Zinc finger, C3HC4 type (RING finger)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G12310 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 AT5G19430 |
| fragaria_vesca | FvH4_3g27900 FvH4_3g27900 |
| malus_domestica | MD03G1166600.v1.1 MD03G1166700.v1.1 MD11G1185700.v1.1 |
| prunus_persica | Prupe.4G267100_v2.0.a1 |
| pyrus_communis | pycom03g12220 pycom12g08720 |
| rosa_chinensis | RchiOBHm_Chr5g0050631 |
| rosa_laevigata | RLG00000034713 |
| rosa_multiflora | Rmu_co7960075.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00030170 |
| rosa_rugosa | Rorug05G0262200 |
| rosa_samantha | Rh5AG334600 Rh5BG343900 Rh5CG371700 Rh5DG356900 |
| rosa_wichuraiana | Rw5G031560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 275 |
| Acc16I | TGCGCA | 1 cut(s) | 223 |
| Acc36I | ACCTGC | 2 cut(s) | 275, 315 |
| AccBSI | CCGCTC | 1 cut(s) | 191 |
| AciI | CCGC | 1 cut(s) | 189 |
| AcsI | RAATTY | 1 cut(s) | 293 |
| AgsI | TTSAA | 3 cut(s) | 122, 182, 293 |
| AluBI | AGCT | 2 cut(s) | 37, 417 |
| AluI | AGCT | 2 cut(s) | 37, 417 |
| ApoI | RAATTY | 1 cut(s) | 293 |
| AspLEI | GCGC | 1 cut(s) | 224 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 256 |
| BccI | CCATC | 3 cut(s) | 137, 314, 315 |
| BclI | TGATCA | 1 cut(s) | 31 |
| BfuAI | ACCTGC | 2 cut(s) | 275, 315 |
| BmrI | ACTGGG | 1 cut(s) | 401 |
| BmuI | ACTGGG | 1 cut(s) | 401 |
| BoxI | GACNNNNGTC | 1 cut(s) | 8 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 387, 419 |
| Bse1I | ACTGG | 1 cut(s) | 407 |
| BseGI | GGATG | 2 cut(s) | 172, 283 |
| BseMII | CTCAG | 1 cut(s) | 287 |
| BseNI | ACTGG | 1 cut(s) | 407 |
| BsgI | GTGCAG | 1 cut(s) | 174 |
| Bsp143I | GATC | 3 cut(s) | 31, 49, 85 |
| BspACI | CCGC | 1 cut(s) | 189 |
| BspCNI | CTCAG | 1 cut(s) | 286 |
| BspHI | TCATGA | 2 cut(s) | 28, 139 |
| BspMI | ACCTGC | 2 cut(s) | 275, 315 |
| BsrBI | CCGCTC | 1 cut(s) | 191 |
| BsrI | ACTGG | 1 cut(s) | 407 |
| BssMI | GATC | 3 cut(s) | 31, 49, 85 |
| Bst4CI | ACNGT | 1 cut(s) | 26 |
| BstC8I | GCNNGC | 2 cut(s) | 209, 213 |
| BstDEI | CTNAG | 1 cut(s) | 273 |
| BstF5I | GGATG | 2 cut(s) | 172, 283 |
| BstHHI | GCGC | 1 cut(s) | 224 |
| BstKTI | GATC | 3 cut(s) | 34, 52, 88 |
| BstMBI | GATC | 3 cut(s) | 31, 49, 85 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 221 |
| BstNSI | RCATGY | 1 cut(s) | 215 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 8 |
| BtsCI | GGATG | 2 cut(s) | 172, 283 |
| BtsIMutI | CAGTG | 1 cut(s) | 281 |
| BveI | ACCTGC | 2 cut(s) | 275, 315 |
| Cac8I | GCNNGC | 2 cut(s) | 209, 213 |
| CciI | TCATGA | 2 cut(s) | 28, 139 |
| CfoI | GCGC | 1 cut(s) | 224 |
| CviAII | CATG | 4 cut(s) | 19, 29, 140, 212 |
| CviJI | RGCY | 3 cut(s) | 37, 255, 417 |
| CviKI_1 | RGCY | 3 cut(s) | 37, 255, 417 |
| DdeI | CTNAG | 1 cut(s) | 273 |
| DpnI | GATC | 3 cut(s) | 33, 51, 87 |
| DpnII | GATC | 3 cut(s) | 31, 49, 85 |
| EcoRI | GAATTC | 1 cut(s) | 293 |
| FaeI | CATG | 4 cut(s) | 22, 32, 143, 215 |
| FaiI | YATR | 9 cut(s) | 20, 30, 141, 160, 213, 250, 355, 361, 387 |
| FatI | CATG | 4 cut(s) | 18, 28, 139, 211 |
| FbaI | TGATCA | 1 cut(s) | 31 |
| FokI | GGATG | 2 cut(s) | 179, 270 |
| FspI | TGCGCA | 1 cut(s) | 223 |
| GlaI | GCGC | 1 cut(s) | 223 |
| HhaI | GCGC | 1 cut(s) | 224 |
| Hin1II | CATG | 4 cut(s) | 22, 32, 143, 215 |
| Hin6I | GCGC | 1 cut(s) | 222 |
| HinP1I | GCGC | 1 cut(s) | 222 |
| HinfI | GANTC | 1 cut(s) | 136 |
| HphI | GGTGA | 2 cut(s) | 34, 256 |
| Hpy166II | GTNNAC | 1 cut(s) | 281 |
| Hpy188III | TCNNGA | 5 cut(s) | 29, 83, 140, 182, 298 |
| Hpy8I | GTNNAC | 1 cut(s) | 281 |
| HpyCH4III | ACNGT | 1 cut(s) | 26 |
| HpyCH4V | TGCA | 4 cut(s) | 73, 100, 155, 359 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 221 |
| HpyF3I | CTNAG | 1 cut(s) | 273 |
| Hsp92II | CATG | 4 cut(s) | 22, 32, 143, 215 |
| HspAI | GCGC | 1 cut(s) | 222 |
| Ksp22I | TGATCA | 1 cut(s) | 31 |
| Kzo9I | GATC | 3 cut(s) | 31, 49, 85 |
| LpnPI | CCDG | 8 cut(s) | 74, 83, 179, 241, 280, 310, 311, 420 |
| MaeIII | GTNAC | 1 cut(s) | 244 |
| MalI | GATC | 3 cut(s) | 33, 51, 87 |
| MbiI | CCGCTC | 1 cut(s) | 191 |
| MboI | GATC | 3 cut(s) | 31, 49, 85 |
| MboII | GAAGA | 1 cut(s) | 227 |
| MluCI | AATT | 1 cut(s) | 293 |
| MnlI | CCTC | 4 cut(s) | 103, 282, 349, 413 |
| MslI | CAYNNNNRTG | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 221 |
| NdeII | GATC | 3 cut(s) | 31, 49, 85 |
| NlaIII | CATG | 4 cut(s) | 22, 32, 143, 215 |
| NmuCI | GTSAC | 1 cut(s) | 244 |
| NsbI | TGCGCA | 1 cut(s) | 223 |
| NspI | RCATGY | 1 cut(s) | 215 |
| PaeI | GCATGC | 1 cut(s) | 215 |
| PagI | TCATGA | 2 cut(s) | 28, 139 |
| PaqCI | CACCTGC | 1 cut(s) | 275 |
| PfeI | GAWTC | 1 cut(s) | 136 |
| PshAI | GACNNNNGTC | 1 cut(s) | 8 |
| RseI | CAYNNNNRTG | 1 cut(s) | 17 |
| Sau3AI | GATC | 3 cut(s) | 31, 49, 85 |
| SetI | ASST | 7 cut(s) | 39, 205, 230, 269, 329, 405, 419 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 17 |
| SphI | GCATGC | 1 cut(s) | 215 |
| Sse9I | AATT | 1 cut(s) | 293 |
| SsiI | CCGC | 1 cut(s) | 189 |
| TaaI | ACNGT | 1 cut(s) | 26 |
| TasI | AATT | 1 cut(s) | 293 |
| TfiI | GAWTC | 1 cut(s) | 136 |
| TscAI | CASTG | 1 cut(s) | 281 |
| TseFI | GTSAC | 1 cut(s) | 244 |
| Tsp45I | GTSAC | 1 cut(s) | 244 |
| TspRI | CASTG | 1 cut(s) | 281 |
| XapI | RAATTY | 1 cut(s) | 293 |
| XceI | RCATGY | 1 cut(s) | 215 |