Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007205

Physical Location & Seq

Genomic Coordinates Reverse (-)

53637718 .. 53642422

Gene Structure 4705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG334600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGACTTCAGTCATCAACGTCGACGGCCACGATCACCTACCCTTGGATCTTTGCAATTCATCCACCCATCAACACCAGGGGGGAATGGAAAGCAAAGAAGATAATTGTGAAAAGGGGCGATGTGGGAACCATGGTGGGGTGTGTGCAATATGTTTGGATGAGATTATGCTTCAGGAAACGGCTCTTGTAAAAGGTTGCGAGCATGCCTACTGTGCAACTTGCATTCTTCGTTGGGTGACATACAGCAAATCACCCACCTGCCCTCAGTGTAAACATCCATTCGAGTTCCTGAATGTCCATCGGTCACTTGATGGCAGCATACATGATTTTATGTTCGAGGAGAGTGTGTGTCTACTGCTTAGAGCCACATGGTTTGAGCCTCTAGTTGTGGAGGATCGTGAAGATGTGTATGCATATGATGATTCTGAAGATTATTATCCCTACGAGGATGAAGAGGATGACCTAGATGAAGCTTACTTCAGCAGTTCATCGAGTATCCGTATTGGTAATCGAAGGTGGGGAGATAATGGGTATGTGAGCGCTGGAAGGCAAGAAGCAAGGCCTGTTCACAGATCAAATATCCAGGAAGCTGGTGCTAGTTCTTCTCGTGAACCTAGAAAGAAAGAGGCTTCAATGGATAAAACTGGGAGACGGGCAAAGAGGGCACTTAAGCGAGAAGCGGCGGATAAGGCTGCTGCAGCAAAACATGAGCTGCATTTGGCAAGGTTGGGCCGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

246

Amino Acids

27.79

Weight (kDa)

5.65

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	48 - 91	6.2e-10	Ring finger domain
zf-C3HC4_2	PF13923	48 - 90	4.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	48 - 90	3.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430
fragaria_vesca	FvH4_3g27900 FvH4_3g27900
malus_domestica	MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1
prunus_persica	Prupe.4G267100_v2.0.a1
pyrus_communis	pycom03g12220 pycom12g08720
rosa_chinensis	RchiOBHm_Chr5g0050631
rosa_laevigata	RLG00000034713
rosa_multiflora	Rmu_co7960075.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030170
rosa_rugosa	Rorug05G0262200
rosa_samantha	Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900
rosa_wichuraiana	Rw5G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AccI	GTMKAC	2 cut(s)	21, 352
AciI	CCGC	2 cut(s)	680, 683
AclWI	GGATC	2 cut(s)	54, 402
AcoI	YGGCCR	1 cut(s)	25
AcuI	CTGAAG	3 cut(s)	155, 447, 463
AfeI	AGCGCT	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	43, 136
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	1 cut(s)	633
AjnI	CCWGG	2 cut(s)	75, 582
AluBI	AGCT	3 cut(s)	473, 590, 712
AluI	AGCT	3 cut(s)	473, 590, 712
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	54, 402
Aor51HI	AGCGCT	1 cut(s)	541
AoxI	GGCC	3 cut(s)	25, 560, 730
ApeKI	GCWGC	5 cut(s)	315, 692, 695, 698, 712
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	730
AsuHPI	GGTGA	3 cut(s)	26, 243, 247
BaeGI	GKGCMC	1 cut(s)	667
BauI	CACGAG	1 cut(s)	606
BbvI	GCAGC	5 cut(s)	327, 679, 682, 699, 710
BccI	CCATC	3 cut(s)	75, 305, 306
BceAI	ACGGC	2 cut(s)	40, 195
BciT130I	CCWGG	2 cut(s)	77, 584
BciVI	GTATCC	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	4 cut(s)	383, 464, 597, 615
BfmI	CTRYAG	1 cut(s)	696
BfoI	RGCGCY	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	668
BfuAI	ACCTGC	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	506
BisI	GCNGC	6 cut(s)	316, 681, 693, 696, 699, 713
BlsI	GCNGC	6 cut(s)	317, 682, 694, 697, 700, 714
Bme1390I	CCNGG	2 cut(s)	77, 584
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	77, 584
BmrI	ACTGGG	1 cut(s)	654
BmuI	ACTGGG	1 cut(s)	654
BoxI	GACNNNNGTC	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	42, 76, 130
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 136
Bse1I	ACTGG	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	77, 584
BseDI	CCNNGG	3 cut(s)	42, 76, 130
BseGI	GGATG	5 cut(s)	59, 163, 274, 454, 463
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	2 cut(s)	43, 136
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	5 cut(s)	327, 679, 682, 699, 710
BshFI	GGCC	3 cut(s)	27, 562, 732
BsiSI	CCGG	1 cut(s)	733
BslI	CCNNNNNNNGG	2 cut(s)	43, 136
BsmAI	GTCTC	1 cut(s)	643
BsmBI	CGTCTC	1 cut(s)	643
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	3 cut(s)	27, 562, 732
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	4 cut(s)	31, 46, 394, 572
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	2 cut(s)	680, 683
BspANI	GGCC	3 cut(s)	27, 562, 732
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	128
BspMAI	CTGCAG	1 cut(s)	700
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	54, 402
BspTI	CTTAAG	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	3 cut(s)	42, 76, 130
BssMI	GATC	4 cut(s)	31, 46, 394, 572
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	2 cut(s)	42, 130
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	77, 584
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	447
BstAFI	CTTAAG	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	200, 204
BstDEI	CTNAG	2 cut(s)	264, 359
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	5 cut(s)	59, 163, 274, 454, 463
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	4 cut(s)	34, 49, 397, 575
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	4 cut(s)	31, 46, 394, 572
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 662, 689, 698
BstNI	CCWGG	2 cut(s)	77, 584
BstNSI	RCATGY	1 cut(s)	206
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	75, 582
BstSFI	CTRYAG	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	667
BstV1I	GCAGC	5 cut(s)	327, 679, 682, 699, 710
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	506
BsuRI	GGCC	3 cut(s)	27, 562, 732
BtgI	CCRYGG	1 cut(s)	130
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	5 cut(s)	59, 163, 274, 454, 463
BtsIMutI	CAGTG	1 cut(s)	272
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	200, 204
CfoI	GCGC	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	730
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	5 cut(s)	131, 203, 323, 369, 707
DdeI	CTNAG	2 cut(s)	264, 359
DpnI	GATC	4 cut(s)	33, 48, 396, 574
DpnII	GATC	4 cut(s)	31, 46, 394, 572
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	698
Eco130I	CCWWGG	2 cut(s)	42, 130
Eco147I	AGGCCT	1 cut(s)	562
Eco47III	AGCGCT	1 cut(s)	541
Eco57I	CTGAAG	3 cut(s)	155, 447, 463
EcoRII	CCWGG	2 cut(s)	75, 582
EcoT14I	CCWWGG	2 cut(s)	42, 130
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	2 cut(s)	42, 130
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	5 cut(s)	134, 206, 326, 372, 710
FatI	CATG	5 cut(s)	130, 202, 322, 368, 706
FauNDI	CATATG	1 cut(s)	415
FblI	GTMKAC	2 cut(s)	21, 352
Fnu4HI	GCNGC	6 cut(s)	316, 681, 693, 696, 699, 713
FokI	GGATG	5 cut(s)	46, 170, 261, 461, 470
Fsp4HI	GCNGC	6 cut(s)	316, 681, 693, 696, 699, 713
FspBI	CTAG	4 cut(s)	383, 464, 597, 615
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	6 cut(s)	316, 681, 693, 696, 699, 713
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	27, 562, 732
HapII	CCGG	1 cut(s)	733
HhaI	GCGC	1 cut(s)	542
Hin1II	CATG	5 cut(s)	134, 206, 326, 372, 710
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	1 cut(s)	733
HphI	GGTGA	3 cut(s)	26, 243, 247
Hpy166II	GTNNAC	5 cut(s)	22, 272, 353, 568, 611
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	4 cut(s)	173, 289, 398, 608
Hpy8I	GTNNAC	5 cut(s)	22, 272, 353, 568, 611
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	2 cut(s)	507, 540
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	7 cut(s)	54, 146, 215, 222, 413, 698, 715
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 662, 689, 698
HpyF3I	CTNAG	2 cut(s)	264, 359
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	134, 206, 326, 372, 710
HspAI	GCGC	1 cut(s)	540
Kzo9I	GATC	4 cut(s)	31, 46, 394, 572
Lsp1109I	GCAGC	5 cut(s)	327, 679, 682, 699, 710
MaeI	CTAG	4 cut(s)	383, 464, 597, 615
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	235, 303
MalI	GATC	4 cut(s)	33, 48, 396, 574
MboI	GATC	4 cut(s)	31, 46, 394, 572
MboII	GAAGA	6 cut(s)	110, 218, 413, 440, 464, 594
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	2 cut(s)	55, 103
MnlI	CCTC	8 cut(s)	273, 331, 385, 390, 439, 448, 619, 654
Mph1103I	ATGCAT	1 cut(s)	415
MseI	TTAA	1 cut(s)	669
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	1 cut(s)	733
MspR9I	CCNGG	2 cut(s)	77, 584
Mva1269I	GAATGC	1 cut(s)	222
MvaI	CCWGG	2 cut(s)	77, 584
MwoI	GCNNNNNNNGC	4 cut(s)	212, 662, 689, 698
NcoI	CCATGG	1 cut(s)	130
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	4 cut(s)	31, 46, 394, 572
NlaIII	CATG	5 cut(s)	134, 206, 326, 372, 710
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	2 cut(s)	235, 303
NsiI	ATGCAT	1 cut(s)	415
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PaqCI	CACCTGC	1 cut(s)	266
PceI	AGGCCT	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	6 cut(s)	317, 682, 694, 697, 700, 714
PshAI	GACNNNNGTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	75, 582
PspGI	CCWGG	2 cut(s)	75, 582
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	730
PstI	CTGCAG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	46
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	6 cut(s)	316, 681, 693, 696, 699, 713
Sau3AI	GATC	4 cut(s)	31, 46, 394, 572
Sau96I	GGNCC	1 cut(s)	730
ScrFI	CCNGG	2 cut(s)	77, 584
SduI	GDGCHC	1 cut(s)	667
SfcI	CTRYAG	1 cut(s)	696
SgrDI	CGTCGACG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	55, 103
SseBI	AGGCCT	1 cut(s)	562
SsiI	CCGC	2 cut(s)	680, 683
SspMI	CTAG	4 cut(s)	383, 464, 597, 615
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	2 cut(s)	75, 582
StyI	CCWWGG	2 cut(s)	42, 130
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	21, 282, 336, 491, 511
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	2 cut(s)	55, 103
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	1 cut(s)	272
TseFI	GTSAC	2 cut(s)	235, 303
TseI	GCWGC	5 cut(s)	315, 692, 695, 698, 712
Tsp45I	GTSAC	2 cut(s)	235, 303
TspDTI	ATGAA	4 cut(s)	48, 465, 477, 483
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	668
XceI	RCATGY	1 cut(s)	206
XmiI	GTMKAC	2 cut(s)	21, 352
XspI	CTAG	4 cut(s)	383, 464, 597, 615
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.