, 656
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	3 cut(s)	306, 549, 583
TaqI	TCGA	2 cut(s)	345, 523
TasI	AATT	1 cut(s)	293
TauI	GCSGC	2 cut(s)	695, 710
TfiI	GAWTC	1 cut(s)	136
TscAI	CASTG	2 cut(s)	281, 651
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	4 cut(s)	324, 641, 704, 724
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	474, 489
TspMI	CCCGGG	1 cut(s)	601
TspRI	CASTG	2 cut(s)	281, 651
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	1 cut(s)	293
XbaI	TCTAGA	1 cut(s)	475
XceI	RCATGY	2 cut(s)	215, 343
XmaI	CCCGGG	1 cut(s)	601
XmaJI	CCTAGG	1 cut(s)	626
XspI	CTAG	3 cut(s)	476, 609, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.